; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc12g0322031 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0322031
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr12:9412851..9413705
RNA-Seq ExpressionCmc12g0322031
SyntenyCmc12g0322031
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025917.1 pol protein [Cucumis melo var. makuwa]2.6e-12784.64Show/hide
Query:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS
        A Y+MA AELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS YHQLRIRD 
Subjt:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS

Query:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV
        DI KT FRSRYGHYEFIVMSFGLTNA  VFMDLMNR                        AEHEEHLHQVLETLRA+KLYAKFSKCEFWLKKVTFL HVV
Subjt:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV

Query:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT
        SSEG SVDPAK+EAVTNWPRPST SE RSFLGLA YYRRFVEDF RIASPLTQLTRK TPFVWSPACESSFQELKQKLVT
Subjt:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT

KAA0040409.1 pol protein [Cucumis melo var. makuwa]7.4e-13091.8Show/hide
Query:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS
        A Y+MA AELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRD 
Subjt:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS

Query:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNRAEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVVSSEGFSVDPAKIEAVTNWPRPSTA
        DI KT FRSRYGHYEF+VMSFGLTNA  VFMDLMNRAEHEEHLHQVLETLRANKLYAKFSKCEFWL+KVTFL HVVSSEG SVDPAKIEAVTNWPRPST 
Subjt:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNRAEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVVSSEGFSVDPAKIEAVTNWPRPSTA

Query:  SETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT
        SE RSFLGLA YYR FVEDF RIASPLTQLTRK TPFVWS ACE SFQELKQKLVT
Subjt:  SETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT

KAA0040542.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.5e-12784.64Show/hide
Query:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS
        A Y+MA AELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRD 
Subjt:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS

Query:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV
        DI KT FRSRYGHYEF+VMSFGLTN   VFMDLMNR                        AEHEEHLHQVLETLRANKLYAKFSKCEFWL+KVTFL HVV
Subjt:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV

Query:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT
        SSEG SVDPAKIEAVTNWPRPST SE RSFLGLA YYRRFVEDF RIASPLTQLTRK TPFVWSPACESSFQELKQKLVT
Subjt:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT

KAA0051386.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.2e-12785.36Show/hide
Query:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS
        A Y+MA AELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRDS
Subjt:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS

Query:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV
        DI KT FRSRYGHYEFIVMSFGLTNA  VFMDLMNR                        AEHEEHLHQVLETLRANKLYAKFSKCEFWL+KVTFL  VV
Subjt:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV

Query:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT
        SSEG SVDPAKIEAVTNWPRPST SE RSFLGLA YYRRFVEDF RIASPLTQLTRK TPFVWSPACESSFQELKQKLVT
Subjt:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT

KAA0063793.1 pol protein [Cucumis melo var. makuwa]2.0e-12784.64Show/hide
Query:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS
        A Y+MA AELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRD 
Subjt:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS

Query:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV
        DI KT FRSRYGHYEF+VMSFGLTNA  VFMDLMNR                        AEHEEHLHQVLETLRANKLYAKFSKCEFWL+KVTFL HVV
Subjt:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV

Query:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT
        SSEG SVDPAKIEAVTNWPRPST SE RSFLGLA YYRRFVEDF RIASPLTQLTRK TPFVWSPACE SFQELKQKLVT
Subjt:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT

TrEMBL top hitse value%identityAlignment
A0A5A7TAT0 DNA/RNA polymerases superfamily protein7.5e-12884.64Show/hide
Query:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS
        A Y+MA AELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRD 
Subjt:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS

Query:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV
        DI KT FRSRYGHYEF+VMSFGLTN   VFMDLMNR                        AEHEEHLHQVLETLRANKLYAKFSKCEFWL+KVTFL HVV
Subjt:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV

Query:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT
        SSEG SVDPAKIEAVTNWPRPST SE RSFLGLA YYRRFVEDF RIASPLTQLTRK TPFVWSPACESSFQELKQKLVT
Subjt:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT

A0A5A7TGL7 Pol protein3.6e-13091.8Show/hide
Query:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS
        A Y+MA AELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRD 
Subjt:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS

Query:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNRAEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVVSSEGFSVDPAKIEAVTNWPRPSTA
        DI KT FRSRYGHYEF+VMSFGLTNA  VFMDLMNRAEHEEHLHQVLETLRANKLYAKFSKCEFWL+KVTFL HVVSSEG SVDPAKIEAVTNWPRPST 
Subjt:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNRAEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVVSSEGFSVDPAKIEAVTNWPRPSTA

Query:  SETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT
        SE RSFLGLA YYR FVEDF RIASPLTQLTRK TPFVWS ACE SFQELKQKLVT
Subjt:  SETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT

A0A5A7TP01 Reverse transcriptase1.3e-12784.64Show/hide
Query:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS
        A Y+MA AELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS YHQLRIRD 
Subjt:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS

Query:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV
        DI KT FRSRYGHYEFIVMSFGLTNA  VFMDLMNR                        AEHEEHLHQVLETLRA+KLYAKFSKCEFWLKKVTFL HVV
Subjt:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV

Query:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT
        SSEG SVDPAK+EAVTNWPRPST SE RSFLGLA YYRRFVEDF RIASPLTQLTRK TPFVWSPACESSFQELKQKLVT
Subjt:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT

A0A5A7UB12 Reverse transcriptase5.7e-12885.36Show/hide
Query:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS
        A Y+MA AELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRDS
Subjt:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS

Query:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV
        DI KT FRSRYGHYEFIVMSFGLTNA  VFMDLMNR                        AEHEEHLHQVLETLRANKLYAKFSKCEFWL+KVTFL  VV
Subjt:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV

Query:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT
        SSEG SVDPAKIEAVTNWPRPST SE RSFLGLA YYRRFVEDF RIASPLTQLTRK TPFVWSPACESSFQELKQKLVT
Subjt:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT

A0A5A7V6R2 Reverse transcriptase9.7e-12884.64Show/hide
Query:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS
        A Y+MA AELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRD 
Subjt:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDS

Query:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV
        DI KT FRSRYGHYEF+VMSFGLTNA  VFMDLMNR                        AEHEEHLHQVLETLRANKLYAKFSKCEFWL+KVTFL HVV
Subjt:  DILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVV

Query:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT
        SSEG SVDPAKIEAVTNWPRPST SE RSFLGLA YYRRFVEDF RIASPLTQLTRK TPFVWSPACE SFQELKQKLVT
Subjt:  SSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.64.5e-4535.23Show/hide
Query:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQL
        + Y   QA  +E++ Q+Q++L++G IR S SP+ +P+  V KK+D S     R+ IDYR+LN++TV +R+P+P +D++  +L     F+ IDL   +HQ+
Subjt:  ASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQL

Query:  RIRDSDILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNRA------------------------EHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTF
         +    + KT F +++GHYE++ M FGL NA   F   MN                          EH + L  V E L    L  +  KCEF  ++ TF
Subjt:  RIRDSDILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNRA------------------------EHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTF

Query:  LDHVVSSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPF-VWSPACESSFQELK
        L HV++ +G   +P KIEA+  +P P+   E ++FLGL  YYR+F+ +F  IA P+T+  +K       +P  +S+F++LK
Subjt:  LDHVVSSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPF-VWSPACESSFQELK

P0CT34 Transposon Tf2-1 polyprotein3.5e-4231.54Show/hide
Query:  SYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDSD
        +Y +   +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R+R  D
Subjt:  SYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDSD

Query:  ILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMN------------------------RAEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVVS
          K  FR   G +E++VM +G++ A   F   +N                         +EH +H+  VL+ L+   L    +KCEF   +V F+ + +S
Subjt:  ILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMN------------------------RAEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVVS

Query:  SEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT
         +GF+     I+ V  W +P    E R FLG  +Y R+F+    ++  PL  L +K+  + W+P    + + +KQ LV+
Subjt:  SEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT

P0CT41 Transposon Tf2-12 polyprotein3.5e-4231.54Show/hide
Query:  SYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDSD
        +Y +   +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R+R  D
Subjt:  SYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDSD

Query:  ILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMN------------------------RAEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVVS
          K  FR   G +E++VM +G++ A   F   +N                         +EH +H+  VL+ L+   L    +KCEF   +V F+ + +S
Subjt:  ILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMN------------------------RAEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVVS

Query:  SEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT
         +GF+     I+ V  W +P    E R FLG  +Y R+F+    ++  PL  L +K+  + W+P    + + +KQ LV+
Subjt:  SEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVT

P20825 Retrovirus-related Pol polyprotein from transposon 2977.1e-4334.73Show/hide
Query:  YKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRI
        Y +AQ    E++ Q+QE+L++G IR S SP+ +P   V KK         R+ IDYR+LN++T+ +RYP+P +D++  +L     F+ IDL   +HQ+ +
Subjt:  YKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRI

Query:  RDSDILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLD
         +  I KT F ++ GHYE++ M FGL NA   F   MN                          EH   +  V   L    L  +  KCEF  K+  FL 
Subjt:  RDSDILKTTFRSRYGHYEFIVMSFGLTNASVVFMDLMNR------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLD

Query:  HVVSSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKET
        H+V+ +G   +P K++A+ ++P P+   E R+FLGL  YYR+F+ ++  IA P+T   +K T
Subjt:  HVVSSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKET

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.7e-4234.67Show/hide
Query:  YKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDSDI
        Y + +   +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL S YHQ+ +   D 
Subjt:  YKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDSDI

Query:  LKTTFRSRYGHYEFIVMSFGLTNASVVFMDLM----------------------NRAEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVVSSEG
         KT F +  G YE+ VM FGL NA   F   M                      +  EH +HL  VLE L+   L  K  KC+F  ++  FL + +  + 
Subjt:  LKTTFRSRYGHYEFIVMSFGLTNASVVFMDLM----------------------NRAEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVVSSEG

Query:  FSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKL
         +    K  A+ ++P P T  + + FLG+ +YYRRF+ +  +IA P+      ++   W+   + + ++LK  L
Subjt:  FSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVWSPACESSFQELKQKL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein3.0e-2040.17Show/hide
Query:  HLHQVLETLRANKLYAKFSKCEFWLKKVTFLD--HVVSSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVW
        HL  VL+    ++ YA   KC F   ++ +L   H++S EG S DPAK+EA+  WP P   +E R FLGL  YYRRFV+++ +I  PLT+L +K +   W
Subjt:  HLHQVLETLRANKLYAKFSKCEFWLKKVTFLD--HVVSSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVEDFLRIASPLTQLTRKETPFVW

Query:  SPACESSFQELKQKLVT
        +     +F+ LK  + T
Subjt:  SPACESSFQELKQKLVT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCTTACAAAATGGCTCAAGCCGAGCTGAAGGAGCTGAAGGTACAGCTGCAAGAGTTGCTGGACAAGGGTTTCATCCGACCCAGTGTGTCACCTTGGGGAGCACC
AGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACAGTTAAGAACCGCTACCCCTTACCCAGGATTGATGACT
TGTTCGATCAGTTGCAGGGAGCCACTGTCTTTTCTAAGATTGACCTGCGATCAGACTATCACCAGTTGAGGATCAGGGACAGTGATATTCTTAAGACGACCTTCCGTTCA
AGATATGGACATTACGAGTTCATTGTGATGTCTTTTGGTTTGACTAATGCTTCTGTGGTATTCATGGACTTGATGAACAGGGCTGAGCATGAGGAGCACTTGCACCAAGT
TTTGGAGACTCTTCGAGCCAATAAGCTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTTAAGAAGGTGACTTTCCTCGACCACGTGGTTTCCAGTGAGGGATTTTCTG
TAGACCCAGCAAAGATCGAAGCGGTTACCAATTGGCCTCGACCGTCTACGGCTAGCGAGACTCGTAGTTTCCTGGGTTTGGCAAGTTACTACAGGAGGTTCGTGGAAGAC
TTCTTACGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAAGAGACTCCTTTTGTTTGGAGCCCAGCTTGCGAGAGTAGCTTCCAGGAGCTTAAACAGAAGCTTGTGAC
TCACCAGTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCTTACAAAATGGCTCAAGCCGAGCTGAAGGAGCTGAAGGTACAGCTGCAAGAGTTGCTGGACAAGGGTTTCATCCGACCCAGTGTGTCACCTTGGGGAGCACC
AGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACAGTTAAGAACCGCTACCCCTTACCCAGGATTGATGACT
TGTTCGATCAGTTGCAGGGAGCCACTGTCTTTTCTAAGATTGACCTGCGATCAGACTATCACCAGTTGAGGATCAGGGACAGTGATATTCTTAAGACGACCTTCCGTTCA
AGATATGGACATTACGAGTTCATTGTGATGTCTTTTGGTTTGACTAATGCTTCTGTGGTATTCATGGACTTGATGAACAGGGCTGAGCATGAGGAGCACTTGCACCAAGT
TTTGGAGACTCTTCGAGCCAATAAGCTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTTAAGAAGGTGACTTTCCTCGACCACGTGGTTTCCAGTGAGGGATTTTCTG
TAGACCCAGCAAAGATCGAAGCGGTTACCAATTGGCCTCGACCGTCTACGGCTAGCGAGACTCGTAGTTTCCTGGGTTTGGCAAGTTACTACAGGAGGTTCGTGGAAGAC
TTCTTACGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAAGAGACTCCTTTTGTTTGGAGCCCAGCTTGCGAGAGTAGCTTCCAGGAGCTTAAACAGAAGCTTGTGAC
TCACCAGTCCTGA
Protein sequenceShow/hide protein sequence
MASYKMAQAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSDYHQLRIRDSDILKTTFRS
RYGHYEFIVMSFGLTNASVVFMDLMNRAEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLDHVVSSEGFSVDPAKIEAVTNWPRPSTASETRSFLGLASYYRRFVED
FLRIASPLTQLTRKETPFVWSPACESSFQELKQKLVTHQS