CuGenDBv2

Gene ID	Cmc12g0326081
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr12:16443145..16443819
RNA-Seq Expression	Cmc12g0326081
Synteny	Cmc12g0326081
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033501.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.8e-109

88.39

Show/hide

Query:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV
        MKTPEERWT    KL NLKPFGCTTYVYIKQS+IEP+ALKCMF+G+PDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPS E+NLNE S SHQV
Subjt:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV

Query:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL
        EIHSNLK+LNPS+SDQLPTEA PSFH QEEEEEENAEDLTNYSL RDRGR TIRPPSRF RADCIANSSTETI+DEPY+YEDALYS+HNNQWKEAMN EL
Subjt:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL

Query:  NSLYKNDTWKLVEKPHGKSIIPCK
        NSLYK DT KLVEKPHGKSIIPCK
Subjt:  NSLYKNDTWKLVEKPHGKSIIPCK

KAA0039651.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]

2.8e-77

88.1

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Query:  DFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQVEIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPP
        DFSKER LISRDV+FKENEIYM+SIKVIPSAE NLNEPS SHQVEIHSNLK+ NPS+SDQLPT+AFPSFH QEEEEEENAEDLTNYSL RDRGR TIRPP
Subjt:  DFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQVEIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPP

Query:  SRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDELNSLYKNDTWKLVEKPHGKSIIPCK
        SRF RADCIANSS ETIEDEPY+Y+DAL S+HNNQWKEAMNDELNSLYKNDTW+LVE PHGKSIIPCK
Subjt:  SRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDELNSLYKNDTWKLVEKPHGKSIIPCK

KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.7e-88

77.23

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Query:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV
        MKTPEERW GA  KL NLKPFGCTTYVYIKQS+IEPRALKCMF+GYPDGVK YKLWDF KERSLISRDVVFKENEIYMESIKVIP AEKNLNEPS SHQV
Subjt:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV

Query:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL
        EIHSNLKNLNPS+SDQLPTEA PSF+SQEEEEEENAEDLTNYSL RDRGR TI+PPSRF RADCI NSS ETIED+P +YEDALY               
Subjt:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL

Query:  NSLYKNDTWKLVEKPHGKSIIPCK
                    +KPHGK IIPCK
Subjt:  NSLYKNDTWKLVEKPHGKSIIPCK

TYK12279.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]

3.7e-77

70.32

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Query:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV
        MKTPEERWTGAI KL NLKPFGCT YVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIP               
Subjt:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV

Query:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL
                                                   L RDRGRGTIRPPSRF RADCIANSSTETIEDEPY+YEDALYSKHNNQWKEAMNDEL
Subjt:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL

Query:  NSLYKNDTWKLVEKPHGKS
        NSLYKNDTWKLVEKPHGK+
Subjt:  NSLYKNDTWKLVEKPHGKS

TYK27723.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.7e-112

91.07

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Query:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV
        MKTPEERWTGA  KL NLKPFGCT YVYIKQS+IEPRALKCMF+GYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIP AEKN NEPS SHQV
Subjt:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV

Query:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL
        EIHSNLKNLNPS+SDQLPTEA PSF+SQEEEEE+NAEDLTNYSL RDRGR TIRPPSRF RADCIANSSTETIEDE  +YEDALYSKHNNQWKEAMNDEL
Subjt:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL

Query:  NSLYKNDTWKLVEKPHGKSIIPCK
        NSLYKNDTW+LVEKPHGKSIIPCK
Subjt:  NSLYKNDTWKLVEKPHGKSIIPCK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SVP7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-109

88.39

Show/hide

Query:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV
        MKTPEERWT    KL NLKPFGCTTYVYIKQS+IEP+ALKCMF+G+PDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPS E+NLNE S SHQV
Subjt:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV

Query:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL
        EIHSNLK+LNPS+SDQLPTEA PSFH QEEEEEENAEDLTNYSL RDRGR TIRPPSRF RADCIANSSTETI+DEPY+YEDALYS+HNNQWKEAMN EL
Subjt:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL

Query:  NSLYKNDTWKLVEKPHGKSIIPCK
        NSLYK DT KLVEKPHGKSIIPCK
Subjt:  NSLYKNDTWKLVEKPHGKSIIPCK

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-88

77.23

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Query:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV
        MKTPEERW GA  KL NLKPFGCTTYVYIKQS+IEPRALKCMF+GYPDGVK YKLWDF KERSLISRDVVFKENEIYMESIKVIP AEKNLNEPS SHQV
Subjt:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV

Query:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL
        EIHSNLKNLNPS+SDQLPTEA PSF+SQEEEEEENAEDLTNYSL RDRGR TI+PPSRF RADCI NSS ETIED+P +YEDALY               
Subjt:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL

Query:  NSLYKNDTWKLVEKPHGKSIIPCK
                    +KPHGK IIPCK
Subjt:  NSLYKNDTWKLVEKPHGKSIIPCK

A0A5D3BAM8 Retrotransposon protein, putative, Ty1-copia subclass

1.4e-77

88.1

Show/hide

Query:  DFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQVEIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPP
        DFSKER LISRDV+FKENEIYM+SIKVIPSAE NLNEPS SHQVEIHSNLK+ NPS+SDQLPT+AFPSFH QEEEEEENAEDLTNYSL RDRGR TIRPP
Subjt:  DFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQVEIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPP

Query:  SRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDELNSLYKNDTWKLVEKPHGKSIIPCK
        SRF RADCIANSS ETIEDEPY+Y+DAL S+HNNQWKEAMNDELNSLYKNDTW+LVE PHGKSIIPCK
Subjt:  SRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDELNSLYKNDTWKLVEKPHGKSIIPCK

A0A5D3CPM8 Pentatricopeptide repeat-containing protein

1.8e-77

70.32

Show/hide

Query:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV
        MKTPEERWTGAI KL NLKPFGCT YVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIP               
Subjt:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV

Query:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL
                                                   L RDRGRGTIRPPSRF RADCIANSSTETIEDEPY+YEDALYSKHNNQWKEAMNDEL
Subjt:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL

Query:  NSLYKNDTWKLVEKPHGKS
        NSLYKNDTWKLVEKPHGK+
Subjt:  NSLYKNDTWKLVEKPHGKS

A0A5D3DVM0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-112

91.07

Show/hide

Query:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV
        MKTPEERWTGA  KL NLKPFGCT YVYIKQS+IEPRALKCMF+GYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIP AEKN NEPS SHQV
Subjt:  MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV

Query:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL
        EIHSNLKNLNPS+SDQLPTEA PSF+SQEEEEE+NAEDLTNYSL RDRGR TIRPPSRF RADCIANSSTETIEDE  +YEDALYSKHNNQWKEAMNDEL
Subjt:  EIHSNLKNLNPSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDEL

Query:  NSLYKNDTWKLVEKPHGKSIIPCK
        NSLYKNDTW+LVEKPHGKSIIPCK
Subjt:  NSLYKNDTWKLVEKPHGKSIIPCK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

3.1e-10

24.67

Show/hide

Query:  KTPEERWTGAILKLFNLKPFGCTTYVYI--KQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENE------IYMESIKVIPSAE-KNLN
        KTP E W      L +L+ FG T YV+I  KQ + + ++ K +FVGY     G+KLWD   E+ +++RDVV  E        +  E++ +  S E +N N
Subjt:  KTPEERWTGAILKLFNLKPFGCTTYVYI--KQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENE------IYMESIKVIPSAE-KNLN

Query:  EPSISH---QVEIHSNLKNLN----------------PSNSDQLPTEAFP----------------------------------------SFHSQEEEEE
         P+ S    Q E  +  K  +                P++S ++    FP                                        S +  E  E 
Subjt:  EPSISH---QVEIHSNLKNLN----------------PSNSDQLPTEAFP----------------------------------------SFHSQEEEEE

Query:  ENAEDLTNYS------------LIRDRGRGTIRPPSRFVRADCIANS---STETI-EDEPYNYEDALYSKHNNQWKEAMNDELNSLYKNDTWKLVEKPHG
        E AE L                + R   R   +P   +   D   N    +  TI  D P ++++  Y    + W+EA+N ELN+   N+TW + ++P  
Subjt:  ENAEDLTNYS------------LIRDRGRGTIRPPSRFVRADCIANS---STETI-EDEPYNYEDALYSKHNNQWKEAMNDELNSLYKNDTWKLVEKPHG

Query:  KSII
        K+I+
Subjt:  KSII

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.0e-18

29.06

Show/hide

Query:  PEERWTGAILKLFNLKPFGCTTYVYIKQSQ---IEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV
        PE  WT   +   +LK FGC  + ++ + Q   ++ +++ C+F+GY D   GY+LWD  K++ + SRDVVF+E+E     ++      + +    I + V
Subjt:  PEERWTGAILKLFNLKPFGCTTYVYIKQSQ---IEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQV

Query:  EIHSNLKNLNPSNSDQLPTEAFPSFH------SQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETI----EDEPYNYEDALYSKHNN
         I S   + NP++++    E             Q E+ +E  E++ + +   ++ +   R  S   R +     STE +    + EP + ++ L     N
Subjt:  EIHSNLKNLNPSNSDQLPTEAFPSFH------SQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETI----EDEPYNYEDALYSKHNN

Query:  QWKEAMNDELNSLYKNDTWKLVEKPHGKSIIPCK
        Q  +AM +E+ SL KN T+KLVE P GK  + CK
Subjt:  QWKEAMNDELNSLYKNDTWKLVEKPHGKSIIPCK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGACTCCTGAAGAAAGATGGACTGGAGCTATCCTTAAGCTCTTTAATCTAAAACCTTTTGGGTGTACAACATATGTCTACATCAAACAAAGCCAGATTGAACCTAG
AGCTCTTAAATGTATGTTTGTTGGCTACCCTGATGGTGTCAAAGGCTACAAGCTCTGGGATTTCTCCAAAGAAAGAAGCCTAATAAGCAGAGATGTTGTTTTCAAGGAGA
ATGAAATCTATATGGAGTCTATCAAAGTAATACCGTCTGCTGAAAAGAATTTGAATGAACCTTCTATCAGCCACCAAGTAGAGATTCATTCAAATTTGAAAAACTTAAAC
CCTAGCAACAGTGATCAACTTCCAACAGAAGCTTTTCCTAGCTTTCATTCCCAGGAAGAAGAGGAAGAAGAAAATGCAGAAGATTTGACAAATTATAGCTTAATAAGAGA
TAGAGGGAGAGGAACCATTAGACCTCCTTCTAGATTTGTAAGAGCAGATTGCATAGCTAACTCCTCTACAGAGACTATAGAAGATGAGCCTTACAATTATGAAGATGCTC
TATACAGTAAACACAACAATCAGTGGAAAGAAGCCATGAATGATGAACTTAATTCACTCTACAAGAATGATACTTGGAAATTAGTAGAAAAGCCACATGGAAAAAGTATA
ATTCCTTGTAAATAG

mRNA sequence

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Protein sequence

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MKTPEERWTGAILKLFNLKPFGCTTYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIYMESIKVIPSAEKNLNEPSISHQVEIHSNLKNLN
PSNSDQLPTEAFPSFHSQEEEEEENAEDLTNYSLIRDRGRGTIRPPSRFVRADCIANSSTETIEDEPYNYEDALYSKHNNQWKEAMNDELNSLYKNDTWKLVEKPHGKSI
IPCK

Cmc12g0326081 (gene) of Melon (Charmono) v1.1 genome