CuGenDBv2

Gene ID	Cmc12g0327331
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	primase homolog protein isoform X2
Genome location	CMiso1.1chr12:18152162..18158624
RNA-Seq Expression	Cmc12g0327331
Synteny	Cmc12g0327331
Gene Ontology terms	GO:0003697 - single-stranded DNA binding (molecular function) GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domains	IPR006171 - TOPRIM domain IPR027032 - Twinkle-like protein IPR034154 - Archaeal primase DnaG/twinkle, TOPRIM domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008445790.1 PREDICTED: primase homolog protein isoform X2 [Cucumis melo]

7.0e-186

99.37

Show/hide

Query:  QVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD
        +VLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD
Subjt:  QVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD

Query:  ELISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPG
        ELISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPG
Subjt:  ELISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPG

Query:  GAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKF
        GAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKF
Subjt:  GAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKF

Query:  YQLSISISIQK-EGLFQEH
        YQLSISISIQK EGLFQEH
Subjt:  YQLSISISIQK-EGLFQEH

XP_011659247.1 primase homolog protein isoform X1 [Cucumis sativus]

1.2e-172

91.8

Show/hide

Query:  LREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEL
        L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDEL
Subjt:  LREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEL

Query:  ISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGA
        ISYFSMRMISQETLERNVVMQ+ GRQV IAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGA
Subjt:  ISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGA

Query:  PSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQ
        P+KVSTDT+PPIEKD+AYQYLW CKDYLDKVSR+ILATDSDVPGQALAEELARRLGK+RCWRV WPYKDGFNRFKDANEVLVHLGPDALK AI+DAKFYQ
Subjt:  PSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQ

Query:  LSISISIQK-EGLFQEH
        LS S  IQK E LFQEH
Subjt:  LSISISIQK-EGLFQEH

XP_016899150.1 PREDICTED: primase homolog protein isoform X1 [Cucumis melo]

1.7e-184

99.06

Show/hide

Query:  QVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD
        +VLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD
Subjt:  QVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD

Query:  ELISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVP
        ELISYFSMRMISQETLERNVVMQVVGR QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVP
Subjt:  ELISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVP

Query:  GGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAK
        GGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAK
Subjt:  GGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAK

Query:  FYQLSISISIQK-EGLFQEH
        FYQLSISISIQK EGLFQEH
Subjt:  FYQLSISISIQK-EGLFQEH

XP_016899151.1 PREDICTED: primase homolog protein isoform X3 [Cucumis melo]

7.0e-170

94.06

Show/hide

Query:  QVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD
        +VLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD
Subjt:  QVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD

Query:  ELISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVP
        ELISYFSMRMISQETLERNVVMQVVGR QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVP
Subjt:  ELISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVP

Query:  GGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAK
        GGAPSKVSTDTIPPIE                KVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAK
Subjt:  GGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAK

Query:  FYQLSISISIQK-EGLFQEH
        FYQLSISISIQK EGLFQEH
Subjt:  FYQLSISISIQK-EGLFQEH

XP_016899155.1 PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial isoform X5 [Cucumis melo]

1.8e-189

99.39

Show/hide

Query:  MLHRCRRQVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESL
        MLHRCRRQVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESL
Subjt:  MLHRCRRQVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESL

Query:  VLEPLCDELISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGF
        VLEPLCDELISYFSMRMISQETLERNVVMQVVGR QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGF
Subjt:  VLEPLCDELISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGF

Query:  LNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALK
        LNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALK
Subjt:  LNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALK

Query:  NAIQDAKFYQLSISISIQK-EGLFQEH
        NAIQDAKFYQLSISISIQK EGLFQEH
Subjt:  NAIQDAKFYQLSISISIQK-EGLFQEH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LYN4 Toprim domain-containing protein

5.6e-173

91.8

Show/hide

Query:  LREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEL
        L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDEL
Subjt:  LREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEL

Query:  ISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGA
        ISYFSMRMISQETLERNVVMQ+ GRQV IAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGA
Subjt:  ISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGA

Query:  PSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQ
        P+KVSTDT+PPIEKD+AYQYLW CKDYLDKVSR+ILATDSDVPGQALAEELARRLGK+RCWRV WPYKDGFNRFKDANEVLVHLGPDALK AI+DAKFYQ
Subjt:  PSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQ

Query:  LSISISIQK-EGLFQEH
        LS S  IQK E LFQEH
Subjt:  LSISISIQK-EGLFQEH

A0A1S3BDI8 primase homolog protein isoform X2

3.4e-186

99.37

Show/hide

Query:  QVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD
        +VLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD
Subjt:  QVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD

Query:  ELISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPG
        ELISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPG
Subjt:  ELISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPG

Query:  GAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKF
        GAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKF
Subjt:  GAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKF

Query:  YQLSISISIQK-EGLFQEH
        YQLSISISIQK EGLFQEH
Subjt:  YQLSISISIQK-EGLFQEH

A0A1S4DT34 primase homolog protein isoform X3

3.4e-170

94.06

Show/hide

Query:  QVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD
        +VLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD
Subjt:  QVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD

Query:  ELISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVP
        ELISYFSMRMISQETLERNVVMQVVGR QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVP
Subjt:  ELISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVP

Query:  GGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAK
        GGAPSKVSTDTIPPIE                KVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAK
Subjt:  GGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAK

Query:  FYQLSISISIQK-EGLFQEH
        FYQLSISISIQK EGLFQEH
Subjt:  FYQLSISISIQK-EGLFQEH

A0A1S4DTX2 primase homolog protein isoform X1

8.3e-185

99.06

Show/hide

Query:  QVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD
        +VLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD
Subjt:  QVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCD

Query:  ELISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVP
        ELISYFSMRMISQETLERNVVMQVVGR QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVP
Subjt:  ELISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVP

Query:  GGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAK
        GGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAK
Subjt:  GGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAK

Query:  FYQLSISISIQK-EGLFQEH
        FYQLSISISIQK EGLFQEH
Subjt:  FYQLSISISIQK-EGLFQEH

A0A1S4DTX6 twinkle homolog protein, chloroplastic/mitochondrial isoform X5

8.6e-190

99.39

Show/hide

Query:  MLHRCRRQVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESL
        MLHRCRRQVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESL
Subjt:  MLHRCRRQVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESL

Query:  VLEPLCDELISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGF
        VLEPLCDELISYFSMRMISQETLERNVVMQVVGR QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGF
Subjt:  VLEPLCDELISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGF

Query:  LNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALK
        LNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALK
Subjt:  LNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALK

Query:  NAIQDAKFYQLSISISIQK-EGLFQEH
        NAIQDAKFYQLSISISIQK EGLFQEH
Subjt:  NAIQDAKFYQLSISISIQK-EGLFQEH

SwissProt top hits

e value

%identity

Alignment

B5X582 Twinkle homolog protein, chloroplastic/mitochondrial

7.9e-92

54.58

Show/hide

Query:  RRQVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPL
        R   LR K+   G+   E+C PG++  L CP C+GG   E+SLSL + P G  A W CFR +CG  G + ADG LA       EK+  + + E + LEPL
Subjt:  RRQVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPL

Query:  CDELISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCIS
        CDE+  YF+ R IS++TLERN VMQ  +G ++ IAFTY Q G+LV CKYR++ K F+QE+ T + LYG+DDI    E+IIVEGE+DKL++EEAGFLNC+S
Subjt:  CDELISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCIS

Query:  VPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQD
        VP GAP+KVS+  IP  +KD+ Y++LW C DYL K SRI++ATD D PGQA+AEE+ARRLGK RCWRV WP K     FKDANEVL+  GP  LK AI D
Subjt:  VPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQD

Query:  AKFYQL
        A+ Y +
Subjt:  AKFYQL

F4I6E6 Primase homolog protein

4.2e-85

54.14

Show/hide

Query:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRL-AFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQE
        ++C PG   CL CPKC+ G   E+SL+L++ P G  A W C R +CG  G +  DG+L + +   K E+ +   + ES+ LEPLCDE+  +F+ R IS +
Subjt:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRL-AFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQE

Query:  TLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPP
        TLERN VMQ  +  ++ IAFTY Q G+LV CKYR++ K+F QE+ T K LYG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP GAP  VS+  IP 
Subjt:  TLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPP

Query:  IEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
          KD+A++Y+W C DYL K SRI++ATD D PGQALAEELARRLGK RCW V WP K     FKDANEVL+  GP  LK AI +A+ Y L
Subjt:  IEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL

Arabidopsis top hits

e value

%identity

Alignment

AT1G30660.1 nucleic acid binding;nucleic acid binding

3.0e-86

54.14

Show/hide

Query:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRL-AFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQE
        ++C PG   CL CPKC+ G   E+SL+L++ P G  A W C R +CG  G +  DG+L + +   K E+ +   + ES+ LEPLCDE+  +F+ R IS +
Subjt:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRL-AFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQE

Query:  TLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPP
        TLERN VMQ  +  ++ IAFTY Q G+LV CKYR++ K+F QE+ T K LYG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP GAP  VS+  IP 
Subjt:  TLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPP

Query:  IEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL
          KD+A++Y+W C DYL K SRI++ATD D PGQALAEELARRLGK RCW V WP K     FKDANEVL+  GP  LK AI +A+ Y L
Subjt:  IEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQL

AT1G30680.1 toprim domain-containing protein

5.6e-93

54.58

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Query:  RRQVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPL
        R   LR K+   G+   E+C PG++  L CP C+GG   E+SLSL + P G  A W CFR +CG  G + ADG LA       EK+  + + E + LEPL
Subjt:  RRQVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPL

Query:  CDELISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCIS
        CDE+  YF+ R IS++TLERN VMQ  +G ++ IAFTY Q G+LV CKYR++ K F+QE+ T + LYG+DDI    E+IIVEGE+DKL++EEAGFLNC+S
Subjt:  CDELISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCIS

Query:  VPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQD
        VP GAP+KVS+  IP  +KD+ Y++LW C DYL K SRI++ATD D PGQA+AEE+ARRLGK RCWRV WP K     FKDANEVL+  GP  LK AI D
Subjt:  VPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQD

Query:  AKFYQL
        A+ Y +
Subjt:  AKFYQL

Sequences

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CDS sequence

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ATGCTCCACCGTTGCCGCCGCCAGGTTCTTAGGGAGAAGATGGATCTTATTGGAATCGTTTGTGATGAACATTGTATCCCTGGAAAGTACTATTGCCTCTTCTGTCCCAA
GTGCAAGGGTGGTCGTTTAATGGAGAGGAGCTTATCTCTTCATGTGATTCCAACTGGAGATTTTGCAATGTGGAGGTGTTTCCGGTTTGAGTGTGGTTGGGCAGGCCGGA
TATTTGCAGATGGCAGATTGGCATTTAATGGATTCAGCAAAACTGAAAAAATGGTTGGACGGAGTTCAAAGGAAAGTTTGGTTTTGGAGCCTCTTTGTGATGAGCTAATC
TCTTATTTCAGCATGAGAATGATATCCCAAGAAACCTTAGAACGGAATGTTGTTATGCAAGTAGTTGGTCGTCAGGTTGCTATTGCATTTACTTATCGTCAAAATGGACA
GCTTGTCGGTTGCAAGTATCGAACCATGGACAAGAGATTTTGGCAGGAGAAGGGTACAGCAAAGTTCCTGTATGGGATTGATGACATTAATGATGCAGATGAACTCATCA
TTGTTGAAGGTGAAATGGATAAACTTTCAGTTGAAGAAGCTGGTTTCCTGAATTGTATCAGTGTTCCTGGTGGTGCCCCAAGCAAGGTTTCAACTGATACAATTCCACCA
ATTGAAAAGGATTCTGCATACCAATATTTATGGGGCTGCAAAGACTACTTAGATAAGGTTTCCCGCATTATCTTGGCCACTGATAGCGATGTACCAGGGCAAGCTTTGGC
AGAAGAGCTAGCACGTCGTCTTGGAAAACACAGATGTTGGCGAGTAGATTGGCCATATAAAGATGGCTTCAACCGTTTTAAGGATGCCAATGAGGTTCTTGTCCACTTGG
GACCAGATGCTTTGAAGAACGCAATTCAAGATGCCAAGTTTTATCAACTTTCAATTTCAATTTCAATACAAAAAGAGGGCCTGTTCCAAGAGCATTGA

mRNA sequence

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AGAAAACCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGCAGATAAGGCCTCTTCCACTCTGCTCTTCCATTTCTCTCCAAATCCATTCAATTCAAATGCCAATAAACT
CAACTTTCACCTTCAATTCCAATTTCAACTTCAACTTCAAATTCATTCATCGCTCTTCCCCTTCCTCTCTTTCTCTAAACAATTTCTCCATTTCCTCTTCCCCTTCCCGA
TTCCTTCTTCGCTTCTGCACTACCAGACTATCTTCCGCCCTTTCTCATGCTCCACCGTTGCCGCCGCCAGGTTCTTAGGGAGAAGATGGATCTTATTGGAATCGTTTGTG
ATGAACATTGTATCCCTGGAAAGTACTATTGCCTCTTCTGTCCCAAGTGCAAGGGTGGTCGTTTAATGGAGAGGAGCTTATCTCTTCATGTGATTCCAACTGGAGATTTT
GCAATGTGGAGGTGTTTCCGGTTTGAGTGTGGTTGGGCAGGCCGGATATTTGCAGATGGCAGATTGGCATTTAATGGATTCAGCAAAACTGAAAAAATGGTTGGACGGAG
TTCAAAGGAAAGTTTGGTTTTGGAGCCTCTTTGTGATGAGCTAATCTCTTATTTCAGCATGAGAATGATATCCCAAGAAACCTTAGAACGGAATGTTGTTATGCAAGTAG
TTGGTCGTCAGGTTGCTATTGCATTTACTTATCGTCAAAATGGACAGCTTGTCGGTTGCAAGTATCGAACCATGGACAAGAGATTTTGGCAGGAGAAGGGTACAGCAAAG
TTCCTGTATGGGATTGATGACATTAATGATGCAGATGAACTCATCATTGTTGAAGGTGAAATGGATAAACTTTCAGTTGAAGAAGCTGGTTTCCTGAATTGTATCAGTGT
TCCTGGTGGTGCCCCAAGCAAGGTTTCAACTGATACAATTCCACCAATTGAAAAGGATTCTGCATACCAATATTTATGGGGCTGCAAAGACTACTTAGATAAGGTTTCCC
GCATTATCTTGGCCACTGATAGCGATGTACCAGGGCAAGCTTTGGCAGAAGAGCTAGCACGTCGTCTTGGAAAACACAGATGTTGGCGAGTAGATTGGCCATATAAAGAT
GGCTTCAACCGTTTTAAGGATGCCAATGAGGTTCTTGTCCACTTGGGACCAGATGCTTTGAAGAACGCAATTCAAGATGCCAAGTTTTATCAACTTTCAATTTCAATTTC
AATACAAAAAGAGGGCCTGTTCCAAGAGCATTGACAATTCTGGTAAACAAGATCGAGTAGAGTAATCCATAATACTTAGGTTTAGTAGTTGCAGTAGCTAGAGAGATCAT
GTATGTTCTTTGATACATAAGAAGCCTTGGATTATATATTAAGAAAAAAGGGAAGAGAAAAAACATACTTTTAAAGTTTGATTTGATTGAAACTTTTCTTTTCTTTTCTT
TTACAACTTTTTCCTCAAAGGAATTTCTTT

Protein sequence

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MLHRCRRQVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELI
SYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPP
IEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEVLVHLGPDALKNAIQDAKFYQLSISISIQKEGLFQEH

Cmc12g0327331 (gene) of Melon (Charmono) v1.1 genome