; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh00G000220 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh00G000220
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCCHC-type domain-containing protein
Genome locationCmo_Chr00:5301622..5303589
RNA-Seq ExpressionCmoCh00G000220
SyntenyCmoCh00G000220
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022930200.1 uncharacterized protein LOC111436716 [Cucurbita moschata]6.6e-13192.52Show/hide
Query:  PTTQIIKEEGSSTRTEVQHERVEDAVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRR
        PTTQIIKEEG STRTEVQHERVEDAVNTL YTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKD+YFSKVLIRT+SSLEFWKENFVNGLPKHFSRR
Subjt:  PTTQIIKEEGSSTRTEVQHERVEDAVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRR

Query:  IKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQS
        IKDGLKTKYNGTI WQTLSY SIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCK IEAPSTSRRKKVKTH KPYHSYRPRE YR+KPVQS
Subjt:  IKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQS

Query:  QKPTYSRRKYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQELKN
        QKPTYSRR+Y  TK H+GKK++TCFKCREEGHYANKCPIRGKINELDI  ELKN
Subjt:  QKPTYSRRKYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQELKN

XP_022933349.1 uncharacterized protein LOC111440658 [Cucurbita moschata]3.0e-13169.15Show/hide
Query:  LAIYEWNIDGLSDYLIMNVVNEMMMGAGT-----------------------------------------------PTTQIIKEEGSSTRTEVQHERVED
        +  YEWNIDGLSDYLIMNVVNEMMM AG                                                PTTQIIKEEG STRTEVQHERVED
Subjt:  LAIYEWNIDGLSDYLIMNVVNEMMMGAGT-----------------------------------------------PTTQIIKEEGSSTRTEVQHERVED

Query:  AVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIPWQTLSYGSIA
        AVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRT+SSLEFWKENFVNGLPKHFSRRIKDGLKTK                
Subjt:  AVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIPWQTLSYGSIA

Query:  SFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRKYILTKTHRGKKKQTC
                                   KELGRFCDQYGCKGIEAPSTSRRKKVKTH KPYHSYRPRETYRSKPVQSQKPTYSRRKYI TKTHRGKKKQTC
Subjt:  SFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRKYILTKTHRGKKKQTC

Query:  FKCREEGHYANKCPIRGKINELDIDQELKNQLLRLTLTDSSNRAREKSSNSKKNLIHILAQNTNQNKKEKGRAKDA
        FKCREEGHYANKCPIRGKINELDIDQELKNQLLRLTLTDS   ++ +    ++   +ILAQNTNQNKKEKGRAKDA
Subjt:  FKCREEGHYANKCPIRGKINELDIDQELKNQLLRLTLTDSSNRAREKSSNSKKNLIHILAQNTNQNKKEKGRAKDA

XP_023520850.1 uncharacterized protein LOC111784362 [Cucurbita pepo subsp. pepo]8.3e-28380.06Show/hide
Query:  MDTQSVYESQLNVITTDFQIDKEFFKADFMSTTNSSKRNAFFQTYKEAEQNELRAQWYSHMEAIKENIPFFEWFEENIMQVCTLTQRSWKTTKRGEVYSK
        MDTQSVYESQLNVIT DFQIDKEF KADFMSTTNSSKRNAFFQTYKEAE+NELRAQWYSHME IKENIPFFEWFEENI+Q+CTLTQRSWKTTKRGEVYSK
Subjt:  MDTQSVYESQLNVITTDFQIDKEFFKADFMSTTNSSKRNAFFQTYKEAEQNELRAQWYSHMEAIKENIPFFEWFEENIMQVCTLTQRSWKTTKRGEVYSK

Query:  HPPLEEVEFDNYYGEKVKASPFKHIPEGLEKGNPTLKDIKNIKHQNNYSNKILSTIATQLESIEG-----------------------IPILRPANLEIF
        HPPLEEVEFDNYYGEKVKASPFKHIPEGLEKGNPTLKDIKNI+HQNNYSNKILSTIATQLESIEG                       IPILRPANLEIF
Subjt:  HPPLEEVEFDNYYGEKVKASPFKHIPEGLEKGNPTLKDIKNIKHQNNYSNKILSTIATQLESIEG-----------------------IPILRPANLEIF

Query:  TKKISKEEAAMAKIEEKLDRILNPAMTPQDSSVNVVNKDDENQEFEDEIAN-----------------------------------IQFKEKTLQTQAHY
        TK+ISKEEAAMAKIEEKLDRILNPAMTPQDSSVNVVN DDENQEFEDEIAN                                   IQF+EKTLQTQAHY
Subjt:  TKKISKEEAAMAKIEEKLDRILNPAMTPQDSSVNVVNKDDENQEFEDEIAN-----------------------------------IQFKEKTLQTQAHY

Query:  DGLAIYEWNIDGLSDYLIMNVVNEMMMGAGT-----------------------------------------------PTTQIIKEEGSSTRTEVQHERV
        DGLAIYEWNIDGLSDYLIMNVVNEMMM AG                                                PTTQIIKEEG STRTEVQHERV
Subjt:  DGLAIYEWNIDGLSDYLIMNVVNEMMMGAGT-----------------------------------------------PTTQIIKEEGSSTRTEVQHERV

Query:  EDAVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIPWQTLSYGS
        EDAVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRT+SSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIPWQTLSYGS
Subjt:  EDAVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIPWQTLSYGS

Query:  IASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRKYILTKTHRGKKKQ
        IASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAP TSR+KKVKTH KPYHSYRPRE YRSKPVQSQKPTYSRRKYI TKTHRGKKKQ
Subjt:  IASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRKYILTKTHRGKKKQ

Query:  TCFKCREEGHYANKCPIRGKINELDIDQELKNQLLRLTLTDS
        TCFKCR EGHYA KCPI+GKINELDIDQELKNQLLRLTLT+S
Subjt:  TCFKCREEGHYANKCPIRGKINELDIDQELKNQLLRLTLTDS

XP_023522280.1 uncharacterized protein LOC111786173, partial [Cucurbita pepo subsp. pepo]5.0e-13994.7Show/hide
Query:  PTTQIIKEEGSSTRTEVQHERVEDAVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRR
        PTTQIIKEEG STRTEVQHERVEDAVNTLIYTLIEFFVG+PLKYQERSAEILMNLKCPTLGDFRWYK MY SKVLIRT+SSLEFWKENFVNGLPKHFSRR
Subjt:  PTTQIIKEEGSSTRTEVQHERVEDAVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRR

Query:  IKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQS
        IKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKL SSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTH KPY+SYRPRE YR+KPVQS
Subjt:  IKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQS

Query:  QKPTYSRRKYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQELKNQLLRLTLTDS
        QKPTYSRRKY  TKTHRGKKKQTCFKCREEGHYAN+CPIRGKINELDIDQELKNQLLRL LTDS
Subjt:  QKPTYSRRKYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQELKNQLLRLTLTDS

XP_023552915.1 uncharacterized protein LOC111810441 [Cucurbita pepo subsp. pepo]1.7e-14773.9Show/hide
Query:  MAKIEEKLDRILNPAMTPQDSSVNVVNKDDENQEFEDEIANIQFKEKTLQTQAHYDGLAIYEWNIDGLSDYLIMNVVNEMMMGAGTPTTQIIKEEGSSTR
        MAKIEEKLDRILNPAMTPQDSSVNVVN D +NQE ED+IAN + +E              +   I+ +S     N  N+          + + E   +TR
Subjt:  MAKIEEKLDRILNPAMTPQDSSVNVVNKDDENQEFEDEIANIQFKEKTLQTQAHYDGLAIYEWNIDGLSDYLIMNVVNEMMMGAGTPTTQIIKEEGSSTR

Query:  TEVQHERVEDAVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIP
        TEVQHERVEDAVNTLIYTLIEFFVGDP KYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRT+SSLEFWKENFVN LPKHFSRRIKDGLKTKYNGTIP
Subjt:  TEVQHERVEDAVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIP

Query:  WQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRKYILTK
        WQTLSYGSIASFIIEEGLRLCNESKIQNKLNSS+SNRKELGRFCDQYGCKGIEAPSTSRRKK KTH KPYHSYRPRETYR+KPVQSQKPTYSRRKY  TK
Subjt:  WQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRKYILTK

Query:  THRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQELKNQLLRLTLTDSSNRAR------EKSSNSKKNLIHILAQNTNQNKKEKG
         H+GKK+QTCFKCREEGHYANKCPIRGKINEL+IDQELKNQLLRL LTDS   ++      ++ S+S  N  +   ++  + K+ KG
Subjt:  THRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQELKNQLLRLTLTDSSNRAR------EKSSNSKKNLIHILAQNTNQNKKEKG

TrEMBL top hitse value%identityAlignment
A0A6J1EW44 uncharacterized protein LOC1114366181.1e-11295.28Show/hide
Query:  MNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK
        MNLKCPTLGDF+WYKDMYFSKVLIRT+SSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIPWQTLSYGSIAS IIEEGLRLCNESKIQNKLNSSISNRK
Subjt:  MNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK

Query:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRKYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQEL
        ELGRFCDQYGCKGIEAPSTSRRKKVKTH KPYHSYRPRETY +KPVQSQKP YSRRKYI TKTHRGKKKQT FKCREEGHY NKCPIRGKINELDIDQEL
Subjt:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRKYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQEL

Query:  KNQLLRLTLTDS
        KNQLLRLTLTDS
Subjt:  KNQLLRLTLTDS

A0A6J1EWB4 uncharacterized protein LOC1114367163.2e-13192.52Show/hide
Query:  PTTQIIKEEGSSTRTEVQHERVEDAVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRR
        PTTQIIKEEG STRTEVQHERVEDAVNTL YTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKD+YFSKVLIRT+SSLEFWKENFVNGLPKHFSRR
Subjt:  PTTQIIKEEGSSTRTEVQHERVEDAVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRR

Query:  IKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQS
        IKDGLKTKYNGTI WQTLSY SIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCK IEAPSTSRRKKVKTH KPYHSYRPRE YR+KPVQS
Subjt:  IKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQS

Query:  QKPTYSRRKYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQELKN
        QKPTYSRR+Y  TK H+GKK++TCFKCREEGHYANKCPIRGKINELDI  ELKN
Subjt:  QKPTYSRRKYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQELKN

A0A6J1EYM2 uncharacterized protein LOC1114397302.2e-11194.81Show/hide
Query:  MNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK
        MNLKCPTLGDFRWYKDMYFSKVLIRT+SSLEFWKENFVNGLPKHFSRRIKDGLKTK+NGTIPWQTLSYGSIASFIIEEGLRL NESKIQNKLNSSISNRK
Subjt:  MNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK

Query:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRKYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQEL
        ELGRFCDQYGCKGIEAPSTS R KVKTH KPYHSYRPRETYR+KPVQSQKP YSRRKYI TKTH GKKKQTCFKCREEGHYANKCPIRGKINELDIDQEL
Subjt:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRKYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQEL

Query:  KNQLLRLTLTDS
        KNQLL LTLTDS
Subjt:  KNQLLRLTLTDS

A0A6J1EZI3 uncharacterized protein LOC1114406581.4e-13169.15Show/hide
Query:  LAIYEWNIDGLSDYLIMNVVNEMMMGAGT-----------------------------------------------PTTQIIKEEGSSTRTEVQHERVED
        +  YEWNIDGLSDYLIMNVVNEMMM AG                                                PTTQIIKEEG STRTEVQHERVED
Subjt:  LAIYEWNIDGLSDYLIMNVVNEMMMGAGT-----------------------------------------------PTTQIIKEEGSSTRTEVQHERVED

Query:  AVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIPWQTLSYGSIA
        AVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRT+SSLEFWKENFVNGLPKHFSRRIKDGLKTK                
Subjt:  AVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIPWQTLSYGSIA

Query:  SFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRKYILTKTHRGKKKQTC
                                   KELGRFCDQYGCKGIEAPSTSRRKKVKTH KPYHSYRPRETYRSKPVQSQKPTYSRRKYI TKTHRGKKKQTC
Subjt:  SFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRKYILTKTHRGKKKQTC

Query:  FKCREEGHYANKCPIRGKINELDIDQELKNQLLRLTLTDSSNRAREKSSNSKKNLIHILAQNTNQNKKEKGRAKDA
        FKCREEGHYANKCPIRGKINELDIDQELKNQLLRLTLTDS   ++ +    ++   +ILAQNTNQNKKEKGRAKDA
Subjt:  FKCREEGHYANKCPIRGKINELDIDQELKNQLLRLTLTDSSNRAREKSSNSKKNLIHILAQNTNQNKKEKGRAKDA

A0A6J1IFV1 uncharacterized protein LOC1114729528.2e-11164.14Show/hide
Query:  MAKIEEKLDRILNPAMTPQDSSVNVVNKDDENQEFEDEIANIQFKEKTLQTQAHYDGLAIYEWNIDGLSDYLIMNVVNEMMMGAGTPTTQIIKEEGSSTR
        MAKIEEKLDRILNP +TPQDSSVNVVN DDE QEF DEI N                                                           
Subjt:  MAKIEEKLDRILNPAMTPQDSSVNVVNKDDENQEFEDEIANIQFKEKTLQTQAHYDGLAIYEWNIDGLSDYLIMNVVNEMMMGAGTPTTQIIKEEGSSTR

Query:  TEVQHERVEDAVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIP
                                      +E S EILMNLKCPTLG FRWYKDMYF+KVLIRTNSSLEFWKENFVNGLPK+FSRRIKDGLKTKYNGTIP
Subjt:  TEVQHERVEDAVNTLIYTLIEFFVGDPLKYQERSAEILMNLKCPTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIP

Query:  WQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRKYILTK
        WQT SY SI SFII EGLRLCNESKIQNKL+SSIS++KELGRFCDQYGCKGI+APSTSRRKKVKT+ KPY+SYRPRE YRSKP+QSQKPTYS+++Y  TK
Subjt:  WQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRKYILTK

Query:  THRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQELKNQLL
        THRGKK+Q CFKCREEGHYANKCPI+GKINELDIDQELK+QLL
Subjt:  THRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQELKNQLL

SwissProt top hitse value%identityAlignment
P03542 Capsid protein2.1e-0732.17Show/hide
Query:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRS-KPVQSQKPTYSRR
        NGT      S G  A  + EE  ++C+ SK Q KL         +G    +YGCK   +     +K+ K   K Y  Y+ ++ +RS K  + ++   S++
Subjt:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRS-KPVQSQKPTYSRR

Query:  KYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQE
        KY      +GKK   C+ C  EGHYAN+CP R    +  I Q+
Subjt:  KYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQE

P03543 Capsid protein2.8e-0733.56Show/hide
Query:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRP---RETYRS-KPVQSQKPTY
        NGT      S G  A  + EE  ++C+ SK Q KL         +G    +YG K      TS++K  K + K Y  Y+P   ++ +RS K  + ++   
Subjt:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRP---RETYRS-KPVQSQKPTY

Query:  SRRKYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQELKN
        S+RKY      +GKK   C+ C  EGHYAN+CP R    +  I Q+ +N
Subjt:  SRRKYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQELKN

P03544 Capsid protein9.6e-0832.88Show/hide
Query:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRP---RETYRS-KPVQSQKPTY
        NGT      S G  A  + EE  ++C+ +K Q KL         +G    +YGCK      TS++K  K + K Y +Y+P   ++ +RS K  + ++   
Subjt:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRP---RETYRS-KPVQSQKPTY

Query:  SRRKYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQE
        S++KY      +GKK   C+ C  EGHYAN+CP R    +  I Q+
Subjt:  SRRKYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQE

P05399 Probable capsid protein5.8e-0529.45Show/hide
Query:  SYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHS----------YRPRETYRSKPVQSQKPTYSRR
        S G     + EE  ++C  SK Q KL     N         +YGCK    PS S++KK     KP ++          + P + ++ K  +S+K  Y   
Subjt:  SYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHS----------YRPRETYRSKPVQSQKPTYSRR

Query:  KYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQELKN
                +GKK   C+ C  EGHYAN+CP R    +  + Q  +N
Subjt:  KYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQELKN

Q02951 Capsid protein5.3e-0631.13Show/hide
Query:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRK
        NGT      S G  A  + EE  ++C  SK Q KL         +G    +YGCK             KT  K YH+ R ++ Y+      +K  +   K
Subjt:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRK

Query:  YILTKTHRGKKKQTCFK----CR-----EEGHYANKCPIRGKINELDIDQE
        Y   K  +G K++ C K    CR      EGHYAN+CP R    +  I Q+
Subjt:  YILTKTHRGKKKQTCFK----CR-----EEGHYANKCPIRGKINELDIDQE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACTCAATCTGTCTACGAAAGCCAGCTAAATGTCATTACAACTGATTTCCAGATAGACAAAGAATTTTTTAAAGCAGATTTTATGTCAACTACCAACTCTTCAAA
AAGAAATGCCTTCTTCCAAACCTACAAAGAGGCTGAGCAAAATGAATTAAGAGCTCAGTGGTATTCTCACATGGAAGCCATCAAAGAAAATATACCATTCTTTGAATGGT
TTGAAGAAAATATTATGCAGGTATGCACCTTGACCCAGAGGAGTTGGAAGACTACCAAAAGAGGCGAGGTATATTCGAAACATCCTCCGTTAGAAGAAGTCGAATTCGAC
AATTACTACGGAGAAAAGGTCAAAGCTAGCCCTTTCAAACATATTCCGGAAGGACTAGAAAAGGGTAATCCGACCCTAAAGGATATCAAGAATATCAAGCATCAAAACAA
TTATTCAAATAAGATTTTATCCACGATCGCTACTCAACTTGAAAGTATCGAGGGAATACCAATACTCAGACCAGCAAATCTCGAAATATTTACAAAAAAGATTTCAAAAG
AAGAGGCTGCAATGGCCAAGATAGAGGAAAAGTTGGACAGGATATTAAATCCCGCCATGACGCCTCAAGATTCATCTGTCAATGTCGTTAACAAGGACGACGAGAACCAA
GAATTCGAAGACGAGATTGCAAATATCCAATTCAAAGAAAAGACACTACAAACTCAAGCTCATTACGATGGTTTAGCAATCTATGAATGGAATATCGATGGATTATCTGA
CTATCTGATAATGAATGTTGTCAATGAGATGATGATGGGCGCAGGCACGCCAACTACTCAAATTATCAAAGAAGAAGGTTCATCAACTAGGACCGAAGTACAACATGAAA
GAGTAGAGGATGCTGTCAACACCCTCATATATACCCTTATAGAATTCTTCGTCGGCGACCCTCTGAAATACCAGGAGAGATCCGCCGAGATACTCATGAATCTGAAATGC
CCTACCTTAGGTGATTTCAGGTGGTACAAAGACATGTACTTCAGCAAAGTTCTTATTAGAACAAATAGTTCGTTGGAATTCTGGAAAGAGAATTTCGTCAATGGACTACC
AAAACACTTTTCAAGGAGGATCAAAGATGGTCTTAAGACAAAGTACAATGGAACAATTCCATGGCAAACTTTGTCATACGGATCCATAGCATCCTTCATCATAGAAGAAG
GACTCAGACTTTGTAATGAGTCAAAGATTCAAAACAAGCTCAATTCTTCGATATCAAACAGAAAAGAGCTTGGTAGATTTTGCGATCAATATGGATGCAAGGGAATAGAA
GCTCCCTCAACCTCTAGACGAAAGAAGGTTAAGACGCATTCAAAACCTTATCATTCATACAGGCCTAGAGAAACATATCGGAGTAAGCCTGTGCAGTCTCAGAAGCCAAC
ATATTCAAGAAGGAAGTATATTCTTACAAAAACCCATAGAGGAAAGAAAAAGCAAACTTGCTTCAAATGTCGTGAAGAAGGACACTATGCTAACAAGTGTCCAATCAGAG
GAAAGATCAATGAGTTGGACATAGATCAAGAGCTGAAAAATCAGCTATTACGACTAACCCTAACCGACTCAAGCAATCGAGCGAGGGAGAAATCCTCGAACTCCAAGAAG
AATTTGATTCATATTCTAGCACAGAATACGAATCAGAACAAGAAGGAAAAAGGACGTGCGAAGGATGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATACTCAATCTGTCTACGAAAGCCAGCTAAATGTCATTACAACTGATTTCCAGATAGACAAAGAATTTTTTAAAGCAGATTTTATGTCAACTACCAACTCTTCAAA
AAGAAATGCCTTCTTCCAAACCTACAAAGAGGCTGAGCAAAATGAATTAAGAGCTCAGTGGTATTCTCACATGGAAGCCATCAAAGAAAATATACCATTCTTTGAATGGT
TTGAAGAAAATATTATGCAGGTATGCACCTTGACCCAGAGGAGTTGGAAGACTACCAAAAGAGGCGAGGTATATTCGAAACATCCTCCGTTAGAAGAAGTCGAATTCGAC
AATTACTACGGAGAAAAGGTCAAAGCTAGCCCTTTCAAACATATTCCGGAAGGACTAGAAAAGGGTAATCCGACCCTAAAGGATATCAAGAATATCAAGCATCAAAACAA
TTATTCAAATAAGATTTTATCCACGATCGCTACTCAACTTGAAAGTATCGAGGGAATACCAATACTCAGACCAGCAAATCTCGAAATATTTACAAAAAAGATTTCAAAAG
AAGAGGCTGCAATGGCCAAGATAGAGGAAAAGTTGGACAGGATATTAAATCCCGCCATGACGCCTCAAGATTCATCTGTCAATGTCGTTAACAAGGACGACGAGAACCAA
GAATTCGAAGACGAGATTGCAAATATCCAATTCAAAGAAAAGACACTACAAACTCAAGCTCATTACGATGGTTTAGCAATCTATGAATGGAATATCGATGGATTATCTGA
CTATCTGATAATGAATGTTGTCAATGAGATGATGATGGGCGCAGGCACGCCAACTACTCAAATTATCAAAGAAGAAGGTTCATCAACTAGGACCGAAGTACAACATGAAA
GAGTAGAGGATGCTGTCAACACCCTCATATATACCCTTATAGAATTCTTCGTCGGCGACCCTCTGAAATACCAGGAGAGATCCGCCGAGATACTCATGAATCTGAAATGC
CCTACCTTAGGTGATTTCAGGTGGTACAAAGACATGTACTTCAGCAAAGTTCTTATTAGAACAAATAGTTCGTTGGAATTCTGGAAAGAGAATTTCGTCAATGGACTACC
AAAACACTTTTCAAGGAGGATCAAAGATGGTCTTAAGACAAAGTACAATGGAACAATTCCATGGCAAACTTTGTCATACGGATCCATAGCATCCTTCATCATAGAAGAAG
GACTCAGACTTTGTAATGAGTCAAAGATTCAAAACAAGCTCAATTCTTCGATATCAAACAGAAAAGAGCTTGGTAGATTTTGCGATCAATATGGATGCAAGGGAATAGAA
GCTCCCTCAACCTCTAGACGAAAGAAGGTTAAGACGCATTCAAAACCTTATCATTCATACAGGCCTAGAGAAACATATCGGAGTAAGCCTGTGCAGTCTCAGAAGCCAAC
ATATTCAAGAAGGAAGTATATTCTTACAAAAACCCATAGAGGAAAGAAAAAGCAAACTTGCTTCAAATGTCGTGAAGAAGGACACTATGCTAACAAGTGTCCAATCAGAG
GAAAGATCAATGAGTTGGACATAGATCAAGAGCTGAAAAATCAGCTATTACGACTAACCCTAACCGACTCAAGCAATCGAGCGAGGGAGAAATCCTCGAACTCCAAGAAG
AATTTGATTCATATTCTAGCACAGAATACGAATCAGAACAAGAAGGAAAAAGGACGTGCGAAGGATGCATAA
Protein sequenceShow/hide protein sequence
MDTQSVYESQLNVITTDFQIDKEFFKADFMSTTNSSKRNAFFQTYKEAEQNELRAQWYSHMEAIKENIPFFEWFEENIMQVCTLTQRSWKTTKRGEVYSKHPPLEEVEFD
NYYGEKVKASPFKHIPEGLEKGNPTLKDIKNIKHQNNYSNKILSTIATQLESIEGIPILRPANLEIFTKKISKEEAAMAKIEEKLDRILNPAMTPQDSSVNVVNKDDENQ
EFEDEIANIQFKEKTLQTQAHYDGLAIYEWNIDGLSDYLIMNVVNEMMMGAGTPTTQIIKEEGSSTRTEVQHERVEDAVNTLIYTLIEFFVGDPLKYQERSAEILMNLKC
PTLGDFRWYKDMYFSKVLIRTNSSLEFWKENFVNGLPKHFSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIE
APSTSRRKKVKTHSKPYHSYRPRETYRSKPVQSQKPTYSRRKYILTKTHRGKKKQTCFKCREEGHYANKCPIRGKINELDIDQELKNQLLRLTLTDSSNRAREKSSNSKK
NLIHILAQNTNQNKKEKGRAKDA