CuGenDBv2

Gene ID	Cmc12g0325091
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr12:14995026..14995475
RNA-Seq Expression	Cmc12g0325091
Synteny	Cmc12g0325091
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-57

77.18

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Query:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM
        ++LKYL+R R+YM+VY AKDLIL GY +SDFQTDK+ RKST GSVFTLN G +VWRSIKQ CIA+STMEA+Y+ A EAAKEAVWLRKF+HD EVVPNMN+
Subjt:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM

Query:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA
         I LYCDNSG VANSKE  SHKRGK+I+ KYHLIR+IVQRGDVIVTKIA
Subjt:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA

KAA0037131.1 gag/pol protein [Cucumis melo var. makuwa]

3.3e-58

77.85

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Query:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM
        +ILKYL+R R+YM+VY  KDLI IGY NSDFQTDK+FRKST G VFTLN G +VWRSIKQ CIANSTMEA+Y+ A E AKEAVWLRKF HD +VVPN N+
Subjt:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM

Query:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA
         I LYCDNSGTVANSKES SHKRGK+IK KYHLIR+I+QRGDVIVTKIA
Subjt:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA

KAA0042330.1 gag/pol protein [Cucumis melo var. makuwa]

4.6e-76

100

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Query:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM
        MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM
Subjt:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM

Query:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA
        SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA
Subjt:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-57

77.85

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Query:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM
        +ILKYL+R R+YM+VY AKDLIL GY +SDFQTDK+ RKST GSVFTLN G +VWRSIKQ CIA+STMEA+Y+ A EAAKEAVWLRKF+HD EVVPNMN+
Subjt:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM

Query:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA
         I LYCDNSG VANSKE  SHKRGK+I+ KYHLIR+IVQRGDVIVTKIA
Subjt:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA

KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]

7.4e-58

77.85

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Query:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM
        +ILKYL+R R+YM+VY AKDLIL GY +SDFQTDK+ RKST GSVFTLN G +VWRSIKQ CIA+STMEA+Y+ A EAAKEAVWLRKF+HD EVVPNMN+
Subjt:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM

Query:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA
         I LYCDNSG VANSKE  SHKRGK+I+ KYHLIR+IVQRGDVIVTKIA
Subjt:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T6A9 Gag/pol protein

1.6e-58

77.85

Show/hide

Query:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM
        +ILKYL+R R+YM+VY  KDLI IGY NSDFQTDK+FRKST G VFTLN G +VWRSIKQ CIANSTMEA+Y+ A E AKEAVWLRKF HD +VVPN N+
Subjt:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM

Query:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA
         I LYCDNSGTVANSKES SHKRGK+IK KYHLIR+I+QRGDVIVTKIA
Subjt:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA

A0A5A7TG69 Gag/pol protein

2.2e-76

100

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Query:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM
        MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM
Subjt:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM

Query:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA
        SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA
Subjt:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA

A0A5A7TKM4 Gag/pol protein

6.1e-58

77.85

Show/hide

Query:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM
        +ILKYL+R R+YM+VY AKDLIL GY +SDFQTDK+ RKST GSVFTLN G +VWRSIKQ CIA+STMEA+Y+ A EAAKEAVWLRKF+HD EVVPNMN+
Subjt:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM

Query:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA
         I LYCDNSG VANSKE  SHKRGK+I+ KYHLIR+IVQRGDVIVTKIA
Subjt:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA

A0A5A7TZD0 Gag/pol protein

7.9e-58

77.18

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Query:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM
        ++LKYL+R R+YM+VY AKDLIL GY +SDFQTDK+ RKST GSVFTLN G +VWRSIKQ CIA+STMEA+Y+ A EAAKEAVWLRKF+HD EVVPNMN+
Subjt:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM

Query:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA
         I LYCDNSG VANSKE  SHKRGK+I+ KYHLIR+IVQRGDVIVTKIA
Subjt:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA

A0A5A7V1F5 Gag/pol protein

3.6e-58

77.85

Show/hide

Query:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM
        +ILKYL+R R+YM+VY AKDLIL GY +SDFQTDK+ RKST GSVFTLN G +VWRSIKQ CIA+STMEA+Y+ A EAAKEAVWLRKF+HD EVVPNMN+
Subjt:  MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNM

Query:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA
         I LYCDNSG VANSKE  SHKRGK+I+ KYHLIR+IVQRGDVIVTKIA
Subjt:  SIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

4.0e-14

31.13

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Query:  ILKYLKRVREYMIVYE---AKDLILIGYINSDFQTDKEFRKSTFGSVFTL-NRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPN
        +L+YLK   +  ++++   A +  +IGY++SD+   +  RKST G +F + +  ++ W + +Q  +A S+ EA+Y+   EA +EA+WL+  +    +   
Subjt:  ILKYLKRVREYMIVYE---AKDLILIGYINSDFQTDKEFRKSTFGSVFTL-NRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPN

Query:  MNMSIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKI
        +   I +Y DN G ++ +     HKR K+I IKYH  R+ VQ   + +  I
Subjt:  MNMSIILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKI

P0CV72 Secreted RxLR effector protein 161

7.8e-10

41.18

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Query:  ILKYLKRVREYMIVY-EAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWL
        +L+YL+  + Y + +  A    L+GY ++D+  D E R+ST G +F LN G + WRS KQ  +A S+ E +Y+   EA +EAVWL
Subjt:  ILKYLKRVREYMIVY-EAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.6e-21

36.49

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Query:  ILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNMS
        IL+YL+      + +   D IL GY ++D   D + RKS+ G +FT + G + W+S  Q+C+A ST EA+YI A E  KE +WL++F+ +  +       
Subjt:  ILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNMS

Query:  IILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA
         ++YCD+   +  SK S+ H R K+I ++YH IR++V    + V KI+
Subjt:  IILYCDNSGTVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATTCTCAAGTATCTTAAGAGAGTGAGAGAGTACATGATTGTGTATGAAGCTAAGGATTTGATCCTTATAGGATACATTAACTCTGATTTCCAAACCGATAAGGAGTT
TAGGAAATCCACGTTTGGATCAGTATTCACCCTGAACAGAGGAGTTATGGTATGGCGTAGCATCAAGCAAGAATGCATTGCAAACTCTACCATGGAGGCTAAATACATCG
TTGCTCGTGAAGCAGCAAAAGAAGCAGTTTGGCTCAGGAAGTTCATGCATGATTTTGAAGTTGTTCCAAACATGAACATGTCCATCATTTTATATTGTGATAACAGTGGG
ACAGTAGCAAATTCTAAAGAATCTCTTAGCCATAAACGAGGGAAATACATAAAGATAAAGTATCATCTGATACGAAAGATTGTGCAACGAGGGGATGTGATTGTAACCAA
GATCGCTTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MILKYLKRVREYMIVYEAKDLILIGYINSDFQTDKEFRKSTFGSVFTLNRGVMVWRSIKQECIANSTMEAKYIVAREAAKEAVWLRKFMHDFEVVPNMNMSIILYCDNSG
TVANSKESLSHKRGKYIKIKYHLIRKIVQRGDVIVTKIA

Cmc12g0325091 (gene) of Melon (Charmono) v1.1 genome