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Cmc12g0325081 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0325081
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon gag protein
Genome locationCMiso1.1chr12:14982524..14983569
RNA-Seq ExpressionCmc12g0325081
SyntenyCmc12g0325081
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025369.1 uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa]6.0e-1152.5Show/hide
Query:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF
        K++   +KV  NP PS  +           YIPK  FPSRLTPKKKE  K+E+LLE   KVQIN+PL  AIQQ+PRC  F
Subjt:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF

KAA0041664.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.0e-1051.25Show/hide
Query:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF
        K++   +KV  NPLPS  +           YIPK  FPS L PKKKE  K+E+LLE F KVQIN+PL +AIQQ+PR   F
Subjt:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF

KAA0046065.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.6e-1052.5Show/hide
Query:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF
        K++   +KV  NP PS  +           YIPK  FPSRL PKKKE  K+E+LLE F KVQIN+PL  AIQQIPR   F
Subjt:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF

KAA0066512.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-1052.5Show/hide
Query:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF
        K++   +KV  NPLPS  +           YIPK  FPSRL PKKKE  K+E+LLE F KVQIN PL  AIQQ+PR   F
Subjt:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF

TYK09433.1 uncharacterized protein E5676_scaffold499G00170 [Cucumis melo var. makuwa]6.6e-1052.5Show/hide
Query:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF
        K++   +KV  NP PS  +           YIPK  FPSRL PKKKE  K+E+LLE F KVQIN+PL  AIQQIPR   F
Subjt:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF

TrEMBL top hitse value%identityAlignment
A0A5A7TE06 Retrotransposon gag protein2.4e-1051.25Show/hide
Query:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF
        K++   +KV  NPLPS  +           YIPK  FPS L PKKKE  K+E+LLE F KVQIN+PL +AIQQ+PR   F
Subjt:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF

A0A5A7TXC8 Retrotransposon gag protein3.2e-1052.5Show/hide
Query:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF
        K++   +KV  NP PS  +           YIPK  FPSRL PKKKE  K+E+LLE F KVQIN+PL  AIQQIPR   F
Subjt:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF

A0A5D3C4I5 Retrotransposon gag protein1.4e-1052.5Show/hide
Query:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF
        K++   +KV  NPLPS  +           YIPK  FPSRL PKKKE  K+E+LLE F KVQIN PL  AIQQ+PR   F
Subjt:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF

A0A5D3CC51 Uncharacterized protein3.2e-1052.5Show/hide
Query:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF
        K++   +KV  NP PS  +           YIPK  FPSRL PKKKE  K+E+LLE F KVQIN+PL  AIQQIPR   F
Subjt:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF

A0A5D3DIP6 Retrotrans_gag domain-containing protein2.9e-1152.5Show/hide
Query:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF
        K++   +KV  NP PS  +           YIPK  FPSRLTPKKKE  K+E+LLE   KVQIN+PL  AIQQ+PRC  F
Subjt:  KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAAAAAAATGAAACACAAGATGTCGACCAAAAAGGTAAGTGCAAATCCTTTGCCTTCAATTCCTCGTTATATTCCTAAAGCTCTCTTTCCTAGTAGGTTGACACC
TAAGAAAAAGGAAGCTTGCAAGGATGAAGATCTTTTGGAAACATTCACAAAGGTCCAAATTAACATTCCACTCCCTAGTGCAATTCAACAAATTCCAAGGTGCAAATCTT
TCAAGGAGCCTTGA
mRNA sequenceShow/hide mRNA sequence
TGGGGGCTTCGGCAAAAGGTATGATCCCCACAGCAGCACTACAACTTTGGATGGAGAGACCTTCTTTACATGAAATGGTAATAAAAAATTAAGAACAAAATGAATGGAGG
CCTTCCTACACTTCTTCTTCTTTTCAAGGCATGTCTCTTGAAGATATTGTAAAAACTTTAGCTAGTAGCTCTCTTAAGTTTCAACAAGACCTTCACCAACTCAACCAAGA
AACCAAATCATTTCAACTAGAAGCAAGGACCGGTCTCACAAATATTGACAACTGAATTACACAATTGGTTACGACAGTTAGTAAACTTGAAAACAAAGTCAAATTGCCCA
CCCAAATTGAATATGCCAACGTTAGTGCTATAACACTTAAAAGTGATTACTCCTACCTTCCGCCACTCAAGAGCCAATTGTGAATACGGATCCTCCTCGATCCAAAGATC
CAAGTTGAGGTAAAGGATGACGAAAAAAATGAAACACAAGATGTCGACCAAAAAGGTAAGTGCAAATCCTTTGCCTTCAATTCCTCGTTATATTCCTAAAGCTCTCTTTC
CTAGTAGGTTGACACCTAAGAAAAAGGAAGCTTGCAAGGATGAAGATCTTTTGGAAACATTCACAAAGGTCCAAATTAACATTCCACTCCCTAGTGCAATTCAACAAATT
CCAAGGTGCAAATCTTTCAAGGAGCCTTGAACTAGAAAGAGGAATGTTAAGGAAAAGAAAAGTGTGATGGTGCTTCTATCAAGATTTGAAATTGAATAACATGGAAAAGA
CAAATGACATTTTATTAGGAAGACCTTTCATGAAAACGGCTAAAACCATTATTGATGTAGAGGCCTCTCTTCATAGAATTTGATGGGATGTCTTTCTTTCAACATCAAGG
ATGCAATGAAATTCCTGGTAGAAAATTTGTCTTTAAGTTTTTAG
Protein sequenceShow/hide protein sequence
MTKKMKHKMSTKKVSANPLPSIPRYIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSFKEP