; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc12g0336801 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0336801
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDown syndrome critical region protein 3-like protein isoform X1
Genome locationCMiso1.1chr12:25169387..25170941
RNA-Seq ExpressionCmc12g0336801
SyntenyCmc12g0336801
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0042147 - retrograde transport, endosome to Golgi (biological process)
GO:0048768 - root hair cell tip growth (biological process)
GO:0005829 - cytosol (cellular component)
GO:0010008 - endosome membrane (cellular component)
GO:0030904 - retromer complex (cellular component)
InterPro domainsIPR014752 - Arrestin-like, C-terminal
IPR028934 - Vacuolar protein sorting protein 26 related


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ99037.1 Down syndrome critical region protein 3-like protein isoform X1 [Cucumis melo var. makuwa]1.1e-6795.77Show/hide
Query:  MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS
        MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIR+ALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS
Subjt:  MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS

Query:  ENLGKFYETFHGTDINIQVTVANLFTLLQTTRMPDGMVFTII
        ENLGKFYETFHGTDINIQVTVANLFTLLQTTRMPDGM    +
Subjt:  ENLGKFYETFHGTDINIQVTVANLFTLLQTTRMPDGMVFTII

XP_004137506.1 vacuolar protein sorting-associated protein 26C [Cucumis sativus]4.0e-5494.21Show/hide
Query:  MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS
        MPVVELKLSRTNRIYRP EHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPI IVNRSILV PSGKLASGTNEIPFSVILRQP+
Subjt:  MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS

Query:  ENLGKFYETFHGTDINIQVTV
        ENLGK+YETFHGTDINIQ  V
Subjt:  ENLGKFYETFHGTDINIQVTV

XP_008464938.1 PREDICTED: Down syndrome critical region protein 3 homolog isoform X1 [Cucumis melo]3.9e-5797.52Show/hide
Query:  MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS
        MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIR+ALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS
Subjt:  MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS

Query:  ENLGKFYETFHGTDINIQVTV
        ENLGKFYETFHGTDINIQ  V
Subjt:  ENLGKFYETFHGTDINIQVTV

XP_022924207.1 Down syndrome critical region protein 3 homolog isoform X1 [Cucurbita moschata]8.6e-4988.98Show/hide
Query:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL
        VE++LSRTNRIYRP EHLQGQIIVNSRSSISH GI L LNGSVNLQVRGGSAGVIESVYGVIKP+ IVNRSI VRPSGKL SGT EIPFSVILRQPSENL
Subjt:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL

Query:  GKFYETFHGTDINIQVTV
        GKFYETFHGTDINIQ  V
Subjt:  GKFYETFHGTDINIQVTV

XP_038895697.1 vacuolar protein sorting-associated protein 26C isoform X1 [Benincasa hispida]1.7e-4990.68Show/hide
Query:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL
        VELKLSRTNRIYRP EHLQG IIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPI IVNR + VRPSGKLASGT EIPFSVILRQP+E L
Subjt:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL

Query:  GKFYETFHGTDINIQVTV
        GKFYETFHGTDINIQ  V
Subjt:  GKFYETFHGTDINIQVTV

TrEMBL top hitse value%identityAlignment
A0A0A0LT45 Uncharacterized protein1.9e-5494.21Show/hide
Query:  MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS
        MPVVELKLSRTNRIYRP EHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPI IVNRSILV PSGKLASGTNEIPFSVILRQP+
Subjt:  MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS

Query:  ENLGKFYETFHGTDINIQVTV
        ENLGK+YETFHGTDINIQ  V
Subjt:  ENLGKFYETFHGTDINIQVTV

A0A1S3CMM2 Down syndrome critical region protein 3 homolog isoform X11.9e-5797.52Show/hide
Query:  MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS
        MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIR+ALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS
Subjt:  MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS

Query:  ENLGKFYETFHGTDINIQVTV
        ENLGKFYETFHGTDINIQ  V
Subjt:  ENLGKFYETFHGTDINIQVTV

A0A5D3BIU2 Down syndrome critical region protein 3-like protein isoform X15.2e-6895.77Show/hide
Query:  MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS
        MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIR+ALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS
Subjt:  MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPS

Query:  ENLGKFYETFHGTDINIQVTVANLFTLLQTTRMPDGMVFTII
        ENLGKFYETFHGTDINIQVTVANLFTLLQTTRMPDGM    +
Subjt:  ENLGKFYETFHGTDINIQVTVANLFTLLQTTRMPDGMVFTII

A0A6J1E8A3 Down syndrome critical region protein 3 homolog isoform X14.2e-4988.98Show/hide
Query:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL
        VE++LSRTNRIYRP EHLQGQIIVNSRSSISH GI L LNGSVNLQVRGGSAGVIESVYGVIKP+ IVNRSI VRPSGKL SGT EIPFSVILRQPSENL
Subjt:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL

Query:  GKFYETFHGTDINIQVTV
        GKFYETFHGTDINIQ  V
Subjt:  GKFYETFHGTDINIQVTV

A0A6J1EBR4 Down syndrome critical region protein 3 homolog isoform X24.2e-4988.98Show/hide
Query:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL
        VE++LSRTNRIYRP EHLQGQIIVNSRSSISH GI L LNGSVNLQVRGGSAGVIESVYGVIKP+ IVNRSI VRPSGKL SGT EIPFSVILRQPSENL
Subjt:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL

Query:  GKFYETFHGTDINIQVTV
        GKFYETFHGTDINIQ  V
Subjt:  GKFYETFHGTDINIQVTV

SwissProt top hitse value%identityAlignment
O14972 Vacuolar protein sorting-associated protein 26C2.5e-1938.98Show/hide
Query:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL
        +++K+ R N++Y   E L G ++++S+ S+ H G+ L + G+VNLQ+   S GV E+ Y  +KPI I+N +I +   GK  SG  EIPF   L      +
Subjt:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL

Query:  GKFYETFHGTDINIQVTV
           YET+HG  +NIQ T+
Subjt:  GKFYETFHGTDINIQVTV

O35075 Vacuolar protein sorting-associated protein 26C1.1e-1938.98Show/hide
Query:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL
        +++K+ R N++Y   E L G ++++S+ S+ H G+ L + G+VNLQ+   S GV E+ Y  +KPI I+N +I V   GK+ SG  E+PF   L      +
Subjt:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL

Query:  GKFYETFHGTDINIQVTV
           YET+HG  +NIQ T+
Subjt:  GKFYETFHGTDINIQVTV

Q54DI8 Vacuolar protein sorting-associated protein 26C1.8e-1736.67Show/hide
Query:  VVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILV-RPSGKLASGTNEIPFSVILRQPSE
        V++LKL + ++IYRP   + G +++NS+  +SHSG+ + + G+V LQ+   S G+ E+ Y  +KPI +++ +I V    GK  +G  E+PF   L +P  
Subjt:  VVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILV-RPSGKLASGTNEIPFSVILRQPSE

Query:  NLGKFYETFHGTDINIQVTV
        N  + Y+T+HG  +NIQ ++
Subjt:  NLGKFYETFHGTDINIQVTV

Q5RF33 Vacuolar protein sorting-associated protein 26C2.5e-1938.98Show/hide
Query:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL
        +++K+ R N++Y   E L G ++++S+ S+ H G+ L + G+VNLQ+   S GV E+ Y  +KPI I+N +I +   GK  SG  EIPF   L      +
Subjt:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL

Query:  GKFYETFHGTDINIQVTV
           YET+HG  +NIQ T+
Subjt:  GKFYETFHGTDINIQVTV

Arabidopsis top hitse value%identityAlignment
AT1G48550.1 Vacuolar protein sorting-associated protein 263.6e-3766.38Show/hide
Query:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL
        V +KLSR+NRIYR  E ++G+I++ S +SISH  IRL++NGSVNLQVRGGSAGVIES YGVIKPI IV ++I V+ SGK+  GT EIPFS+ LR+P E +
Subjt:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL

Query:  -GKFYETFHGTDINIQ
          KFYETFHGT+INIQ
Subjt:  -GKFYETFHGTDINIQ

AT1G48550.2 Vacuolar protein sorting-associated protein 261.2e-3766.1Show/hide
Query:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL
        V +KLSR+NRIYR  E ++G+I++ S +SISH  IRL++NGSVNLQVRGGSAGVIES YGVIKPI IV ++I V+ SGK+  GT EIPFS+ LR+P E +
Subjt:  VELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENL

Query:  -GKFYETFHGTDINIQVT
          KFYETFHGT+INIQV+
Subjt:  -GKFYETFHGTDINIQVT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGTAGTGGAGCTCAAGCTTTCTCGAACTAATCGTATCTACCGGCCTTGTGAACATCTTCAAGGTCAAATCATCGTCAATTCTCGTTCATCGATTTCCCAT
TCTGGAATTCGCCTCGCTCTCAATGGATCCGTCAATTTGCAGGTTCGTGGAGGATCTGCGGGTGTTATTGAGTCGGTTTACGGTGTTATCAAGCCTATTTTGATA
GTGAATAGGAGCATTTTGGTTAGGCCATCTGGAAAGCTTGCTTCAGGTACAAACGAGATTCCATTTTCCGTAATTCTGAGACAGCCAAGTGAAAACTTGGGAAAA
TTTTACGAGACTTTTCATGGAACTGACATTAACATTCAGGTGACTGTTGCGAATCTTTTTACTTTGCTTCAGACTACGAGAATGCCTGATGGCATGGTTTTCACT
ATTATTCACTTCCAGCTCCAAAAAGAAACAAGATTTCTCATAACACGAACCTGA
mRNA sequenceShow/hide mRNA sequence
GGATGGAGGGGCATCGTGCAAATTTGTTATTATTATAAATGTTGGGGTCGTCTAGCGAATTGGCATTAAGTAGAGGGGTCAACTAGCAAACCCATATAATATTTT
CCCTCGACCGATCGTCGTCTTCACTTGGCGCTGCCGGTGTTAGCTTTCGGAGTTGCAATGCCAGTAGTGGAGCTCAAGCTTTCTCGAACTAATCGTATCTACCGG
CCTTGTGAACATCTTCAAGGTCAAATCATCGTCAATTCTCGTTCATCGATTTCCCATTCTGGAATTCGCCTCGCTCTCAATGGATCCGTCAATTTGCAGGTTCGT
GGAGGATCTGCGGGTGTTATTGAGTCGGTTTACGGTGTTATCAAGCCTATTTTGATAGTGAATAGGAGCATTTTGGTTAGGCCATCTGGAAAGCTTGCTTCAGGT
ACAAACGAGATTCCATTTTCCGTAATTCTGAGACAGCCAAGTGAAAACTTGGGAAAATTTTACGAGACTTTTCATGGAACTGACATTAACATTCAGGTGACTGTT
GCGAATCTTTTTACTTTGCTTCAGACTACGAGAATGCCTGATGGCATGGTTTTCACTATTATTCACTTCCAGCTCCAAAAAGAAACAAGATTTCTCATAACACGA
ACCTGATATTTGTCAATTACTGAATAATATGATAGTATTTAGTAACTGTAGATATAAGCAGAGGGTACCTACACAAGTCATTATCTGCCA
Protein sequenceShow/hide protein sequence
MPVVELKLSRTNRIYRPCEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENLGK
FYETFHGTDINIQVTVANLFTLLQTTRMPDGMVFTIIHFQLQKETRFLITRT