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CmoCh00G000650 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh00G000650
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRegulator of rDNA transcription protein 15
Genome locationCmo_Chr00:15377083..15378457
RNA-Seq ExpressionCmoCh00G000650
SyntenyCmoCh00G000650
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG9438743.1 hypothetical protein H6P81_021338 [Aristolochia fimbriata]6.7e-0855.71Show/hide
Query:  PLNDKVL-AESLKQHP-----PIPGRHRLWLRLGRAGGTTRPVKARSASPTEGTSQSML-TIGGPIDSTQ
        P N K L +  +++ P     PIPGRHRLWLRLGR GGTTRPVKAR+  P EG   +     GGPID TQ
Subjt:  PLNDKVL-AESLKQHP-----PIPGRHRLWLRLGRAGGTTRPVKARSASPTEGTSQSML-TIGGPIDSTQ

KEH16994.1 senescence-associated protein [Medicago truncatula]2.7e-0935.36Show/hide
Query:  VRC-LGIDNDPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ---HPPIPGR--------HRLW------------
        +RC  GIDNDPSAGSPTETLLRLLLPLNDKV                            +A   K     PPI  R        + +W            
Subjt:  VRC-LGIDNDPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ---HPPIPGR--------HRLW------------

Query:  ------------------------------------------LRLGRAGGTTRPVKARSASPTEGTSQSMLTIGGPIDSTQ
                                                  +R+  AGGTTRP+KARSASP EGTSQ + TIGGPID TQ
Subjt:  ------------------------------------------LRLGRAGGTTRPVKARSASPTEGTSQSMLTIGGPIDSTQ

KEH17021.1 senescence-associated protein [Medicago truncatula]2.7e-0934.76Show/hide
Query:  VRC-LGIDNDPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ---HPPIPGR--------HRLW------------
        +RC  GIDNDPSAGSPTETLLRLLLPLNDKV                            +A   K     PPI  R        + +W            
Subjt:  VRC-LGIDNDPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ---HPPIPGR--------HRLW------------

Query:  -----------------------------------------------LRLGRAGGTTRPVKARSASPTEGTSQSMLTIGGPIDSTQG
                                                       +R+  AGGTTRP+KARSASP EGTSQ + TIGGPID TQG
Subjt:  -----------------------------------------------LRLGRAGGTTRPVKARSASPTEGTSQSMLTIGGPIDSTQG

KOM53365.1 hypothetical protein LR48_Vigan09g202400 [Vigna angularis]2.2e-1143.14Show/hide
Query:  SEGARMLPPTQKVVRCL---GIDNDPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ---HPPIPGR--------H
        S G R    T+ V R L   GIDNDPSAG PT+TLLRLLLPLNDKV                            +A   K     PPI  R        +
Subjt:  SEGARMLPPTQKVVRCL---GIDNDPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ---HPPIPGR--------H

Query:  RLWLRLGRAGGTTRPVKARSASPTEGTSQSMLTIGGPIDSTQGPTTSFLTATT
         +W      GGTTRPVKARSASP EGTS+ + T  G ID TQ      L ATT
Subjt:  RLWLRLGRAGGTTRPVKARSASPTEGTSQSMLTIGGPIDSTQGPTTSFLTATT

OIV89726.1 hypothetical protein TanjilG_03599 [Lupinus angustifolius]4.6e-0944.92Show/hide
Query:  DPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ---HPPIPGR--------HRLWLRLGRAGGTTRPVKARSASPT
        D + GSPTETLLRLLLPLNDKV                            +A   K     PPI  R        + +W     AGGTTRPVKARSASP 
Subjt:  DPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ---HPPIPGR--------HRLWLRLGRAGGTTRPVKARSASPT

Query:  EGTSQSMLTIGGPIDSTQ
        EGTS+ + T GGPID TQ
Subjt:  EGTSQSMLTIGGPIDSTQ

TrEMBL top hitse value%identityAlignment
A0A072TIH7 Senescence-associated protein1.3e-0934.76Show/hide
Query:  VRC-LGIDNDPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ---HPPIPGR--------HRLW------------
        +RC  GIDNDPSAGSPTETLLRLLLPLNDKV                            +A   K     PPI  R        + +W            
Subjt:  VRC-LGIDNDPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ---HPPIPGR--------HRLW------------

Query:  -----------------------------------------------LRLGRAGGTTRPVKARSASPTEGTSQSMLTIGGPIDSTQG
                                                       +R+  AGGTTRP+KARSASP EGTSQ + TIGGPID TQG
Subjt:  -----------------------------------------------LRLGRAGGTTRPVKARSASPTEGTSQSMLTIGGPIDSTQG

A0A0L9VE83 Uncharacterized protein1.1e-1143.14Show/hide
Query:  SEGARMLPPTQKVVRCL---GIDNDPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ---HPPIPGR--------H
        S G R    T+ V R L   GIDNDPSAG PT+TLLRLLLPLNDKV                            +A   K     PPI  R        +
Subjt:  SEGARMLPPTQKVVRCL---GIDNDPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ---HPPIPGR--------H

Query:  RLWLRLGRAGGTTRPVKARSASPTEGTSQSMLTIGGPIDSTQGPTTSFLTATT
         +W      GGTTRPVKARSASP EGTS+ + T  G ID TQ      L ATT
Subjt:  RLWLRLGRAGGTTRPVKARSASPTEGTSQSMLTIGGPIDSTQGPTTSFLTATT

A0A2N9I9H1 Uncharacterized protein3.1e-1145.9Show/hide
Query:  GIDNDPSAGSPTETLLRLLLPLNDKVLAES------------LKQH-------------------PPIPGR--------HRLWLRLGRAGGTTRPVKARS
        G DNDPSAGSPTETLLRLLLPLNDKV   S              +H                   PPI  R        + +W      GGTTRPVKARS
Subjt:  GIDNDPSAGSPTETLLRLLLPLNDKVLAES------------LKQH-------------------PPIPGR--------HRLWLRLGRAGGTTRPVKARS

Query:  ASPTEGTSQSMLTIGGPIDSTQ
        ASP EGTS+ + T GGP+  TQ
Subjt:  ASPTEGTSQSMLTIGGPIDSTQ

A0A2N9IDP5 Uncharacterized protein3.1e-1145.9Show/hide
Query:  GIDNDPSAGSPTETLLRLLLPLNDKVLAES------------LKQH-------------------PPIPGR--------HRLWLRLGRAGGTTRPVKARS
        G DNDPSAGSPTETLLRLLLPLNDKV   S              +H                   PPI  R        + +W      GGTTRPVKARS
Subjt:  GIDNDPSAGSPTETLLRLLLPLNDKVLAES------------LKQH-------------------PPIPGR--------HRLWLRLGRAGGTTRPVKARS

Query:  ASPTEGTSQSMLTIGGPIDSTQ
        ASP EGTS+ + T GGP+  TQ
Subjt:  ASPTEGTSQSMLTIGGPIDSTQ

A0A2N9IFN0 Uncharacterized protein6.3e-1246.34Show/hide
Query:  GIDNDPSAGSPTETLLRLLLPLNDKVLAES------------LKQH-------------------PPIPGR--------HRLWLRLGRAGGTTRPVKARS
        G DNDPSAGSPTETLLRLLLPLNDKV   S              +H                   PPI  R        + +W      GGTTRPVKARS
Subjt:  GIDNDPSAGSPTETLLRLLLPLNDKVLAES------------LKQH-------------------PPIPGR--------HRLWLRLGRAGGTTRPVKARS

Query:  ASPTEGTSQSMLTIGGPIDSTQG
        ASP EGTS+ + T GGP+  TQG
Subjt:  ASPTEGTSQSMLTIGGPIDSTQG

SwissProt top hitse value%identityAlignment
P0C5Q0 Putative uncharacterized protein YLR154W-F1.4e-0563.64Show/hide
Query:  MLPPTQK--VVRCLGIDNDPSAGSPTETLLRLLLPLNDKVLAES
        ML P QK    + L   NDPSAGSPTETLLRLL+PLND+V   S
Subjt:  MLPPTQK--VVRCLGIDNDPSAGSPTETLLRLLLPLNDKVLAES

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTGCCCCTCTCACACCGAGACCGGGGCAAGGGGCAAGCTTATTCGTTTGAGCTGCTTGGCGCGACTTGCGTCGATTTTGGTTTACGCATCAGAGGGGGCA
CGAATGCTCCCCCCGACACAAAAAGTCGTTCGATGTTTAGGCATCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTA
AATGATAAGGTGTTGGCGGAGTCCTTAAAGCAACATCCGCCAATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGCGCTGGAGGCACGACCCGGCCAGTT
AAGGCCAGGAGCGCATCACCGACAGAAGGGACGAGCCAATCGATGCTCACCATAGGCGGACCGATCGACTCAACCCAAGGTCCAACTACGAGCTTTTTAACTGCA
ACAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTTGCCCCTCTCACACCGAGACCGGGGCAAGGGGCAAGCTTATTCGTTTGAGCTGCTTGGCGCGACTTGCGTCGATTTTGGTTTACGCATCAGAGGGGGCA
CGAATGCTCCCCCCGACACAAAAAGTCGTTCGATGTTTAGGCATCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTA
AATGATAAGGTGTTGGCGGAGTCCTTAAAGCAACATCCGCCAATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGCGCTGGAGGCACGACCCGGCCAGTT
AAGGCCAGGAGCGCATCACCGACAGAAGGGACGAGCCAATCGATGCTCACCATAGGCGGACCGATCGACTCAACCCAAGGTCCAACTACGAGCTTTTTAACTGCA
ACAACTTAA
Protein sequenceShow/hide protein sequence
MLCPSHTETGARGKLIRLSCLARLASILVYASEGARMLPPTQKVVRCLGIDNDPSAGSPTETLLRLLLPLNDKVLAESLKQHPPIPGRHRLWLRLGRAGGTTRPV
KARSASPTEGTSQSMLTIGGPIDSTQGPTTSFLTATT