| GenBank top hits | e value | %identity | Alignment |
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| ABO36622.1 copia LTR rider [Solanum lycopersicum] | 5.6e-57 | 66.47 | Show/hide |
Query: VKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQSPRCWY
VK+KAR+VA+GF Q++GVDYNEIFSPVV+H SIR+LLAIVA +NLELEQLDV AFLHG LEEEI+M QP GF+V GK+ VCKLK+SLYGLKQSPR WY
Subjt: VKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQSPRCWY
Query: KRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
KRFD Y+ +G+ RS YD CVYY +L + +IYL+LYVDDML+A K ++++K L EF+MKDL
Subjt: KRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
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| KAA0047818.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 3.7e-69 | 77.59 | Show/hide |
Query: IGDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLK
+G+ N+KVKFK RLVAKGFKQK+G DY EIFSPVV SIR+LL IV CE+L+LEQ+DVTIAFLHGSLEE+++MEQPKGFE KGK +LVCKLK+SLYGLK
Subjt: IGDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLK
Query: QSPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
QSPRCW KRFDD+I+ IGF RSLYDPCVYYKKLT G IYLLLYVDDMLLAGK TKL EIK QL EF+MKDL
Subjt: QSPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
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| KAA0054988.1 hypothetical protein E6C27_scaffold43052G001360 [Cucumis melo var. makuwa] | 3.6e-64 | 77.14 | Show/hide |
Query: MIGDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGL
MI DLNDKVK KARLVAKGFKQK+GVDYNEIFSPVVKH IRILL IVACENL+LEQLDVT AFLHGSLEEEIFMEQPKGFEVKGKKELVCKL
Subjt: MIGDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGL
Query: KQSPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
NRSLYDPCVYYKKLTEGDYIY+LLYVDDMLLAG+ PTKLKEIKAQL EFDMKDL
Subjt: KQSPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
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| MUG03575.1 hypothetical protein [Bacillus tequilensis] | 5.6e-57 | 66.47 | Show/hide |
Query: VKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQSPRCWY
VK+KAR+VA+GF Q++GVDYNEIFSPVV+H SIR+LLAIVA +NLELEQLDV AFLHG LEEEI+M QP GF+V GK+ VCKLK+SLYGLKQSPR WY
Subjt: VKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQSPRCWY
Query: KRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
KRFD Y+ +G+ RS YD CVYY +L + +IYL+LYVDDML+A K ++++K L EF+MKDL
Subjt: KRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
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| TYK02789.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 3.2e-68 | 75.86 | Show/hide |
Query: IGDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLK
+G+ N+KVKFK RLVAKGFKQK+GV Y + FSPVVKH SIR+LL+IVACE+LELEQ+DVT FLHGSLEE+++MEQ KGFE KGK +LVCKLK+SLYGLK
Subjt: IGDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLK
Query: QSPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
QSPRCWYKRFD +I+ IGF RSLYDP VYYKKLT+G IYLLLYVD+MLLAGK TKL EIK QL EF+MKDL
Subjt: QSPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A445B365 Uncharacterized protein | 3.5e-57 | 67.06 | Show/hide |
Query: NDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQSPR
+D +FKARLVAKGF QK+GVDYNEIFSPVVKH SIR+LL++VA NLELEQLDV AFLHG LEEEI+M QP+GF+V+GK+ VC+L++SLYGLKQSPR
Subjt: NDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQSPR
Query: CWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
WYKRFD ++ F+RS YD CVY +KL GDYIYLLLYVDDML+A K ++ +K QL EF+ KDL
Subjt: CWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
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| A0A5A7TXZ9 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.8e-69 | 77.59 | Show/hide |
Query: IGDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLK
+G+ N+KVKFK RLVAKGFKQK+G DY EIFSPVV SIR+LL IV CE+L+LEQ+DVTIAFLHGSLEE+++MEQPKGFE KGK +LVCKLK+SLYGLK
Subjt: IGDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLK
Query: QSPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
QSPRCW KRFDD+I+ IGF RSLYDPCVYYKKLT G IYLLLYVDDMLLAGK TKL EIK QL EF+MKDL
Subjt: QSPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
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| A0A5A7UJ23 Integrase catalytic domain-containing protein | 1.8e-64 | 77.14 | Show/hide |
Query: MIGDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGL
MI DLNDKVK KARLVAKGFKQK+GVDYNEIFSPVVKH IRILL IVACENL+LEQLDVT AFLHGSLEEEIFMEQPKGFEVKGKKELVCKL
Subjt: MIGDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGL
Query: KQSPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
NRSLYDPCVYYKKLTEGDYIY+LLYVDDMLLAG+ PTKLKEIKAQL EFDMKDL
Subjt: KQSPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
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| A0A5D3BXB7 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.5e-68 | 75.86 | Show/hide |
Query: IGDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLK
+G+ N+KVKFK RLVAKGFKQK+GV Y + FSPVVKH SIR+LL+IVACE+LELEQ+DVT FLHGSLEE+++MEQ KGFE KGK +LVCKLK+SLYGLK
Subjt: IGDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLK
Query: QSPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
QSPRCWYKRFD +I+ IGF RSLYDP VYYKKLT+G IYLLLYVD+MLLAGK TKL EIK QL EF+MKDL
Subjt: QSPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
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| B1N668 Copia LTR rider | 2.7e-57 | 66.47 | Show/hide |
Query: VKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQSPRCWY
VK+KAR+VA+GF Q++GVDYNEIFSPVV+H SIR+LLAIVA +NLELEQLDV AFLHG LEEEI+M QP GF+V GK+ VCKLK+SLYGLKQSPR WY
Subjt: VKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQSPRCWY
Query: KRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
KRFD Y+ +G+ RS YD CVYY +L + +IYL+LYVDDML+A K ++++K L EF+MKDL
Subjt: KRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 1.1e-31 | 41.62 | Show/hide |
Query: DLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQS
+L + +++KARLVA+GF QK +DY E F+PV + S R +L++V NL++ Q+DV AFL+G+L+EEI+M P+G + + VCKL +++YGLKQ+
Subjt: DLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQS
Query: PRCWYKRFDDYISLIGFNRSLYDPCVY-YKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
RCW++ F+ + F S D C+Y K + IY+LLYVDD+++A T++ K L +F M DL
Subjt: PRCWYKRFDDYISLIGFNRSLYDPCVY-YKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
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| P0C2J7 Transposon Ty4-H Gag-Pol polyprotein | 1.0e-16 | 33.74 | Show/hide |
Query: FKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQSPRCWYKR
+KAR+V +G Q Y+ I + + H I+I L I N+ ++ LD+ AFL+ LEEEI++ P + V KL ++LYGLKQSP+ W
Subjt: FKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQSPRCWYKR
Query: FDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMK
Y++ IG + Y P +Y TE + + +YVDD ++A +L E +L F++K
Subjt: FDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMK
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 6.7e-53 | 59.28 | Show/hide |
Query: VKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQSPRCWY
V++KARLV KGF+QKKG+D++EIFSPVVK SIR +L++ A +LE+EQLDV AFLHG LEEEI+MEQP+GFEV GKK +VCKL +SLYGLKQ+PR WY
Subjt: VKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQSPRCWY
Query: KRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
+FD ++ + ++ DPCVY+K+ +E ++I LLLYVDDML+ GK + ++K L FDMKDL
Subjt: KRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKDL
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.1e-34 | 44.19 | Show/hide |
Query: GDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQ
G LN ++KARLVAKG+ Q+ G+DY E FSPV+K SIRI+L + + + QLDV AFL G+L ++++M QP GF K + VCKL+++LYGLKQ
Subjt: GDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQ
Query: SPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKD
+PR WY +Y+ IGF S+ D ++ + + +Y+L+YVDD+L+ G PT L L F +KD
Subjt: SPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEGDYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKD
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 2.6e-33 | 43.35 | Show/hide |
Query: GDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQ
G LN ++KARLVAKG+ Q+ G+DY E FSPV+K SIRI+L + + + QLDV AFL G+L +E++M QP GF K + + VC+L++++YGLKQ
Subjt: GDLNDKVKFKARLVAKGFKQKKGVDYNEIFSPVVKHISIRILLAIVACENLELEQLDVTIAFLHGSLEEEIFMEQPKGFEVKGKKELVCKLKRSLYGLKQ
Query: SPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEG-DYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKD
+PR WY Y+ +GF S+ D ++ L G IY+L+YVDD+L+ G LK L F +K+
Subjt: SPRCWYKRFDDYISLIGFNRSLYDPCVYYKKLTEG-DYIYLLLYVDDMLLAGKYPTKLKEIKAQLDVEFDMKD
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