; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc12g0322441 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0322441
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr12:10282079..10282900
RNA-Seq ExpressionCmc12g0322441
SyntenyCmc12g0322441
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005852 - eukaryotic translation initiation factor 3 complex (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR016197 - Chromo-like domain superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032312.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]7.5e-12581.27Show/hide
Query:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER
        MFRLAG  LN+STAYHPQSDGQTEVVNRGLETYL CFC ERPKE VSWLPW E+WYNTTF+RSLG SPFQVLYGRKPPSL+SYG GTTTNSTLA+QL ER
Subjt:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER

Query:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG
         TVL ALR+QLLL  QQMKQYADKKRRHVE++VG+WV LKIRPYRQ SLRKKRN+KLS KYFGPYEI  KV TVAYKLDLP    IHPVFHVSQLK FVG
Subjt:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG

Query:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL
        D+T +QPT QFVNENLEWQAQPEE L+YQKN AG WEVLIRWK+L +HEA WE Y+EIQQ +PTFHL
Subjt:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL

KAA0040959.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.8e-15697.8Show/hide
Query:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER
        MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKEC+SWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTT+STLAEQLNER
Subjt:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER

Query:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG
        DT+LVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIR YRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG
Subjt:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG

Query:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHLVTLRTR
        DQTEVQPT+QFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQ+LYPTFHLVTLRTR
Subjt:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHLVTLRTR

KAA0050450.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.0e-11374.53Show/hide
Query:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER
        MFRLAGT LNKSTAYH QSDGQTEVVNRGLETYLRCFC E+PKE VSWL W E WYNTTF R+L VS FQV+YGRKPP L+SYGEG T+NSTL EQL ER
Subjt:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER

Query:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG
        D +L ALR+ L+LAQQQMKQYAD KRR VEY VG+ VFLKIRP+RQ +LR+KRNEKLS KYFGPY+I+E++GTV YKLDLPA TSI+ +FHVSQLK+ VG
Subjt:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG

Query:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL
        D T VQPT Q++NENLEWQAQPE+ L+Y+KN A GWEVLI WK    HEA WE Y+EI QLYP  HL
Subjt:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL

KAA0062882.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]2.7e-10668.16Show/hide
Query:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER
        +F++AGT L KST YHPQ+DGQTEVVNRGLETYLRCFC ERPKE + WLPWAE+WYNTT+ ++LG SPFQV+YGRKPP+L+SYGE  T+NS++ EQL ER
Subjt:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER

Query:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG
        D  L ALR+ LLLAQQQMK YAD+KRRHVE+ V E V LKIRPYRQ +LR KRNEKLSS+YFGPY+ILE++G VAY+L+LP   +IHPVFHVSQLK+FV 
Subjt:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG

Query:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL
         QT + PT Q + E  EWQ+QPEEAL Y+++ +G WEVLI WK+L ++EA WE Y+EI Q YP  HL
Subjt:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL

TYK05590.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.0e-11781.65Show/hide
Query:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER
        +FRLAGT LNKSTAYHP+S+GQTEVVNRGLETYL CFC                          GVS FQVLYGRKPPSLISYGEGTTTNSTLAEQL+ER
Subjt:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER

Query:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG
        DTVL ALR+QLLLAQQQMKQYADKKRRHVEYD+GEWVFL IRPYRQ SLRKKRNEKLS KYFGP EILEKVG VAYKLDLPATTSIHPVFHVSQLK+FVG
Subjt:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG

Query:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL
        DQT VQPT QFVNENLEWQAQ EEALKYQKNSAGGWEVLIRWKDL EHEA WECYNEIQ+L PTFHL
Subjt:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL

TrEMBL top hitse value%identityAlignment
A0A5A7TI22 Transposon Ty3-G Gag-Pol polyprotein1.4e-15697.8Show/hide
Query:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER
        MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKEC+SWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTT+STLAEQLNER
Subjt:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER

Query:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG
        DT+LVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIR YRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG
Subjt:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG

Query:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHLVTLRTR
        DQTEVQPT+QFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQ+LYPTFHLVTLRTR
Subjt:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHLVTLRTR

A0A5A7U5F9 Ty3/gypsy retrotransposon protein1.4e-11374.53Show/hide
Query:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER
        MFRLAGT LNKSTAYH QSDGQTEVVNRGLETYLRCFC E+PKE VSWL W E WYNTTF R+L VS FQV+YGRKPP L+SYGEG T+NSTL EQL ER
Subjt:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER

Query:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG
        D +L ALR+ L+LAQQQMKQYAD KRR VEY VG+ VFLKIRP+RQ +LR+KRNEKLS KYFGPY+I+E++GTV YKLDLPA TSI+ +FHVSQLK+ VG
Subjt:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG

Query:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL
        D T VQPT Q++NENLEWQAQPE+ L+Y+KN A GWEVLI WK    HEA WE Y+EI QLYP  HL
Subjt:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL

A0A5A7V3R8 Eukaryotic translation initiation factor 3 30 kDa subunit1.3e-10668.16Show/hide
Query:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER
        +F++AGT L KST YHPQ+DGQTEVVNRGLETYLRCFC ERPKE + WLPWAE+WYNTT+ ++LG SPFQV+YGRKPP+L+SYGE  T+NS++ EQL ER
Subjt:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER

Query:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG
        D  L ALR+ LLLAQQQMK YAD+KRRHVE+ V E V LKIRPYRQ +LR KRNEKLSS+YFGPY+ILE++G VAY+L+LP   +IHPVFHVSQLK+FV 
Subjt:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG

Query:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL
         QT + PT Q + E  EWQ+QPEEAL Y+++ +G WEVLI WK+L ++EA WE Y+EI Q YP  HL
Subjt:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL

A0A5D3BJH1 Transposon Ty3-G Gag-Pol polyprotein3.6e-12581.27Show/hide
Query:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER
        MFRLAG  LN+STAYHPQSDGQTEVVNRGLETYL CFC ERPKE VSWLPW E+WYNTTF+RSLG SPFQVLYGRKPPSL+SYG GTTTNSTLA+QL ER
Subjt:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER

Query:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG
         TVL ALR+QLLL  QQMKQYADKKRRHVE++VG+WV LKIRPYRQ SLRKKRN+KLS KYFGPYEI  KV TVAYKLDLP    IHPVFHVSQLK FVG
Subjt:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG

Query:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL
        D+T +QPT QFVNENLEWQAQPEE L+YQKN AG WEVLIRWK+L +HEA WE Y+EIQQ +PTFHL
Subjt:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL

A0A5D3C2K8 Transposon Ty3-G Gag-Pol polyprotein9.6e-11881.65Show/hide
Query:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER
        +FRLAGT LNKSTAYHP+S+GQTEVVNRGLETYL CFC                          GVS FQVLYGRKPPSLISYGEGTTTNSTLAEQL+ER
Subjt:  MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNER

Query:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG
        DTVL ALR+QLLLAQQQMKQYADKKRRHVEYD+GEWVFL IRPYRQ SLRKKRNEKLS KYFGP EILEKVG VAYKLDLPATTSIHPVFHVSQLK+FVG
Subjt:  DTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVG

Query:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL
        DQT VQPT QFVNENLEWQAQ EEALKYQKNSAGGWEVLIRWKDL EHEA WECYNEIQ+L PTFHL
Subjt:  DQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHL

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.2e-1629.9Show/hide
Query:  STAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLY----GRKPPSLISYGEGTTTNSTLAEQLNERDTVLVAL
        S  Y PQ+DGQTE  N+ +E  LRC C   P   V  +   +  YN   H +  ++PF++++       P  L S+ + T  NS       E   V   +
Subjt:  STAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLY----GRKPPSLISYGEGTTTNSTLAEQLNERDTVLVAL

Query:  RDQLLLAQQQMKQYADKKRRHV-EYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTS--IHPVFHVSQLKEF
        ++ L     +MK+Y D K + + E+  G+ V +K    R  +    ++ KL+  + GP+ +L+K G   Y+LDLP +        FHVS L+++
Subjt:  RDQLLLAQQQMKQYADKKRRHV-EYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTS--IHPVFHVSQLKEF

P0CT41 Transposon Tf2-12 polyprotein1.2e-1629.9Show/hide
Query:  STAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLY----GRKPPSLISYGEGTTTNSTLAEQLNERDTVLVAL
        S  Y PQ+DGQTE  N+ +E  LRC C   P   V  +   +  YN   H +  ++PF++++       P  L S+ + T  NS       E   V   +
Subjt:  STAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLY----GRKPPSLISYGEGTTTNSTLAEQLNERDTVLVAL

Query:  RDQLLLAQQQMKQYADKKRRHV-EYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTS--IHPVFHVSQLKEF
        ++ L     +MK+Y D K + + E+  G+ V +K    R  +    ++ KL+  + GP+ +L+K G   Y+LDLP +        FHVS L+++
Subjt:  RDQLLLAQQQMKQYADKKRRHV-EYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTS--IHPVFHVSQLKEF

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.2e-1729.47Show/hide
Query:  GTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKP--PSLISYGEGTTTNSTLAEQLNERDTV
        G     S+A HPQ+DGQ+E   + L   LR +     +    +LP  E  YN+T  R+LG SPF++  G  P  P++ S  E    + T  E       +
Subjt:  GTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKP--PSLISYGEGTTTNSTLAEQLNERDTV

Query:  LVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVGDQT
         +  ++QL  AQ +M+   +++R+ +  ++G+ V +    +R    +K    K+   Y GP+ +++K+   AY+LDL +    H V +V  LK     QT
Subjt:  LVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVGDQT

Query:  EVQPTSQ
          Q  +Q
Subjt:  EVQPTSQ

Q99315 Transposon Ty3-G Gag-Pol polyprotein2.4e-1730.1Show/hide
Query:  GTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKP--PSLISYGEGTTTNSTLAEQLNERDTV
        G     S+A HPQ+DGQ+E   + L   LR +     +    +LP  E  YN+T  R+LG SPF++  G  P  P++ S  E    + T  E       +
Subjt:  GTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKP--PSLISYGEGTTTNSTLAEQLNERDTV

Query:  LVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFV
         +  ++QL  AQ +M+   +++R+ +  ++G+ V +    +R    +K    K+   Y GP+ +++K+   AY+LDL +    H V +V  LK+FV
Subjt:  LVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFV

Q9UR07 Transposon Tf2-11 polyprotein1.2e-1629.9Show/hide
Query:  STAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLY----GRKPPSLISYGEGTTTNSTLAEQLNERDTVLVAL
        S  Y PQ+DGQTE  N+ +E  LRC C   P   V  +   +  YN   H +  ++PF++++       P  L S+ + T  NS       E   V   +
Subjt:  STAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLY----GRKPPSLISYGEGTTTNSTLAEQLNERDTVLVAL

Query:  RDQLLLAQQQMKQYADKKRRHV-EYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTS--IHPVFHVSQLKEF
        ++ L     +MK+Y D K + + E+  G+ V +K    R  +    ++ KL+  + GP+ +L+K G   Y+LDLP +        FHVS L+++
Subjt:  RDQLLLAQQQMKQYADKKRRHV-EYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTS--IHPVFHVSQLKEF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCGATTAGCTGGCACAATGTTGAATAAGAGTACAGCCTATCATCCGCAATCTGATGGCCAAACAGAAGTAGTTAACAGGGGGTTAGAGACCTACCTACGTTGTTT
TTGCGGTGAGAGACCGAAGGAGTGTGTGTCGTGGCTACCGTGGGCAGAACATTGGTACAACACCACTTTTCATCGGTCACTAGGCGTTTCGCCTTTCCAGGTGTTGTATG
GCAGGAAACCTCCATCGTTGATATCGTATGGGGAGGGTACCACAACTAATTCCACGTTGGCAGAACAGTTGAATGAAAGAGATACAGTCTTGGTTGCTCTTCGGGATCAG
TTGTTATTGGCACAACAACAAATGAAACAATATGCTGATAAGAAGAGGAGACATGTAGAATATGACGTTGGTGAATGGGTCTTTTTGAAGATTAGGCCTTATCGACAGTT
TTCGTTAAGAAAGAAACGAAATGAGAAATTATCCTCCAAGTATTTTGGGCCTTATGAGATTTTGGAGAAGGTGGGTACAGTGGCATATAAGTTAGACTTACCAGCCACTA
CATCTATTCATCCAGTTTTTCATGTTTCCCAGTTGAAAGAGTTTGTTGGGGATCAAACTGAAGTACAACCGACCAGTCAGTTTGTCAATGAGAACTTAGAATGGCAAGCT
CAGCCGGAAGAAGCTTTGAAGTATCAGAAGAACAGTGCTGGTGGTTGGGAGGTTTTGATCCGTTGGAAAGATTTGTCGGAACATGAAGCTCCGTGGGAATGTTATAACGA
AATCCAGCAGTTGTACCCCACTTTTCACCTTGTCACCTTGAGGACAAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCCGATTAGCTGGCACAATGTTGAATAAGAGTACAGCCTATCATCCGCAATCTGATGGCCAAACAGAAGTAGTTAACAGGGGGTTAGAGACCTACCTACGTTGTTT
TTGCGGTGAGAGACCGAAGGAGTGTGTGTCGTGGCTACCGTGGGCAGAACATTGGTACAACACCACTTTTCATCGGTCACTAGGCGTTTCGCCTTTCCAGGTGTTGTATG
GCAGGAAACCTCCATCGTTGATATCGTATGGGGAGGGTACCACAACTAATTCCACGTTGGCAGAACAGTTGAATGAAAGAGATACAGTCTTGGTTGCTCTTCGGGATCAG
TTGTTATTGGCACAACAACAAATGAAACAATATGCTGATAAGAAGAGGAGACATGTAGAATATGACGTTGGTGAATGGGTCTTTTTGAAGATTAGGCCTTATCGACAGTT
TTCGTTAAGAAAGAAACGAAATGAGAAATTATCCTCCAAGTATTTTGGGCCTTATGAGATTTTGGAGAAGGTGGGTACAGTGGCATATAAGTTAGACTTACCAGCCACTA
CATCTATTCATCCAGTTTTTCATGTTTCCCAGTTGAAAGAGTTTGTTGGGGATCAAACTGAAGTACAACCGACCAGTCAGTTTGTCAATGAGAACTTAGAATGGCAAGCT
CAGCCGGAAGAAGCTTTGAAGTATCAGAAGAACAGTGCTGGTGGTTGGGAGGTTTTGATCCGTTGGAAAGATTTGTCGGAACATGAAGCTCCGTGGGAATGTTATAACGA
AATCCAGCAGTTGTACCCCACTTTTCACCTTGTCACCTTGAGGACAAGGTGA
Protein sequenceShow/hide protein sequence
MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNERDTVLVALRDQ
LLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVGDQTEVQPTSQFVNENLEWQA
QPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHLVTLRTR