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Cmc12g0322501 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0322501
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTudor domain-containing protein
Genome locationCMiso1.1chr12:10407048..10412474
RNA-Seq ExpressionCmc12g0322501
SyntenyCmc12g0322501
Gene Ontology termsGO:0007064 - mitotic sister chromatid cohesion (biological process)
InterPro domainsIPR039776 - Sister chromatid cohesion protein Pds5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040949.1 protein starmaker [Cucumis melo var. makuwa]1.4e-3791.4Show/hide
Query:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAML
        MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRI+APNAPYSDG+MKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRV++ +A +
Subjt:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAML

KAB5553407.1 hypothetical protein DKX38_010718 [Salix brachista]2.1e-3381.63Show/hide
Query:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDALI
        AL+PSQNALV+D+LLRHSNI+VKVAVAAC+SEITRI AP+APY D  MKEVF LIVSSFENL DKSS+SYVK ASILETV +VRS V MLDLECDALI
Subjt:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDALI

TYK20310.1 cytoplasmic tRNA 2-thiolation protein 1 isoform X2 [Cucumis melo var. makuwa]1.4e-3791.4Show/hide
Query:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAML
        MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRI+APNAPYSDG+MKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRV++ +A +
Subjt:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAML

XP_038895726.1 sister chromatid cohesion protein PDS5-like isoform X1 [Benincasa hispida]2.7e-3379.21Show/hide
Query:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDAL
        M  ALTPS  ALVSD+LL+HS+I+VK++VAAC+SEITRI APNAPYS+  MKEVFHLIVSSFENLSDKSSRSY K ASILETV +VRS V MLDLECDAL
Subjt:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDAL

Query:  I
        I
Subjt:  I

XP_038895728.1 uncharacterized protein LOC120083890 isoform X2 [Benincasa hispida]2.7e-3379.21Show/hide
Query:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDAL
        M  ALTPS  ALVSD+LL+HS+I+VK++VAAC+SEITRI APNAPYS+  MKEVFHLIVSSFENLSDKSSRSY K ASILETV +VRS V MLDLECDAL
Subjt:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDAL

Query:  I
        I
Subjt:  I

TrEMBL top hitse value%identityAlignment
A0A0A0LM52 Uncharacterized protein3.4e-3481.19Show/hide
Query:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDAL
        M IALTPS  ALVSD+LLRHSNI+VKV+VAAC+SEITRI AP+APYSD  MKEVFHLIVSSFE+LSDKSSRSY K ASILETV +VRS V MLDLECD L
Subjt:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDAL

Query:  I
        I
Subjt:  I

A0A2K1WUI4 Tudor domain-containing protein1.7e-3380.61Show/hide
Query:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDALI
        AL+PSQNALV+D+L RHSNI+VKVAVA+C+SEITRI AP+APY D  MKEVF LIVSSFENL DKSSRSYVK ASILETV +VRS V MLDLECDALI
Subjt:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDALI

A0A5A7TI13 Protein starmaker6.7e-3891.4Show/hide
Query:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAML
        MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRI+APNAPYSDG+MKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRV++ +A +
Subjt:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAML

A0A5D3DA09 Cytoplasmic tRNA 2-thiolation protein 1 isoform X26.7e-3891.4Show/hide
Query:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAML
        MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRI+APNAPYSDG+MKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRV++ +A +
Subjt:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAML

A0A5N5MEB5 Tudor domain-containing protein1.0e-3381.63Show/hide
Query:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDALI
        AL+PSQNALV+D+LLRHSNI+VKVAVAAC+SEITRI AP+APY D  MKEVF LIVSSFENL DKSS+SYVK ASILETV +VRS V MLDLECDALI
Subjt:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDALI

SwissProt top hitse value%identityAlignment
Q04264 Sister chromatid cohesion protein PDS51.4e-1134.04Show/hide
Query:  LIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDL
        L  L   ++ALVS +LL+H ++ ++   A C+S+I R+ AP+APY+D  + ++F L++S FE L D+ +  +++   ++  +   RS V + DL
Subjt:  LIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDL

Q4VA53 Sister chromatid cohesion protein PDS5 homolog B2.0e-0736.05Show/hide
Query:  LVSDRLLRHSNINVKVAVAACVSEITRILAPNAPY-SDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLE
        L SD  L+H + +V++ VA C+++I RI AP APY S   +K++F  I    + L D  S  + +   +LE +  V+SY    +LE
Subjt:  LVSDRLLRHSNINVKVAVAACVSEITRILAPNAPY-SDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLE

Q5F3U9 Sister chromatid cohesion protein PDS5 homolog B2.0e-0736.05Show/hide
Query:  LVSDRLLRHSNINVKVAVAACVSEITRILAPNAPY-SDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLE
        L SD  L+H + +V++ VA C+++I RI AP APY S   +K++F  I    + L D  S  + +   +LE +  V+SY    +LE
Subjt:  LVSDRLLRHSNINVKVAVAACVSEITRILAPNAPY-SDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLE

Q5U241 Sister chromatid cohesion protein PDS5 homolog B-B2.0e-0736.05Show/hide
Query:  LVSDRLLRHSNINVKVAVAACVSEITRILAPNAPY-SDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLE
        L SD  L+H + +V++ VA C+++I RI AP APY S   +K++F  I    + L D  S  + +   +LE +  V+SY    +LE
Subjt:  LVSDRLLRHSNINVKVAVAACVSEITRILAPNAPY-SDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLE

Q9NTI5 Sister chromatid cohesion protein PDS5 homolog B2.0e-0736.05Show/hide
Query:  LVSDRLLRHSNINVKVAVAACVSEITRILAPNAPY-SDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLE
        L SD  L+H + +V++ VA C+++I RI AP APY S   +K++F  I    + L D  S  + +   +LE +  V+SY    +LE
Subjt:  LVSDRLLRHSNINVKVAVAACVSEITRILAPNAPY-SDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLE

Arabidopsis top hitse value%identityAlignment
AT1G15940.1 Tudor/PWWP/MBT superfamily protein7.8e-2354.08Show/hide
Query:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDALI
        AL P   ALVS  LLR+ + +V+V+V +C++EI RI AP APY+D  MK++F + + +FE L+D SSRSY K   ILETV +VRS + MLDLECD L+
Subjt:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDALI

AT1G80810.1 Tudor/PWWP/MBT superfamily protein1.3e-2253.47Show/hide
Query:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDAL
        M  AL PS+NALVS  LL H + +V+V+V +C++EI RI AP  PYSD  MKE+F L + +FE L+D SSRSY K   +L+ V +V+S + MLDLEC  L
Subjt:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDAL

Query:  I
        I
Subjt:  I

AT1G80810.2 Tudor/PWWP/MBT superfamily protein1.3e-2253.47Show/hide
Query:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDAL
        M  AL PS+NALVS  LL H + +V+V+V +C++EI RI AP  PYSD  MKE+F L + +FE L+D SSRSY K   +L+ V +V+S + MLDLEC  L
Subjt:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDAL

Query:  I
        I
Subjt:  I

AT4G31880.1 LOCATED IN: cytosol, chloroplast1.6e-3170.41Show/hide
Query:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDALI
        ALTP    LV  +L +HS+++VKVAVAAC+SEITRI AP+APY D  MKEVF LIVSSFE+L DKSSRSY K  SILETV +VRS V MLDLECDAL+
Subjt:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDALI

AT4G31880.2 LOCATED IN: cytosol1.6e-3170.41Show/hide
Query:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDALI
        ALTP    LV  +L +HS+++VKVAVAAC+SEITRI AP+APY D  MKEVF LIVSSFE+L DKSSRSY K  SILETV +VRS V MLDLECDAL+
Subjt:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDALI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAATTGCGCTCACTCCATCACAGAATGCCTTGGTTTCTGATCGACTTCTTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAAC
TCGGATCCTTGCACCTAATGCCCCTTACAGTGATGGAAGTATGAAGGAGGTATTTCATCTTATAGTATCATCCTTTGAAAATCTCTCTGACAAGTCAAGTCGATCATATG
TAAAATGCGCATCCATTCTTGAAACTGTTCCGAGGGTCAGATCATATGTGGCCATGCTGGATTTGGAATGTGATGCATTGATATGTTCCAACATTTCCTTAAGACAGTAA
mRNA sequenceShow/hide mRNA sequence
TTTCATTTTAACAAAACCCTAAAATTTCGTATCTATAACAATTTTCCTATCTTGAACCTTTCCCCGAAGGGTGTCCAACAGCTGCTTTTGGAAGTTGGCAATAGATCCTC
GACCACCCTACTTCAGTTGAAGAACTTCTATCTCTTCTCGACAAAATTGAGCGTTTGCTGGCAAAAGTTAAACAATCCCCTTCAAAATCAATGCTAATTGCGCTCACTCC
ATCACAGAATGCCTTGGTTTCTGATCGACTTCTTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAACTCGGATCCTTGCACCTAATG
CCCCTTACAGTGATGGAAGTATGAAGGAGGTATTTCATCTTATAGTATCATCCTTTGAAAATCTCTCTGACAAGTCAAGTCGATCATATGTAAAATGCGCATCCATTCTT
GAAACTGTTCCGAGGGTCAGATCATATGTGGCCATGCTGGATTTGGAATGTGATGCATTGATATGTTCCAACATTTCCTTAAGACAGTAAGGCTCTTGATCGAGGTGCTG
CATTGTTGAAAGTAGTCAAGCTTGCCACAAGGCACAATGCAATTGATATGGCTGAAACAGTTCTATTAGATATATTATGAGGTGATATTGCCAGATGTACTGCAATAAGT
ACCGATGAAGATGGACCAATTCCAAGATGCAAACCTTTCAAGTACACATATGAAAAGAAGATAGTAGTATATTTTTATATTTTAGTCTCATAGCTCTAGAGCAAGTCTTG
CATCATGCAGCACTCAATTTGTTTATTGGTTGATTCTAGTTGTAAACCTTAACGATAGATGTTCACGTATGGTTACTTCAAGAAGCTGGACTACTTCTCCACCGAGTAAT
TCAAGAACTTTCCAAGTTTCAACAAATTAGAGACTTTGTTGAAGTTGTTTGAATGAATCTATCACTTTACATGGAAATAGGAATCAGGCTTTGACGGGAATGGAAAGTAC
CTTTTTCTAGCTTTTCATAGTAGTGCTCATTCAGCAGTCTCCTTCCTTTGGAGGATTTTCTTGACAACCACGACAACAAGAAGCAGAAGCAGGGGGAGCTGTAAAATGTC
ACTCATAATTTAACTCATCAAATTGTGAAGGACAAAAGGGTTTATGTTCTGTGGATCATTGCTGGAGCCACAATTCAGTGGATAAAGTGCCTAATTCACAAGAAACTTCT
CAGACTTGGACGTAGGAAGGAATTCTTGTATTTTTTGAATAATGTTGGTGAAAATGCCATAAGAAGCTGTCTGTTTAAGGGGAGTTCTCCATGTATTTTTATGAATCTTT
TTCTGAAAAAGAGAGTTCCTGTCTTGGTCTCTACATGATTTTCATTTGACTTCAACGATTGAAGATTTTTAGCCGTGGTTTTTCAGTGCCCCACAAGCTTTTTGTTTTTA
C
Protein sequenceShow/hide protein sequence
MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRILAPNAPYSDGSMKEVFHLIVSSFENLSDKSSRSYVKCASILETVPRVRSYVAMLDLECDALICSNISLRQ