CuGenDBv2

Gene ID	Cmc12g0322511
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr12:10417539..10417943
RNA-Seq Expression	Cmc12g0322511
Synteny	Cmc12g0322511
Gene Ontology terms	NA
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0051719.1 pol protein [Cucumis melo var. makuwa]

7.1e-60

85.82

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Query:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW
        MSF LTNAP VF+DLMN++FKDFLD+FVIVFIDDIL+YSKTEAEHEEHL+Q+LETLRANKLYAKFS+CEFWL+KV+FLGHVVSSEGVSVDP KI+AVT+W
Subjt:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW

Query:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT
        PRPST+SE+RSFLGLA YYRRFVEDFS IASPLT
Subjt:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT

KAA0061277.1 pol protein [Cucumis melo var. makuwa]

2.4e-60

87.31

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Query:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW
        MSF LTNAP VF+DLMN++FKDFLDTFVIVFIDDIL+YSKTEAEHEEHL+++LETLRANKLYAKFS+C+FWLKKV+FLGHVVSSEGVSVDP KIKAVTSW
Subjt:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW

Query:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT
        PRP T+SE+RSFLGLASYYRRFVEDFS IASPLT
Subjt:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT

KAA0063098.1 pol protein [Cucumis melo var. makuwa]

7.1e-60

85.82

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Query:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW
        MSF LTNAP VF+DLMN++FKDFLD+FVIVFIDDIL+YSKTEAEHEEHL+Q+LETLRANKLYAKFS+CEFWL+KV+FLGHVVSSEGVSVDP KI+AVT+W
Subjt:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW

Query:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT
        PRPST+SE+RSFLGLA YYRRFVEDFS IASPLT
Subjt:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT

TYK05193.1 pol protein [Cucumis melo var. makuwa]

1.9e-60

86.57

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Query:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW
        MSF LTNAP VF+DLMN++FKDFLD+FVIVFIDDIL+YSKTEAEHEEHL+Q+LETLRANKLYAKFS+CEFWL+KV+FLGHVVSSEGVSVDPTKI+AVT+W
Subjt:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW

Query:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT
        PRPST+SE+RSFLGLA YYRRFVEDFS IASPLT
Subjt:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT

TYK18480.1 pol protein [Cucumis melo var. makuwa]

1.9e-60

86.57

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Query:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW
        MSF LTNAP VF+DLMN++FKDFLD+FVIVFIDDIL+YSKTEAEHEEHL+Q+LETLRANKLYAKFS+CEFWL+KV+FLGHVVSSEGVSVDPTKI+AVT+W
Subjt:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW

Query:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT
        PRPST+SE+RSFLGLA YYRRFVEDFS IASPLT
Subjt:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UE01 Reverse transcriptase

3.4e-60

85.82

Show/hide

Query:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW
        MSF LTNAP VF+DLMN++FKDFLD+FVIVFIDDIL+YSKTEAEHEEHL+Q+LETLRANKLYAKFS+CEFWL+KV+FLGHVVSSEGVSVDP KI+AVT+W
Subjt:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW

Query:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT
        PRPST+SE+RSFLGLA YYRRFVEDFS IASPLT
Subjt:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT

A0A5A7V323 Reverse transcriptase

1.2e-60

87.31

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Query:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW
        MSF LTNAP VF+DLMN++FKDFLDTFVIVFIDDIL+YSKTEAEHEEHL+++LETLRANKLYAKFS+C+FWLKKV+FLGHVVSSEGVSVDP KIKAVTSW
Subjt:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW

Query:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT
        PRP T+SE+RSFLGLASYYRRFVEDFS IASPLT
Subjt:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT

A0A5A7V6R2 Reverse transcriptase

3.4e-60

85.82

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Query:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW
        MSF LTNAP VF+DLMN++FKDFLD+FVIVFIDDIL+YSKTEAEHEEHL+Q+LETLRANKLYAKFS+CEFWL+KV+FLGHVVSSEGVSVDP KI+AVT+W
Subjt:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW

Query:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT
        PRPST+SE+RSFLGLA YYRRFVEDFS IASPLT
Subjt:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT

A0A5D3BZN1 Reverse transcriptase

9.0e-61

86.57

Show/hide

Query:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW
        MSF LTNAP VF+DLMN++FKDFLD+FVIVFIDDIL+YSKTEAEHEEHL+Q+LETLRANKLYAKFS+CEFWL+KV+FLGHVVSSEGVSVDPTKI+AVT+W
Subjt:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW

Query:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT
        PRPST+SE+RSFLGLA YYRRFVEDFS IASPLT
Subjt:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT

A0A5D3D4M7 Pol protein

9.0e-61

86.57

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Query:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW
        MSF LTNAP VF+DLMN++FKDFLD+FVIVFIDDIL+YSKTEAEHEEHL+Q+LETLRANKLYAKFS+CEFWL+KV+FLGHVVSSEGVSVDPTKI+AVT+W
Subjt:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW

Query:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT
        PRPST+SE+RSFLGLA YYRRFVEDFS IASPLT
Subjt:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

7.2e-23

38.06

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Query:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW
        M F L NAP  F   MN + +  L+   +V++DDI+V+S +  EH + L  + E L    L  +  +CEF  ++ +FLGHV++ +G+  +P KI+A+  +
Subjt:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW

Query:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT
        P P+   E+++FLGL  YYR+F+ +F+ IA P+T
Subjt:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

1.4e-21

35.07

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Query:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW
        + F L NA  +F   ++ + ++ +     V++DD++++S+ E++H  H+  +L+ L    +     +  F+ + V +LG +VS +G   DP K+KA+  +
Subjt:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW

Query:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT
        P P  + +VRSFLGLASYYR F++DF+ IA P+T
Subjt:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.1e-23

37.31

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Query:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW
        M F L NAP  F   MN + +  L+   +V++DDI+++S +  EH   +  +   L    L  +  +CEF  K+ +FLGH+V+ +G+  +P K+KA+ S+
Subjt:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW

Query:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT
        P P+   E+R+FLGL  YYR+F+ +++ IA P+T
Subjt:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

1.0e-21

33.58

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Query:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW
        + F L NAP +F  +++ + ++ +     V+IDDI+V+S+    H ++L  +L +L    L     +  F   +V FLG++V+++G+  DP K++A++  
Subjt:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW

Query:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT
        P P+++ E++ FLG+ SYYR+F++D++ +A PLT
Subjt:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT

Q99315 Transposon Ty3-G Gag-Pol polyprotein

6.3e-19

36.84

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Query:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW
        M F L NAP  F   M   F+D    FV V++DDIL++S++  EH +HL  +LE L+   L  K  +C+F  ++  FLG+ +  + ++    K  A+  +
Subjt:  MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSW

Query:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPL
        P P T+ + + FLG+ +YYRRF+ + S IA P+
Subjt:  PRPSTISEVRSFLGLASYYRRFVEDFSHIASPL

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

9.3e-18

42.7

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Query:  HLYQILETLRANKLYAKFSECEFWLKKVSFLG--HVVSSEGVSVDPTKIKAVTSWPRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT
        HL  +L+    ++ YA   +C F   ++++LG  H++S EGVS DP K++A+  WP P   +E+R FLGL  YYRRFV+++  I  PLT
Subjt:  HLYQILETLRANKLYAKFSECEFWLKKVSFLG--HVVSSEGVSVDPTKIKAVTSWPRPSTISEVRSFLGLASYYRRFVEDFSHIASPLT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCTTTTGACTTGACAAATGCTCCTGTTGTATTTCTGGATTTGATGAACAAGATGTTTAAGGATTTCCTAGACACTTTTGTTATAGTTTTTATCGATGATATCTTGGT
TTACTCCAAGACAGAGGCTGAACATGAGGAGCATTTGTATCAGATTTTGGAGACTCTTCGAGCCAATAAGCTATATGCTAAGTTTTCTGAGTGTGAGTTTTGGCTGAAGA
AGGTGTCTTTTCTTGGCCATGTGGTGTCCAGTGAGGGAGTTTCGGTAGACCCAACGAAGATTAAAGCTGTTACTAGCTGGCCTCGACCATCTACAATCAGCGAAGTTCGT
AGTTTCCTAGGTTTGGCAAGTTACTACAGAAGGTTCGTGGAAGATTTCTCTCATATAGCCAGTCCTTTGACTTAG

mRNA sequence

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Protein sequence

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MSFDLTNAPVVFLDLMNKMFKDFLDTFVIVFIDDILVYSKTEAEHEEHLYQILETLRANKLYAKFSECEFWLKKVSFLGHVVSSEGVSVDPTKIKAVTSWPRPSTISEVR
SFLGLASYYRRFVEDFSHIASPLT

Cmc12g0322511 (gene) of Melon (Charmono) v1.1 genome