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CmoCh00G000280 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh00G000280
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionexopolygalacturonase-like
Genome locationCmo_Chr00:5858915..5862024
RNA-Seq ExpressionCmoCh00G000280
SyntenyCmoCh00G000280
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR011050 - Pectin lyase fold/virulence factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022927431.1 exopolygalacturonase-like, partial [Cucurbita moschata]1.7e-2098.08Show/hide
Query:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAQK
        ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA K
Subjt:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAQK
XP_022927477.1 exopolygalacturonase-like [Cucurbita moschata]1.7e-2098.08Show/hide
Query:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAQK
        ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA K
Subjt:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAQK
XP_022929814.1 exopolygalacturonase-like [Cucurbita moschata]1.8e-3082.5Show/hide
Query:  EGVFDGQGKAAWKKNDCHKRINCAQLPIALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAQK
        EGVF GQGKAAWK+NDCHKRIN AQLP+ L NAWKDACTSNRSSAI IP GIF VK+G F+GP NSPIDFQLGGTLQA K
Subjt:  EGVFDGQGKAAWKKNDCHKRINCAQLPIALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAQK
XP_022929815.1 uncharacterized protein LOC111436318, partial [Cucurbita moschata]2.2e-2861.4Show/hide
Query:  RTSAKREGVFDGQGKAAWKKNDCHKRINCAQLPI----------------------------ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNS
        R +   EGVF GQGKAAWK+NDCHKRIN AQLP+                             LANAWKDACTSNRSSAI IP GIFKVK+G F+GPCNS
Subjt:  RTSAKREGVFDGQGKAAWKKNDCHKRINCAQLPI----------------------------ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNS

Query:  PIDFQLGGTLQAQK
        PIDFQLGGTLQA K
Subjt:  PIDFQLGGTLQAQK
XP_022932184.1 polygalacturonase-like [Cucurbita moschata]5.2e-2255.2Show/hide
Query:  EGVFDGQGKAAWKKNDCHKRINC------------------------AQLPIALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTL
        EGVFDGQGKAAWKKNDCHKRIN                           +  ALANAWKDACTSNRSSAIVIPGGIF                       
Subjt:  EGVFDGQGKAAWKKNDCHKRINC------------------------AQLPIALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTL

Query:  QAQKVKEFLMAKERQLGKRMIAINA
           KVKEFLMAKERQLGKRMIAINA
Subjt:  QAQKVKEFLMAKERQLGKRMIAINA
TrEMBL top hitse value%identityAlignment
A0A6J1EHN0 exopolygalacturonase-like8.2e-2198.08Show/hide
Query:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAQK
        ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA K
Subjt:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAQK
A0A6J1EPU1 exopolygalacturonase-like8.2e-2198.08Show/hide
Query:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAQK
        ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA K
Subjt:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAQK
A0A6J1EPV8 exopolygalacturonase-like8.7e-3182.5Show/hide
Query:  EGVFDGQGKAAWKKNDCHKRINCAQLPIALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAQK
        EGVF GQGKAAWK+NDCHKRIN AQLP+ L NAWKDACTSNRSSAI IP GIF VK+G F+GP NSPIDFQLGGTLQA K
Subjt:  EGVFDGQGKAAWKKNDCHKRINCAQLPIALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAQK
A0A6J1EVC7 uncharacterized protein LOC1114363181.1e-2861.4Show/hide
Query:  RTSAKREGVFDGQGKAAWKKNDCHKRINCAQLPI----------------------------ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNS
        R +   EGVF GQGKAAWK+NDCHKRIN AQLP+                             LANAWKDACTSNRSSAI IP GIFKVK+G F+GPCNS
Subjt:  RTSAKREGVFDGQGKAAWKKNDCHKRINCAQLPI----------------------------ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNS

Query:  PIDFQLGGTLQAQK
        PIDFQLGGTLQA K
Subjt:  PIDFQLGGTLQAQK
A0A6J1EWB1 polygalacturonase-like2.5e-2255.2Show/hide
Query:  EGVFDGQGKAAWKKNDCHKRINC------------------------AQLPIALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTL
        EGVFDGQGKAAWKKNDCHKRIN                           +  ALANAWKDACTSNRSSAIVIPGGIF                       
Subjt:  EGVFDGQGKAAWKKNDCHKRINC------------------------AQLPIALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTL

Query:  QAQKVKEFLMAKERQLGKRMIAINA
           KVKEFLMAKERQLGKRMIAINA
Subjt:  QAQKVKEFLMAKERQLGKRMIAINA
SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)4.2e-0650Show/hide
Query:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
        AL  AWK+AC S   S I++P G F V     +GPC S I  QL GTL+A
Subjt:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
Q05967 Polygalacturonase3.8e-0745.45Show/hide
Query:  AQLPIALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
        A +  AL NA+K+AC S   S IVIP G F + +   +GPC SP++ Q+  TL+A
Subjt:  AQLPIALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
Q39766 Polygalacturonase9.3e-0642.55Show/hide
Query:  NAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
        +AWK+AC S   S +VIP G + + +   +GPC +PI+  + GT+QA
Subjt:  NAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
Q39786 Polygalacturonase9.3e-0642.55Show/hide
Query:  NAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
        +AWK+AC S   S +VIP G + + +   +GPC +PI+  + GT+QA
Subjt:  NAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
Q40312 Polygalacturonase1.3e-0746Show/hide
Query:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
        AL +AW +AC S  ++ IVIP G +++     KGPC +PI+ Q+ GT+QA
Subjt:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
Arabidopsis top hitse value%identityAlignment
AT1G17150.1 Pectin lyase-like superfamily protein1.5e-0648Show/hide
Query:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
        A  NAWKDAC  N  S + IP G F +    F GPC+  I F + GTL A
Subjt:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
AT1G48100.1 Pectin lyase-like superfamily protein9.6e-0641.67Show/hide
Query:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTL
        A  +AWK AC       +   GG+FK+   IF GPC   + FQL G L
Subjt:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTL
AT2G43890.1 Pectin lyase-like superfamily protein5.6e-0642Show/hide
Query:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
        A   AW+ AC S  +  + +P G F +K   F+GPC S I FQ+ GT+ A
Subjt:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
AT3G07820.1 Pectin lyase-like superfamily protein1.9e-0646Show/hide
Query:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
        AL  A+  AC S+  S +VIP G FK+ E   +GPC +PI+  L GT++A
Subjt:  ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQA
AT5G48140.1 Pectin lyase-like superfamily protein2.5e-0662.07Show/hide
Query:  GVFDGQGKAAWKKNDCHKRINCAQLPIAL
        GVFDG+G AAW+ N+CHK  NC +LPI++
Subjt:  GVFDGQGKAAWKKNDCHKRINCAQLPIAL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAGGAGAGGGGAGGAAAACTCGTCAAGCACAAGGAGGACAAGTGCCAAGCGTGAAGGAGTTTTTGATGGCCAAGGAAAGGCAGCTTGGAAAAAGAATGATTGCCA
TAAACGCATAAATTGTGCCCAACTCCCCATTGCTTTAGCAAATGCATGGAAGGATGCATGCACGTCCAATCGTTCTAGTGCGATTGTTATTCCAGGAGGGATATTTAAAG
TAAAGGAAGGGATATTTAAAGGACCTTGTAATAGCCCAATTGACTTTCAACTTGGAGGAACATTGCAGGCACAAAAAGTGAAGGAGTTTTTGATGGCCAAGGAAAGGCAG
CTTGGAAAAAGAATGATTGCCATAAACGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAGGAGAGGGGAGGAAAACTCGTCAAGCACAAGGAGGACAAGTGCCAAGCGTGAAGGAGTTTTTGATGGCCAAGGAAAGGCAGCTTGGAAAAAGAATGATTGCCA
TAAACGCATAAATTGTGCCCAACTCCCCATTGCTTTAGCAAATGCATGGAAGGATGCATGCACGTCCAATCGTTCTAGTGCGATTGTTATTCCAGGAGGGATATTTAAAG
TAAAGGAAGGGATATTTAAAGGACCTTGTAATAGCCCAATTGACTTTCAACTTGGAGGAACATTGCAGGCACAAAAAGTGAAGGAGTTTTTGATGGCCAAGGAAAGGCAG
CTTGGAAAAAGAATGATTGCCATAAACGCATAA
Protein sequenceShow/hide protein sequence
MLRRGEENSSSTRRTSAKREGVFDGQGKAAWKKNDCHKRINCAQLPIALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAQKVKEFLMAKERQ
LGKRMIAINA