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CmoCh00G000730 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh00G000730
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A1
Genome locationCmo_Chr00:15918793..15921136
RNA-Seq ExpressionCmoCh00G000730
SyntenyCmoCh00G000730
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0034357 - photosynthetic membrane (cellular component)
GO:0016491 - oxidoreductase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domainsIPR006243 - Photosystem I PsaA
IPR036408 - Photosystem I PsaA/PsaB superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AWI70480.1 photosystem I P700 chlorophyll a apoprotein A1 [Leuconotis anceps]7.9e-2058.49Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL
        AAPK AWFQDVESM NHHLA                             DPKEIPLPHEFILNRDLLAQL PSF E G+ P F L   K AEFLTFH GL
Subjt:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL

Query:  DSVTGG
        D VTGG
Subjt:  DSVTGG

CAB4073132.1 unnamed protein product [Lactuca saligna]9.3e-2157.14Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL
        AAPK AWFQDVESM NHHLA                             DPKEIPLPHEFILNRDLLAQL PSF E G+ P F L   K A+FLTF  GL
Subjt:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL

Query:  DSVTGGPNEALV
        D VTGGP  ALV
Subjt:  DSVTGGPNEALV

QVL24351.1 photosystem I P700 chlorophyll a apoprotein A1 [Colquhounia vestita]2.1e-2058.49Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL
        AAPKWAWFQDVESM NHHLA                             DPKEIPLPHEFILNRDLLAQL PSF E G+ P F L   K AEFLTF  GL
Subjt:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL

Query:  DSVTGG
        D VTGG
Subjt:  DSVTGG

THU42349.1 hypothetical protein C4D60_Mb00t12030 [Musa balbisiana]8.4e-2240.28Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL
        AAPK AWFQDVESM NHHLA                             DPKEIPLPHEFILNRDLLAQL PSF E G+ P F L   K AEFLTF  GL
Subjt:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL

Query:  DSVTGG-------PNEALVGYKRYLRGRL----------IKVHLQARYNGPRS-----------------DNRHQF-------------DLLGGGGDLVA
        D +TGG        +   +     + G +          IK  L+A    P+                   N H                L  GGG+LVA
Subjt:  DSVTGG-------PNEALVGYKRYLRGRL----------IKVHLQARYNGPRS-----------------DNRHQF-------------DLLGGGGDLVA

Query:  VSGKVALLPIP
        V GKVALLPIP
Subjt:  VSGKVALLPIP

TYH79918.1 hypothetical protein ES332_D03G096800v1 [Gossypium tomentosum]1.9e-2172.62Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGLDSVTGG
        AAPK AWFQDVESM NHHLA       DPKEIPLPHEFILNRDLLAQL PSF E G+ P F L   K AEFLTF  GLD VTGG
Subjt:  AAPKWAWFQDVESMFNHHLA-------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGLDSVTGG

TrEMBL top hitse value%identityAlignment
A0A251TWI7 Putative photosystem I PsaA/PsaB9.1e-2239.91Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL
        AAPK AWFQDVESM NHHLA                             DPKEI LPHEFILN+DLLAQL PSF E G+ P F L   K A+FLTF  GL
Subjt:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL

Query:  DSVTG--------------------GPNEALVGYKRYLRGRLIK---------VHLQA-------------RYNGPRS-----------------DNRHQ
        D VTG                    G  + L  +K    G++ K          H Q              RY  P +                 +N+HQ
Subjt:  DSVTG--------------------GPNEALVGYKRYLRGRLIK---------VHLQA-------------RYNGPRS-----------------DNRHQ

Query:  FDLLGGGGDLVAVSGKVALLPIP
        F+L  GGGDLVAV GKVALLPIP
Subjt:  FDLLGGGGDLVAVSGKVALLPIP

A0A2S1U6D7 Photosystem I P700 chlorophyll a apoprotein A13.8e-2058.49Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL
        AAPK AWFQDVESM NHHLA                             DPKEIPLPHEFILNRDLLAQL PSF E G+ P F L   K AEFLTFH GL
Subjt:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL

Query:  DSVTGG
        D VTGG
Subjt:  DSVTGG

A0A4S8I4A8 Photosystem I P700 chlorophyll a apoprotein A14.1e-2240.28Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL
        AAPK AWFQDVESM NHHLA                             DPKEIPLPHEFILNRDLLAQL PSF E G+ P F L   K AEFLTF  GL
Subjt:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL

Query:  DSVTGG-------PNEALVGYKRYLRGRL----------IKVHLQARYNGPRS-----------------DNRHQF-------------DLLGGGGDLVA
        D +TGG        +   +     + G +          IK  L+A    P+                   N H                L  GGG+LVA
Subjt:  DSVTGG-------PNEALVGYKRYLRGRL----------IKVHLQARYNGPRS-----------------DNRHQF-------------DLLGGGGDLVA

Query:  VSGKVALLPIP
        V GKVALLPIP
Subjt:  VSGKVALLPIP

A0A5D2LKT2 Photosystem I P700 chlorophyll a apoprotein A19.1e-2272.62Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGLDSVTGG
        AAPK AWFQDVESM NHHLA       DPKEIPLPHEFILNRDLLAQL PSF E G+ P F L   K AEFLTF  GLD VTGG
Subjt:  AAPKWAWFQDVESMFNHHLA-------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGLDSVTGG

A0A6S7KVH3 Uncharacterized protein4.5e-2157.14Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL
        AAPK AWFQDVESM NHHLA                             DPKEIPLPHEFILNRDLLAQL PSF E G+ P F L   K A+FLTF  GL
Subjt:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL

Query:  DSVTGGPNEALV
        D VTGGP  ALV
Subjt:  DSVTGGPNEALV

SwissProt top hitse value%identityAlignment
A0A335 Photosystem I P700 chlorophyll a apoprotein A18.7e-2257.55Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL
        AAPK AWFQDVESM NHHLA                             DPKEIPLPHEFILNRDLLAQL PSF E G+ P F L   K AEFLTF  GL
Subjt:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL

Query:  DSVTGG
        D VTGG
Subjt:  DSVTGG

A1EA08 Photosystem I P700 chlorophyll a apoprotein A18.7e-2257.55Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL
        AAPK AWFQDVESM NHHLA                             DPKEIPLPHEFILNRDLLAQL PSF E G+ P F L   K AEFLTF  GL
Subjt:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL

Query:  DSVTGG
        D VTGG
Subjt:  DSVTGG

Q06GZ7 Photosystem I P700 chlorophyll a apoprotein A18.7e-2257.55Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL
        AAPK AWFQDVESM NHHLA                             DPKEIPLPHEFILNRDLLAQL PSF E G+ P F L   K AEFLTF  GL
Subjt:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL

Query:  DSVTGG
        D VTGG
Subjt:  DSVTGG

Q2QD89 Photosystem I P700 chlorophyll a apoprotein A18.7e-2257.55Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL
        AAPK AWFQDVESM NHHLA                             DPKEIPLPHEFILNRDLLAQL PSF E G+ P F L   K AEFLTF  GL
Subjt:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL

Query:  DSVTGG
        D VTGG
Subjt:  DSVTGG

Q70Y03 Photosystem I P700 chlorophyll a apoprotein A13.9e-2258.49Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL
        AAPK AWFQDVESM NHHLA                             DPKEIPLPHEFILNRDLLAQL PSF E GS P F L   K AEFLTF  GL
Subjt:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL

Query:  DSVTGG
        D VTGG
Subjt:  DSVTGG

Arabidopsis top hitse value%identityAlignment
ATCG00350.1 Photosystem I, PsaA/PsaB protein1.4e-2256.6Show/hide
Query:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL
        AAPK AWFQDVESM NHHLA                             DPKEIPLPHEFILNRDLLAQL PSF E G+ P F L   K +EFLTF  GL
Subjt:  AAPKWAWFQDVESMFNHHLA-----------------------------DPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIK-AEFLTFHRGL

Query:  DSVTGG
        D VTGG
Subjt:  DSVTGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTCTGCATCAGTCAAATCAACTAAAAGGGAGAATTTCTCAAGCAGGGAAGAACCAAGCAAGATCGTTCAATTTCCTTTGGCTGCTCCAAAATGGGCTTGGTTCCA
AGATGTAGAATCCATGTTCAATCACCATTTAGCGGATCCTAAAGAGATTCCACTTCCTCATGAATTTATCTTGAATAGGGATCTTTTGGCGCAACTTTCTCCTAGTTTTG
TTGAGGGAGGGAGCAACCCCATTTTTCACTTGGAATTGATCAAAGCAGAATTTCTGACTTTTCATAGAGGATTAGATTCAGTAACCGGTGGACCAAATGAGGCATTGGTA
GGGTATAAAAGATATTTGAGAGGGAGGCTCATCAAGGTCCATTTACAGGCCAGGTATAACGGCCCTCGGTCCGACAACAGGCACCAGTTTGACTTGCTTGGGGGGGGTGG
TGATTTAGTGGCAGTGAGCGGCAAAGTGGCTTTGTTACCTATTCCGTCAGATGTTTGGGGTAGTGTAAGTGATCAAGCAAGGGGGAATAACTCATGTTGCGGGAGGAAAC
TTTGTGCAGAGTTCCATTATTACTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTCTGCATCAGTCAAATCAACTAAAAGGGAGAATTTCTCAAGCAGGGAAGAACCAAGCAAGATCGTTCAATTTCCTTTGGCTGCTCCAAAATGGGCTTGGTTCCA
AGATGTAGAATCCATGTTCAATCACCATTTAGCGGATCCTAAAGAGATTCCACTTCCTCATGAATTTATCTTGAATAGGGATCTTTTGGCGCAACTTTCTCCTAGTTTTG
TTGAGGGAGGGAGCAACCCCATTTTTCACTTGGAATTGATCAAAGCAGAATTTCTGACTTTTCATAGAGGATTAGATTCAGTAACCGGTGGACCAAATGAGGCATTGGTA
GGGTATAAAAGATATTTGAGAGGGAGGCTCATCAAGGTCCATTTACAGGCCAGGTATAACGGCCCTCGGTCCGACAACAGGCACCAGTTTGACTTGCTTGGGGGGGGTGG
TGATTTAGTGGCAGTGAGCGGCAAAGTGGCTTTGTTACCTATTCCGTCAGATGTTTGGGGTAGTGTAAGTGATCAAGCAAGGGGGAATAACTCATGTTGCGGGAGGAAAC
TTTGTGCAGAGTTCCATTATTACTATTAA
Protein sequenceShow/hide protein sequence
MLSASVKSTKRENFSSREEPSKIVQFPLAAPKWAWFQDVESMFNHHLADPKEIPLPHEFILNRDLLAQLSPSFVEGGSNPIFHLELIKAEFLTFHRGLDSVTGGPNEALV
GYKRYLRGRLIKVHLQARYNGPRSDNRHQFDLLGGGGDLVAVSGKVALLPIPSDVWGSVSDQARGNNSCCGRKLCAEFHYYY