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Cmc12g0331111 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0331111
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionprotein LOL2
Genome locationCMiso1.1chr12:21931231..21934233
RNA-Seq ExpressionCmc12g0331111
SyntenyCmc12g0331111
Gene Ontology termsGO:0009617 - response to bacterium (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146601.1 protein LOL2 isoform X2 [Cucumis sativus]4.0e-6896.95Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPP PQLS DMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        CTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_008442535.1 PREDICTED: protein LOL2 isoform X3 [Cucumis melo]1.9e-7099.24Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP-DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP-DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_008442544.1 PREDICTED: protein LOL2 isoform X4 [Cucumis melo]7.9e-72100Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_011653178.1 protein LOL2 isoform X1 [Cucumis sativus]1.0e-6696.21Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQL-SPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPP PQL S DMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQL-SPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        SCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_022927005.1 protein LOL2 [Cucurbita moschata]2.3e-6390.84Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        M++HEIEKDEDDGPPPGWEPITP LP PP   LS DMAQMVCGTCRRLLKYLKGARYVQCS CSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        CT VTEIGVHNRRPPWSVQQGQAAPPTN VQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

TrEMBL top hitse value%identityAlignment
A0A0A0LXE3 Uncharacterized protein2.0e-6896.95Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPP PQLS DMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        CTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A1S3B6K2 protein LOL2 isoform X39.4e-7199.24Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP-DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP-DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A1S3B6Q2 protein LOL2 isoform X43.8e-72100Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A5A7UQS3 Protein LOL2 isoform X43.8e-72100Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A5D3DST5 Protein LOL2 isoform X39.4e-7199.24Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP-DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP-DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

SwissProt top hitse value%identityAlignment
O65426 Protein LOL21.6e-3557.14Show/hide
Query:  EIEKDEDDGPPPGWEP-------ITPSLPLPPQPQL--SPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS
        E E++E++GPPPGWE        +T +  + P P     P+ AQMVCG+CRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +
Subjt:  EIEKDEDDGPPPGWEP-------ITPSLPLPPQPQL--SPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS

Query:  VRCSSCTSVTEIGVHNRRPPWSVQQG
        VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  VRCSSCTSVTEIGVHNRRPPWSVQQG

P94077 Protein LSD15.2e-1842.11Show/hide
Query:  LPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP
        +P PP P    DMA ++CG CR +L Y +GA  V+CS C T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P
Subjt:  LPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP

Query:  WSVQQ--GQAAPPT
            +  G A PP+
Subjt:  WSVQQ--GQAAPPT

Q0J7V9 Protein LSD14.7e-1953.85Show/hide
Query:  PQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        P    +MAQ+VCG C  LL Y++GA  VQCS C TVN  +EA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

Q704V3 Protein LOL51.2e-2755.24Show/hide
Query:  PGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP
        P  +   P +P PP P L+ ++ QMVCG+CR LL Y +GA YV C+ C T+N+VLEAHEVG+V CG CA LLMYP+GA +V+CS C  VTEIG  N R  
Subjt:  PGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP

Query:  WSVQQ
         S++Q
Subjt:  WSVQQ

Q93ZB1 Protein LOL12.8e-1955.13Show/hide
Query:  PQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        P    +MAQ+VCG C  LL Y++GA  VQCS C TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 12.0e-2055.13Show/hide
Query:  PQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        P    +MAQ+VCG C  LL Y++GA  VQCS C TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT1G32540.2 lsd one like 12.0e-2055.13Show/hide
Query:  PQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        P    +MAQ+VCG C  LL Y++GA  VQCS C TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT1G32540.3 lsd one like 12.0e-2055.13Show/hide
Query:  PQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        P    +MAQ+VCG C  LL Y++GA  VQCS C TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT4G20380.2 LSD1 zinc finger family protein3.7e-1942.11Show/hide
Query:  LPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP
        +P PP P    DMA ++CG CR +L Y +GA  V+CS C T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P
Subjt:  LPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP

Query:  WSVQQ--GQAAPPT
            +  G A PP+
Subjt:  WSVQQ--GQAAPPT

AT4G21610.1 lsd one like 21.1e-3657.14Show/hide
Query:  EIEKDEDDGPPPGWEP-------ITPSLPLPPQPQL--SPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS
        E E++E++GPPPGWE        +T +  + P P     P+ AQMVCG+CRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +
Subjt:  EIEKDEDDGPPPGWEP-------ITPSLPLPPQPQL--SPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS

Query:  VRCSSCTSVTEIGVHNRRPPWSVQQG
        VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  VRCSSCTSVTEIGVHNRRPPWSVQQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTCCATGAAATCGAGAAAGACGAAGATGACGGCCCTCCTCCTGGATGGGAACCCATCACTCCATCCTTGCCTCTACCGCCGCAGCCGCAACTTTCTCCT
GACATGGCACAAATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGGTGTTCAACAGTTAACTTTGTGTTA
GAAGCTCACGAGGTTGGACAAGTTAAATGCGGTTCTTGTGCGGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGATGTTCTTCGTGTACCAGTGTGACA
GAAATTGGGGTTCATAATAGACGGCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACCAACTTTGTTCAATAG
mRNA sequenceShow/hide mRNA sequence
GGGGAGAATTGAGAAGTTAGGGAGCCAAAGCGCGGGACGCCGTTGTCCATGGAAACAACAACATGACCGATTCTTAAGGCGACAGATCGAGAGAATGGATGTCCA
TGAAATCGAGAAAGACGAAGATGACGGCCCTCCTCCTGGATGGGAACCCATCACTCCATCCTTGCCTCTACCGCCGCAGCCGCAACTTTCTCCTGACATGGCACA
AATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGGTGTTCAACAGTTAACTTTGTGTTAGAAGCTCACGA
GGTTGGACAAGTTAAATGCGGTTCTTGTGCGGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGATGTTCTTCGTGTACCAGTGTGACAGAAATTGGGGT
TCATAATAGACGGCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACCAACTTTGTTCAATAGATTTTGTTTTTCTGAGTTTCATTTAGGAAAAGATG
TTCCATTTTCTGAGTTTTTCTTTTCCGTTGCAGCCTTAATCAGCAGGCAGAGAAAGAAAAGAGAAAACTATCAATCATTAGTGCCACTTTTATTTCCTTATTATT
AGCTATTGAGTTTATGTAAAGAAACTTAGGAACTCACCTTCTTAACTTCCAACATTTTTTTTTTTATCTTAAGTTTTTTGACTTGTGACTTGACTTGTTGCTTTG
TGTTCATTTTTTTAATGCTGCTGATTGGAGCCCTTATTAGTTGCTGCCAATCTCTGGGGTGTACTTAATTGTAATTTGTAAATGGTATGAATCTTTTTTATTGTC
AAATTGTTGAGGTATAATTTATTGAGATGAACCGTCTAAATATATCTATGATCGTTAAGTTTGATGATCCTTG
Protein sequenceShow/hide protein sequence
MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVT
EIGVHNRRPPWSVQQGQAAPPTNFVQ