; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc12g0322041 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0322041
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr12:9433811..9434617
RNA-Seq ExpressionCmc12g0322041
SyntenyCmc12g0322041
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039594.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-13692.51Show/hide
Query:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW
        MSFGLTNAPTVFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+LYAKFSKCEFWLKKV+FLGHVVSSEGVS++PAKIE VTNW
Subjt:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW

Query:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTV EIRSFL LAGYYRRFVEDFSRIAS LTQLT KGTPFVWSP CESSFQELKQKLVTAPVLTVPDGS SFVIY+DASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI+TDHKSLKYFFTQ ELNMRQRRWLELVK
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK

KAA0051719.1 pol protein [Cucumis melo var. makuwa]4.9e-13792.51Show/hide
Query:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW
        MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNW
Subjt:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW

Query:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTV EIRSFL LAGYYRRFVEDFSRIASPLTQLT +GTPFVWSPTCESSFQ+LKQKLVTAPVLTVPDGS SFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLY EKIQIFTDHKSLKYFFTQ ELNMRQRRWLELVK
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK

KAA0054634.1 pol protein [Cucumis melo var. makuwa]8.4e-13792.13Show/hide
Query:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW
        MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNW
Subjt:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW

Query:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTV EIRSFL LAGYYRRFVEDFSRIASPLTQLT KGTPFVWSP CESSFQELKQKLVTAPVLTVPDGS +FVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK
        SRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI+TDHKSLKYFFTQ ELNMRQRRWLELVK
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK

KAA0066951.1 pol protein [Cucumis melo var. makuwa]8.4e-13792.13Show/hide
Query:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW
        MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNW
Subjt:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW

Query:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTV EIRSFL LAGYYRRFVEDFSRIASPLTQLT KGTPFVWSP CESSFQELKQKLVTAPVLTVPDGS +FVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK
        SRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI+TDHKSLKYFFTQ ELNMRQRRWLELVK
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK

TYK01306.1 pol protein [Cucumis melo var. makuwa]4.9e-13792.51Show/hide
Query:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW
        MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNW
Subjt:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW

Query:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTV EIRSFL LAGYYRRFVEDFSRIASPLTQLT +GTPFVWSPTCESSFQ+LKQKLVTAPVLTVPDGS SFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLY EKIQIFTDHKSLKYFFTQ ELNMRQRRWLELVK
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK

TrEMBL top hitse value%identityAlignment
A0A5A7T804 Reverse transcriptase5.3e-13792.51Show/hide
Query:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW
        MSFGLTNAPTVFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+LYAKFSKCEFWLKKV+FLGHVVSSEGVS++PAKIE VTNW
Subjt:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW

Query:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTV EIRSFL LAGYYRRFVEDFSRIAS LTQLT KGTPFVWSP CESSFQELKQKLVTAPVLTVPDGS SFVIY+DASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI+TDHKSLKYFFTQ ELNMRQRRWLELVK
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK

A0A5A7UE01 Reverse transcriptase2.4e-13792.51Show/hide
Query:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW
        MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNW
Subjt:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW

Query:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTV EIRSFL LAGYYRRFVEDFSRIASPLTQLT +GTPFVWSPTCESSFQ+LKQKLVTAPVLTVPDGS SFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLY EKIQIFTDHKSLKYFFTQ ELNMRQRRWLELVK
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK

A0A5A7UHL7 Reverse transcriptase4.1e-13792.13Show/hide
Query:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW
        MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNW
Subjt:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW

Query:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTV EIRSFL LAGYYRRFVEDFSRIASPLTQLT KGTPFVWSP CESSFQELKQKLVTAPVLTVPDGS +FVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK
        SRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI+TDHKSLKYFFTQ ELNMRQRRWLELVK
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK

A0A5A7VMR4 Reverse transcriptase4.1e-13792.13Show/hide
Query:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW
        MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNW
Subjt:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW

Query:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTV EIRSFL LAGYYRRFVEDFSRIASPLTQLT KGTPFVWSP CESSFQELKQKLVTAPVLTVPDGS +FVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK
        SRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI+TDHKSLKYFFTQ ELNMRQRRWLELVK
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK

A0A5D3BSV9 Reverse transcriptase2.4e-13792.51Show/hide
Query:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW
        MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNW
Subjt:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW

Query:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTV EIRSFL LAGYYRRFVEDFSRIASPLTQLT +GTPFVWSPTCESSFQ+LKQKLVTAPVLTVPDGS SFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLY EKIQIFTDHKSLKYFFTQ ELNMRQRRWLELVK
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVK

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.1e-4938.02Show/hide
Query:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW
        M FGL NAP  F   MN + +  L+   +V++D  +++S +  EH + L  V E L    L  +  KCEF  ++ +FLGHV++ +G+  +P KIE +  +
Subjt:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW

Query:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPF-VWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAY
        P P+  +EI++FL L GYYR+F+ +F+ IA P+T+   K       +P  +S+F++LK  +   P+L VPD +  F + +DAS   LG VL Q G  ++Y
Subjt:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPF-VWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAY

Query:  ASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRW
         SR L  HE NY T + EL A+V+A K +RHYL G   +I +DH+ L + +   + N +  RW
Subjt:  ASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRW

P10401 Retrovirus-related Pol polyprotein from transposon gypsy4.3e-4334.91Show/hide
Query:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW
        + FGL NA ++F   ++ V ++ +     V++D  +I+S+ E +H +H+  VL+ L    +     K  F+ + V +LG +VS +G   DP K++ +  +
Subjt:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW

Query:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQL-----------TTKGTPFVWSPTCESSFQELKQKLVTAPV-LTVPDGSDSFVIYSDASKKGLGC
        P P  V ++RSFL LA YYR F++DF+ IA P+T +            +K  P  ++ T  ++FQ L+  L +  V L  PD    F + +DAS  G+G 
Subjt:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQL-----------TTKGTPFVWSPTCESSFQELKQKLVTAPV-LTVPDGSDSFVIYSDASKKGLGC

Query:  VLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEK-IQIFTDHKSLKYFFTQNELNMRQRRW
        VL Q+G+ +   SR LK  EQNY T++ EL A+V+AL   +++LYG + I IFTDH+ L +       N + +RW
Subjt:  VLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEK-IQIFTDHKSLKYFFTQNELNMRQRRW

P20825 Retrovirus-related Pol polyprotein from transposon 2971.9e-4636.12Show/hide
Query:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW
        M FGL NAP  F   MN + +  L+   +V++D  +I+S +  EH   +  V   L    L  +  KCEF  K+ +FLGH+V+ +G+  +P K++ + ++
Subjt:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW

Query:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPF-VWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAY
        P P+  +EIR+FL L GYYR+F+ +++ IA P+T    K T           +F++LK  ++  P+L +PD    FV+ +DAS   LG VL Q G  +++
Subjt:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPF-VWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAY

Query:  ASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRW
         SR L  HE NY   + EL A+V+A K +RHYL G +  I +DH+ L++     E   +  RW
Subjt:  ASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRW

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.4e-3834.81Show/hide
Query:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW
        M FGL NAP+ F   M   F+D    FV V++D  LI+S++  EH KHL  VLE L+   L  K  KC+F  ++  FLG+ +  + ++    K   + ++
Subjt:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW

Query:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGK-----
        P P TV++ + FL +  YYRRF+ + S+IA P+       +   W+   + + ++LK  L  +PVL   +   ++ + +DASK G+G VL +        
Subjt:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGK-----

Query:  -VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLE
         VV Y S+ L+S ++NYP  +LEL  ++ AL  +R+ L+G+   + TDH SL     +NE   R +RWL+
Subjt:  -VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLE

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.2e-4031.65Show/hide
Query:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW
        + FGL NAP +F  +++ + ++ +     V+ID  +++S+    H K+L  VL +L    L     K  F   +V FLG++V+++G+  DP K+  ++  
Subjt:  MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNW

Query:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLT-----------TKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCV
        P P++V+E++ FL +  YYR+F++D++++A PLT LT           +   P     T   SF +LK  L ++ +L  P  +  F + +DAS   +G V
Subjt:  PRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLT-----------TKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCV

Query:  LMQ----QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE-KIQIFTDHKSLKYFFTQNELNMRQRRW
        L Q    + + +AY SR L   E+NY T + E+ A++++L   R YLYG   I+++TDH+ L +       N + +RW
Subjt:  LMQ----QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE-KIQIFTDHKSLKYFFTQNELNMRQRRW

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein5.4e-2541.98Show/hide
Query:  HLHQVLETLRANRLYAKFSKCEFWLKKVSFLG--HVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVW
        HL  VL+    ++ YA   KC F   ++++LG  H++S EGVS DPAK+E +  WP P    E+R FL L GYYRRFV+++ +I  PLT+L  K +   W
Subjt:  HLHQVLETLRANRLYAKFSKCEFWLKKVSFLG--HVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVW

Query:  SPTCESSFQELKQKLVTAPVLTVPDGSDSFV
        +     +F+ LK  + T PVL +PD    FV
Subjt:  SPTCESSFQELKQKLVTAPVLTVPDGSDSFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTTGGTTTGACTAATGCTCCTACGGTATTCATGGTCTTGATGAACAAGGTGTTTAAGGACTTCCTAGACTCGTTCGTCATAGTTTTCATTGATTACTTCTTGAT
TTACTCCAAGACTGAGGTTGAGCATGAGAAGCACTTGCACCAAGTTTTGGAGACTCTTCGAGCCAATAGATTGTATGCCAAGTTCTCCAAGTGCGAGTTCTGGCTGAAGA
AGGTATCTTTCCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTATGGATCCAGCAAAGATCGAAACGGTTACCAATTGGCCTCGACCATCTACAGTTAGAGAGATTCGT
AGTTTCCTTTGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCACGTATAGCCAGCCCCTTGACCCAGTTGACCACGAAGGGAACCCCTTTTGTTTGGAGCCC
AACTTGCGAGAGTAGCTTCCAGGAGCTTAAGCAGAAGCTAGTAACTGCACCAGTCCTGACAGTCCCCGATGGGTCGGACAGTTTTGTGATCTACAGTGATGCCTCCAAAA
AGGGACTGGGCTGTGTGTTGATGCAGCAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACCCACGACTTAGAGTTGGCAGCA
GTGGTCTTTGCACTGAAGATATGGAGGCACTATCTGTATGGTGAGAAGATACAGATCTTCACTGATCATAAGAGCTTGAAGTACTTCTTCACCCAGAATGAGCTAAACAT
GAGGCAGAGAAGGTGGCTTGAGTTAGTGAAACTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTTGGTTTGACTAATGCTCCTACGGTATTCATGGTCTTGATGAACAAGGTGTTTAAGGACTTCCTAGACTCGTTCGTCATAGTTTTCATTGATTACTTCTTGAT
TTACTCCAAGACTGAGGTTGAGCATGAGAAGCACTTGCACCAAGTTTTGGAGACTCTTCGAGCCAATAGATTGTATGCCAAGTTCTCCAAGTGCGAGTTCTGGCTGAAGA
AGGTATCTTTCCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTATGGATCCAGCAAAGATCGAAACGGTTACCAATTGGCCTCGACCATCTACAGTTAGAGAGATTCGT
AGTTTCCTTTGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCACGTATAGCCAGCCCCTTGACCCAGTTGACCACGAAGGGAACCCCTTTTGTTTGGAGCCC
AACTTGCGAGAGTAGCTTCCAGGAGCTTAAGCAGAAGCTAGTAACTGCACCAGTCCTGACAGTCCCCGATGGGTCGGACAGTTTTGTGATCTACAGTGATGCCTCCAAAA
AGGGACTGGGCTGTGTGTTGATGCAGCAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACCCACGACTTAGAGTTGGCAGCA
GTGGTCTTTGCACTGAAGATATGGAGGCACTATCTGTATGGTGAGAAGATACAGATCTTCACTGATCATAAGAGCTTGAAGTACTTCTTCACCCAGAATGAGCTAAACAT
GAGGCAGAGAAGGTGGCTTGAGTTAGTGAAACTGTGA
Protein sequenceShow/hide protein sequence
MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIR
SFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAA
VVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVKL