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Cmc12g0322081 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0322081
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr12:9607289..9607567
RNA-Seq ExpressionCmc12g0322081
SyntenyCmc12g0322081
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]1.2e-3176.92Show/hide
Query:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR
        KLDL SGYYQVRIA+ DE KTT V R+GAFEFLVM FGLTN+  TFC +MNQVFHEYLDQFVVVYLDDIVV+S +L+EHQ+H+ L+FDKLR
Subjt:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]1.5e-3278.02Show/hide
Query:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR
        KLDL SGYYQVRIA+ DE KTT V R+GAFEFLVMPFGLTN+  TFC +MNQVFHEYLDQFVVVYLDDIVV+S +L+EHQ+H+ L+FDKLR
Subjt:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR

XP_022975516.1 uncharacterized protein LOC111474945, partial [Cucurbita maxima]2.5e-3278.02Show/hide
Query:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR
        KLDL SGYYQVRIA+ DE KTT V R+GAFEFLVMPFGLTN+  TFC LMNQVF+EYLDQFV+VYLDDIVV+S++LEEH+VH+ L+FDKLR
Subjt:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR

XP_023526180.1 uncharacterized protein LOC111789739 [Cucurbita pepo subsp. pepo]2.5e-3278.02Show/hide
Query:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR
        KLDL SGYYQVRIA+ DE KTT V R+GAFEFLVMPFGLTN+  TFC LMNQVF+EYLDQFV+VYLDDIVV+S++LEEH+VH+ L+FDKLR
Subjt:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR

XP_023537907.1 uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]2.5e-3278.02Show/hide
Query:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR
        KLDL SGYYQVRIA+ DE KTT V R+GAFEFLVMPFGLTN+  TFC LMNQVF+EYLDQFV+VYLDDIVV+S++LEEH+VH+ L+FDKLR
Subjt:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR

TrEMBL top hitse value%identityAlignment
A0A2P6QT29 Putative nucleotidyltransferase, Ribonuclease H1.1e-3075.82Show/hide
Query:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR
        KLDL SGYYQVRIA+ DE KT  V R+GAFEFLVMPFGLTN+  TFC LMNQVFHEYLD+FVVVYLDDIVV+SS+LEEH  H+ L+F +LR
Subjt:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR

A0A5D3E7V6 RNA-directed DNA polymerase-like protein1.5e-3074.73Show/hide
Query:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR
        KLDL SGYYQVRIA+ DESKTT V R+GAFEFLVMPFGLTN+  TFC LMNQVFHEYLD+FVVVYLDDIVV+S+++EEH+ H+  +F KL+
Subjt:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR

A0A6J1D906 Reverse transcriptase6.0e-3276.92Show/hide
Query:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR
        KLDL SGYYQVRIA+ DE KTT V R+GAFEFLVM FGLTN+  TFC +MNQVFHEYLDQFVVVYLDDIVV+S +L+EHQ+H+ L+FDKLR
Subjt:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR

A0A6J1DK29 uncharacterized protein LOC1110218297.1e-3378.02Show/hide
Query:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR
        KLDL SGYYQVRIA+ DE KTT V R+GAFEFLVMPFGLTN+  TFC +MNQVFHEYLDQFVVVYLDDIVV+S +L+EHQ+H+ L+FDKLR
Subjt:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR

A0A6J1IEF9 uncharacterized protein LOC1114749451.2e-3278.02Show/hide
Query:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR
        KLDL SGYYQVRIA+ DE KTT V R+GAFEFLVMPFGLTN+  TFC LMNQVF+EYLDQFV+VYLDDIVV+S++LEEH+VH+ L+FDKLR
Subjt:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.8e-1542.7Show/hide
Query:  LDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKL
        +DL  G++Q+ +  +  SKT +  + G +E+L MPFGL N+  TF   MN +    L++  +VYLDDI+VFS+SL+EH   + L+F+KL
Subjt:  LDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKL

P20825 Retrovirus-related Pol polyprotein from transposon 2973.2e-1441.57Show/hide
Query:  LDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKL
        +DL  G++Q+ + ++  SKT +  + G +E+L MPFGL N+  TF   MN +    L++  +VYLDDI++FS+SL EH   + L+F KL
Subjt:  LDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKL

P31843 RNA-directed DNA polymerase homolog1.1e-2566.29Show/hide
Query:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVV---FSSSLEEHQVHMWLI
        KLDL SGY+QVRIA+ DE KTT V R+G+FEF VMPFGLTN+  TFCNLMN V +EYLD FVVVYLDD+VV   +S+SL EH  H+ ++
Subjt:  KLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVV---FSSSLEEHQVHMWLI

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein6.5e-1545.56Show/hide
Query:  LDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR
        LDL SGY+Q+ +  KD  KT +V   G +E+ VMPFGL N+  TF   M   F +   +FV VYLDDI++FS S EEH  H+  + ++L+
Subjt:  LDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR

Q99315 Transposon Ty3-G Gag-Pol polyprotein6.5e-1545.56Show/hide
Query:  LDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR
        LDL SGY+Q+ +  KD  KT +V   G +E+ VMPFGL N+  TF   M   F +   +FV VYLDDI++FS S EEH  H+  + ++L+
Subjt:  LDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTTGATCTTTGGTCAGGCTACTATCAAGTTCGAATAGCACAAAAGGATGAATCGAAGACTACATATGTTAGAAGGTTTGGGGCCTTCGAATTTCTCGTAATGCC
CTTCGGCTTAACCAATTCCCATGTAACCTTTTGCAACTTAATGAATCAGGTGTTCCACGAATATCTAGATCAATTTGTGGTGGTCTATCTCGATGACATTGTGGTTTTCA
GCTCTAGCCTTGAAGAACACCAGGTCCATATGTGGTTAATCTTTGATAAGCTCCGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTTGATCTTTGGTCAGGCTACTATCAAGTTCGAATAGCACAAAAGGATGAATCGAAGACTACATATGTTAGAAGGTTTGGGGCCTTCGAATTTCTCGTAATGCC
CTTCGGCTTAACCAATTCCCATGTAACCTTTTGCAACTTAATGAATCAGGTGTTCCACGAATATCTAGATCAATTTGTGGTGGTCTATCTCGATGACATTGTGGTTTTCA
GCTCTAGCCTTGAAGAACACCAGGTCCATATGTGGTTAATCTTTGATAAGCTCCGATAA
Protein sequenceShow/hide protein sequence
MKLDLWSGYYQVRIAQKDESKTTYVRRFGAFEFLVMPFGLTNSHVTFCNLMNQVFHEYLDQFVVVYLDDIVVFSSSLEEHQVHMWLIFDKLR