; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc12g0321821 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0321821
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonuclease H
Genome locationCMiso1.1chr12:8918385..8919308
RNA-Seq ExpressionCmc12g0321821
SyntenyCmc12g0321821
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNY04816.1 gag/pol polyprotein [Trifolium pratense]1.1e-13575.57Show/hide
Query:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF
        M +KI+EEV+KQFD GFLAV+KYP WVANIVP PKK+GKVRMCVDYRDLNRAS KD+FPLPHIDVLVDN A+FS FSFMDGFSGYNQIKMAPED EK TF
Subjt:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF

Query:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV
        IT W TFCYK+MPFGLKNAGATYQRAMVTLFHD++HKEIEVYVDD+IAKS+ EE H+V L+KLFERL+KF+L+ N  KC FG  SGKLLGF+VS+ GI+V
Subjt:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV

Query:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV
        DPDK++AI  +  P+T++EVR FLGRLNYIA+FI HLT TCEPI KLL K++   WNEDCQKAF+KIK+YLQ P ILV P P RPLI+YL V +GSMGCV
Subjt:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV

Query:  LGKHDST
        LG+HD T
Subjt:  LGKHDST

TYK00092.1 protein NYNRIN-like [Cucumis melo var. makuwa]1.3e-15488.93Show/hide
Query:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF
        MLIKIKEEV+KQFD GFLAV+KYPIWVANIVP PKK+GKVRMCVDYRDLNRAS KDNFPLPHIDVLVDN A FSTFSFMDGFSGYNQIKMAPEDQEK TF
Subjt:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF

Query:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV
        ITLW TFCYK+MPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDD+IAKSRLEEKH+VTL KLFERL+KFQLK N AKCIFGVSSGKLLGFIVS EGIKV
Subjt:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV

Query:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV
        D DKIKAIV LRPPKT++EVR+FLGRLNYIA+FI HLTQTCEPILKLL KNE  HWNEDCQKAFDKIKDYLQSP ILV PTP RPLILYL V EGSMGCV
Subjt:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV

Query:  LGKHDST
        LG+HDST
Subjt:  LGKHDST

XP_017609132.1 PREDICTED: uncharacterized protein LOC108455018 [Gossypium arboreum]1.8e-13576.87Show/hide
Query:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF
        ML+KIKEEV+KQFD G+L  SKYP WVANIVP PKK+GKVRMCVDYRDLNRAS KDNFPLPHID LVDN A+ S FSFMDGFSGYNQIKMAPED EK TF
Subjt:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF

Query:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV
        IT+W TFCYK+MPFGLKNAGATYQRAMVTLFHD+MHKEIEVYVDD+IAKSR EE+H+V L+KLFERL+KFQLK N AKC FG +SGKLLGFIVS+ GI+V
Subjt:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV

Query:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV
        DPDKIKAI  L PP+TQ+EVR FLGRLNYIA+FI  LT  C+PI +LL K+    WNE+CQ AFDKIK YL SP +LV PTP RPLILYL V E SMGC+
Subjt:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV

Query:  LGKHDST
        LG+HD +
Subjt:  LGKHDST

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.8e-13678.18Show/hide
Query:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF
        MLIK+K+EV KQ D GFL VS YP WVANIVP PKKNG+VRMCVDYRDLNRAS KDNFPLPHIDVLVDN A FSTFSFMDGFSGYN+IKMAPED+EK TF
Subjt:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF

Query:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV
        ITLW TFCYK+M FGLKNAGATYQRAMVTLFHDLMHKEIEVYVDD+IAKSR  E+H + LRKLFERL+KFQLK N  KC FGV+SGKLLGF+V +EGIKV
Subjt:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV

Query:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV
        DPDK+KAI+ + PPKT +EVR FLGRLNYIA+FI HLT TCEPI KLL KN    W EDCQ AFDKIK Y QSP ILV PT  RPLILYL + E SMGCV
Subjt:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV

Query:  LGKHDST
        LG+HD +
Subjt:  LGKHDST

XP_038685727.1 uncharacterized protein LOC119985509 [Tripterygium wilfordii]6.9e-13575.24Show/hide
Query:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF
        ML+KI++EV+KQFD GFLAV++YP WVANIVP PKK+GKVRMCVDYRDLNRAS KDNFPLPHIDVLVDN A  STFSFMDGFSGYNQIKMAPED+EK TF
Subjt:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF

Query:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV
        ITLW TFCYK+MPFGLKNAGATYQRAMVTLFHD+MH+E+EVYVDD+IAKS+ +E H+V L+KLF+RL+K QLK N AKC FG +SGKLLGFIVSR+GI+V
Subjt:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV

Query:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV
        DPDK+KAI+ + PP+T++EVR FLGRLNYIA+FI  LT TCEPI KLL K+ +  WNEDCQ AF+KIK YL+SP +L+ P   RPLILYL V + SMGCV
Subjt:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV

Query:  LGKHDST
        LG+HDS+
Subjt:  LGKHDST

TrEMBL top hitse value%identityAlignment
A0A1U8KJX4 Ribonuclease H2.0e-13576.87Show/hide
Query:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF
        ML+KIKEEV+KQFD GFL  SKYP WVANIVP PKK+GKVRMCVDYRDLNRAS KDNFPLPHID LVDN A+ S FSFMDGFSGYNQIKMAPED EK TF
Subjt:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF

Query:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV
        IT+W TFCYK+MPFGLKNAGATYQRAMVTLFHD+MHKEIEVYVDD+IAKSR EE+H++ L+KLFERL+KFQLK N AKC FG +SGKLLGFIVS  GI+V
Subjt:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV

Query:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV
        DPDKIKAI  L PP+TQ+EVR FLGRLNYIA+FI  LT  C+PI +LL K+    WNE+CQ  FDKIK YL SP +LV PTP RPLILYL V E SMGCV
Subjt:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV

Query:  LGKHDST
        LG+HD +
Subjt:  LGKHDST

A0A2K3NP54 Ribonuclease H5.1e-13675.57Show/hide
Query:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF
        M +KI+EEV+KQFD GFLAV+KYP WVANIVP PKK+GKVRMCVDYRDLNRAS KD+FPLPHIDVLVDN A+FS FSFMDGFSGYNQIKMAPED EK TF
Subjt:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF

Query:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV
        IT W TFCYK+MPFGLKNAGATYQRAMVTLFHD++HKEIEVYVDD+IAKS+ EE H+V L+KLFERL+KF+L+ N  KC FG  SGKLLGF+VS+ GI+V
Subjt:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV

Query:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV
        DPDK++AI  +  P+T++EVR FLGRLNYIA+FI HLT TCEPI KLL K++   WNEDCQKAF+KIK+YLQ P ILV P P RPLI+YL V +GSMGCV
Subjt:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV

Query:  LGKHDST
        LG+HD T
Subjt:  LGKHDST

A0A5D3BMZ2 Protein NYNRIN-like6.5e-15588.93Show/hide
Query:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF
        MLIKIKEEV+KQFD GFLAV+KYPIWVANIVP PKK+GKVRMCVDYRDLNRAS KDNFPLPHIDVLVDN A FSTFSFMDGFSGYNQIKMAPEDQEK TF
Subjt:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF

Query:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV
        ITLW TFCYK+MPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDD+IAKSRLEEKH+VTL KLFERL+KFQLK N AKCIFGVSSGKLLGFIVS EGIKV
Subjt:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV

Query:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV
        D DKIKAIV LRPPKT++EVR+FLGRLNYIA+FI HLTQTCEPILKLL KNE  HWNEDCQKAFDKIKDYLQSP ILV PTP RPLILYL V EGSMGCV
Subjt:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV

Query:  LGKHDST
        LG+HDST
Subjt:  LGKHDST

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.4e-13678.18Show/hide
Query:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF
        MLIK+K+EV KQ D GFL VS YP WVANIVP PKKNG+VRMCVDYRDLNRAS KDNFPLPHIDVLVDN A FSTFSFMDGFSGYN+IKMAPED+EK TF
Subjt:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF

Query:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV
        ITLW TFCYK+M FGLKNAGATYQRAMVTLFHDLMHKEIEVYVDD+IAKSR  E+H + LRKLFERL+KFQLK N  KC FGV+SGKLLGF+V +EGIKV
Subjt:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV

Query:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV
        DPDK+KAI+ + PPKT +EVR FLGRLNYIA+FI HLT TCEPI KLL KN    W EDCQ AFDKIK Y QSP ILV PT  RPLILYL + E SMGCV
Subjt:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV

Query:  LGKHDST
        LG+HD +
Subjt:  LGKHDST

A0A6P4MGK6 Ribonuclease H8.8e-13676.87Show/hide
Query:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF
        ML+KIKEEV+KQFD G+L  SKYP WVANIVP PKK+GKVRMCVDYRDLNRAS KDNFPLPHID LVDN A+ S FSFMDGFSGYNQIKMAPED EK TF
Subjt:  MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTF

Query:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV
        IT+W TFCYK+MPFGLKNAGATYQRAMVTLFHD+MHKEIEVYVDD+IAKSR EE+H+V L+KLFERL+KFQLK N AKC FG +SGKLLGFIVS+ GI+V
Subjt:  ITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKV

Query:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV
        DPDKIKAI  L PP+TQ+EVR FLGRLNYIA+FI  LT  C+PI +LL K+    WNE+CQ AFDKIK YL SP +LV PTP RPLILYL V E SMGC+
Subjt:  DPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCV

Query:  LGKHDST
        LG+HD +
Subjt:  LGKHDST

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.5e-3932.13Show/hide
Query:  KIKEEVEKQFDVGFLAVS----KYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMT
        +++ +++   + G +  S      PIWV           K R+ +DYR LN  +  D  P+P++D ++  +   + F+ +D   G++QI+M PE   K  
Subjt:  KIKEEVEKQFDVGFLAVS----KYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMT

Query:  FITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIK
        F T    + Y  MPFGLKNA AT+QR M  +   L++K   VY+DDII  S   ++H+ +L  +FE+L K  LK  L KC F       LG +++ +GIK
Subjt:  FITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIK

Query:  VDPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKN-ETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMG
         +P+KI+AI     P   +E++ FLG   Y  +FI +     +P+ K L KN +    N +   AF K+K  +    IL  P   +   L     + ++G
Subjt:  VDPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKN-ETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMG

Query:  CVLGK
         VL +
Subjt:  CVLGK

P0CT41 Transposon Tf2-12 polyprotein6.9e-3729.8Show/hide
Query:  IKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTFITLW
        + +E+ +    G +  SK  I    ++  PKK G +RM VDY+ LN+    + +PLP I+ L+  I   + F+ +D  S Y+ I++   D+ K+ F    
Subjt:  IKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTFITLW

Query:  ETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKVDPDK
          F Y +MP+G+  A A +Q  + T+  +     +  Y+DDI+  S+ E +H+  ++ + ++L+   L  N AKC F  S  K +G+ +S +G     + 
Subjt:  ETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKVDPDK

Query:  IKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCVLG-K
        I  ++  + PK ++E+R FLG +NY+ +FI   +Q   P+  LL K+  + W     +A + IK  L SP +L      + ++L     + ++G VL  K
Subjt:  IKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCVLG-K

Query:  HD
        HD
Subjt:  HD

P20825 Retrovirus-related Pol polyprotein from transposon 2976.2e-3831.27Show/hide
Query:  IKIKEEVEKQFDVGFLAVS----KYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKM
        I+++ +V++  + G +  S      P WV    P      K R+ +DYR LN  +  D +P+P++D ++  + +   F+ +D   G++QI+M  E   K 
Subjt:  IKIKEEVEKQFDVGFLAVS----KYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKM

Query:  TFITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGI
         F T    + Y  MPFGL+NA AT+QR M  +   L++K   VY+DDII  S    +H+ +++ +F +L    LK  L KC F       LG IV+ +GI
Subjt:  TFITLWETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGI

Query:  KVDPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNE-DCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSM
        K +P K+KAIV    P   +E+R FLG   Y  +FI +     +P+   L K       + +  +AF+K+K  +    IL  P   +  +L       ++
Subjt:  KVDPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNE-DCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSM

Query:  GCVLGKH
        G VL ++
Subjt:  GCVLGKH

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.8e-4335.31Show/hide
Query:  KIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTFITL
        +I + V+K  D  F+  SK P   + +V  PKK+G  R+CVDYR LN+A+  D FPLP ID L+  I     F+ +D  SGY+QI M P+D+ K  F+T 
Subjt:  KIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTFITL

Query:  WETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKVDPD
           + Y +MPFGL NA +T+ R M   F DL  + + VY+DDI+  S   E+H   L  + ERL+   L     KC F     + LG+ +  + I     
Subjt:  WETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKVDPD

Query:  KIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCVLGK
        K  AI     PKT ++ + FLG +NY  +FI + ++  +PI   +C  +   W E   KA +K+K  L +  +LV    +    L     +  +G VL +
Subjt:  KIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCVLGK

Query:  HDS
         D+
Subjt:  HDS

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.5e-4435.97Show/hide
Query:  KIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTFITL
        +I + V+K  D  F+  SK P   + +V  PKK+G  R+CVDYR LN+A+  D FPLP ID L+  I     F+ +D  SGY+QI M P+D+ K  F+T 
Subjt:  KIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTFITL

Query:  WETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKVDPD
           + Y +MPFGL NA +T+ R M   F DL  + + VY+DDI+  S   E+H   L  + ERL+   L     KC F     + LG+ +  + I     
Subjt:  WETFCYKIMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKVDPD

Query:  KIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCVLGK
        K  AI     PKT ++ + FLG +NY  +FI + ++  +PI   +C  +   W E   KA DK+KD L +  +LV    +    L     +  +G VL +
Subjt:  KIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCVLGK

Query:  HDS
         D+
Subjt:  HDS

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.8e-1132.79Show/hide
Query:  QKFQLKFNLAKCIFGVSSGKLLG--FIVSREGIKVDPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFD
        ++ Q   N  KC FG      LG   I+S EG+  DP K++A+VG   PK   E+R FLG   Y  +F+ +  +   P+ +LL KN +  W E    AF 
Subjt:  QKFQLKFNLAKCIFGVSSGKLLG--FIVSREGIKVDPDKIKAIVGLRPPKTQREVRNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFD

Query:  KIKDYLQSPLILVQPTPRRPLI
         +K  + +  +L  P  + P +
Subjt:  KIKDYLQSPLILVQPTPRRPLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATCAAGATCAAGGAGGAGGTTGAAAAGCAGTTTGATGTTGGATTCTTAGCAGTATCAAAATACCCAATTTGGGTGGCAAACATTGTCCCATTTCCAAAGAAGAA
CGGAAAGGTTAGAATGTGCGTAGACTATAGAGATCTTAATCGGGCCAGTTCTAAAGATAACTTTCCTCTTCCTCACATCGACGTGTTGGTAGATAATATTGCTGAGTTTT
CCACCTTCTCATTTATGGATGGATTTTCAGGATACAACCAGATCAAAATGGCTCCAGAAGATCAAGAAAAAATGACATTCATCACCTTGTGGGAAACGTTTTGTTATAAA
ATAATGCCTTTTGGGTTAAAAAATGCAGGAGCAACTTATCAGAGAGCGATGGTTACATTATTCCATGACCTGATGCATAAAGAAATTGAAGTTTATGTTGATGATATAAT
CGCCAAATCTAGACTCGAAGAAAAGCACATGGTTACCCTTCGTAAGCTTTTTGAGCGATTGCAAAAATTCCAATTAAAGTTTAATCTAGCAAAATGCATATTTGGAGTTT
CTTCTGGGAAGTTATTGGGTTTCATTGTTAGTCGTGAAGGCATCAAGGTGGACCCAGACAAAATCAAGGCGATAGTGGGCTTAAGGCCACCAAAAACACAAAGGGAGGTT
AGAAATTTTCTAGGAAGGTTGAATTACATCGCACAATTTATTTTACACCTCACTCAAACTTGTGAGCCAATTTTAAAATTGCTTTGCAAAAATGAGACTTATCATTGGAA
TGAAGATTGCCAAAAAGCTTTTGACAAAATCAAAGATTACTTGCAAAGCCCTCTTATCCTCGTCCAGCCAACTCCAAGACGACCTTTGATCTTATACTTGATAGTGAAGG
AGGGGTCAATGGGATGTGTGCTAGGAAAACATGACTCTACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGATCAAGATCAAGGAGGAGGTTGAAAAGCAGTTTGATGTTGGATTCTTAGCAGTATCAAAATACCCAATTTGGGTGGCAAACATTGTCCCATTTCCAAAGAAGAA
CGGAAAGGTTAGAATGTGCGTAGACTATAGAGATCTTAATCGGGCCAGTTCTAAAGATAACTTTCCTCTTCCTCACATCGACGTGTTGGTAGATAATATTGCTGAGTTTT
CCACCTTCTCATTTATGGATGGATTTTCAGGATACAACCAGATCAAAATGGCTCCAGAAGATCAAGAAAAAATGACATTCATCACCTTGTGGGAAACGTTTTGTTATAAA
ATAATGCCTTTTGGGTTAAAAAATGCAGGAGCAACTTATCAGAGAGCGATGGTTACATTATTCCATGACCTGATGCATAAAGAAATTGAAGTTTATGTTGATGATATAAT
CGCCAAATCTAGACTCGAAGAAAAGCACATGGTTACCCTTCGTAAGCTTTTTGAGCGATTGCAAAAATTCCAATTAAAGTTTAATCTAGCAAAATGCATATTTGGAGTTT
CTTCTGGGAAGTTATTGGGTTTCATTGTTAGTCGTGAAGGCATCAAGGTGGACCCAGACAAAATCAAGGCGATAGTGGGCTTAAGGCCACCAAAAACACAAAGGGAGGTT
AGAAATTTTCTAGGAAGGTTGAATTACATCGCACAATTTATTTTACACCTCACTCAAACTTGTGAGCCAATTTTAAAATTGCTTTGCAAAAATGAGACTTATCATTGGAA
TGAAGATTGCCAAAAAGCTTTTGACAAAATCAAAGATTACTTGCAAAGCCCTCTTATCCTCGTCCAGCCAACTCCAAGACGACCTTTGATCTTATACTTGATAGTGAAGG
AGGGGTCAATGGGATGTGTGCTAGGAAAACATGACTCTACTTGA
Protein sequenceShow/hide protein sequence
MLIKIKEEVEKQFDVGFLAVSKYPIWVANIVPFPKKNGKVRMCVDYRDLNRASSKDNFPLPHIDVLVDNIAEFSTFSFMDGFSGYNQIKMAPEDQEKMTFITLWETFCYK
IMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDIIAKSRLEEKHMVTLRKLFERLQKFQLKFNLAKCIFGVSSGKLLGFIVSREGIKVDPDKIKAIVGLRPPKTQREV
RNFLGRLNYIAQFILHLTQTCEPILKLLCKNETYHWNEDCQKAFDKIKDYLQSPLILVQPTPRRPLILYLIVKEGSMGCVLGKHDST