CuGenDBv2

Gene ID	CmoCh00G000770
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Thioredoxin-like protein YLS8
Genome location	Cmo_Chr00:16029728..16030027
RNA-Seq Expression	CmoCh00G000770
Synteny	CmoCh00G000770
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005681 - spliceosomal complex (cellular component) GO:0005682 - U5 snRNP (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR004123 - Dim1 family IPR036249 - Thioredoxin-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

RWV83246.1 hypothetical protein GW17_00055177 [Ensete ventricosum]

1.5e-46

95.1

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Query:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY
        MDEVL+SVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL   QEFINI+ETVYRGARKGRGLVIAPKDYSTKY
Subjt:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY

Query:  RY
        RY
Subjt:  RY

XP_016177040.1 thioredoxin-like protein YLS8 [Arachis ipaensis]

5.1e-47

97.06

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Query:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY
        MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL   QEFINIIETVYRGARKGRGLVIAPKDYSTKY
Subjt:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY

Query:  RY
        RY
Subjt:  RY

XP_022933159.1 thioredoxin-like protein YLS8 [Cucurbita moschata]

1.2e-48

100

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Query:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

XP_022942612.1 thioredoxin-like protein YLS8 [Cucurbita moschata]

5.1e-47

97.06

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Query:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY
        MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL   QEFINIIETVYRGARKGRGLVIAPKDYSTKY
Subjt:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY

Query:  RY
        RY
Subjt:  RY

XP_031129557.1 thioredoxin-like protein YLS8 [Ipomoea triloba]

1.1e-46

95.1

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Query:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY
        MDEVLASVAET+KNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL   QEFINI+ETVYRGARKGRGLVIAPKDYSTKY
Subjt:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY

Query:  RY
        RY
Subjt:  RY

TrEMBL top hits

e value

%identity

Alignment

A0A444CBJ8 Uncharacterized protein

7.2e-47

95.1

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Query:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY
        MDEVL+SVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL   QEFINI+ETVYRGARKGRGLVIAPKDYSTKY
Subjt:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY

Query:  RY
        RY
Subjt:  RY

A0A444XN48 Thioredoxin-like protein

2.5e-47

97.06

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Query:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY
        MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL   QEFINIIETVYRGARKGRGLVIAPKDYSTKY
Subjt:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY

Query:  RY
        RY
Subjt:  RY

A0A6J1EYZ1 thioredoxin-like protein YLS8

5.9e-49

100

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Query:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

A0A6J1FV92 thioredoxin-like protein YLS8

2.5e-47

97.06

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Query:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY
        MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL   QEFINIIETVYRGARKGRGLVIAPKDYSTKY
Subjt:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY

Query:  RY
        RY
Subjt:  RY

A0A6J1JIE4 thioredoxin-like protein YLS8

2.5e-47

97.06

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Query:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY
        MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL   QEFINIIETVYRGARKGRGLVIAPKDYSTKY
Subjt:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY

Query:  RY
        RY
Subjt:  RY

SwissProt top hits

e value

%identity

Alignment

P83876 Thioredoxin-like protein 4A

6.5e-45

85.29

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Query:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY
        MDEVL S+AE +KNFAVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA+   QE ++IIETVYRGARKGRGLV++PKDYSTKY
Subjt:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY

Query:  RY
        RY
Subjt:  RY

P83877 Thioredoxin-like protein 4A

6.5e-45

85.29

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Query:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY
        MDEVL S+AE +KNFAVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA+   QE ++IIETVYRGARKGRGLV++PKDYSTKY
Subjt:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY

Query:  RY
        RY
Subjt:  RY

P87215 Mitosis protein dim1

5.8e-38

74.26

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Query:  DEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKYR
        DEVL  +AE + N AVIYLVDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNNKINW L   QE I+IIET++RGARKG+GLVI+PKDYST++R
Subjt:  DEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKYR

Query:  Y
        Y
Subjt:  Y

Q553S5 Thioredoxin-like protein 4A homolog

2.5e-36

69.31

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Query:  DEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKYR
        D++LAS+AE +KN AVIY+VDITEVPD N+MYELYD    MFF+RNKHIM+DLGTGNNNKINWAL   Q+ I+IIETVY+GARKG+GLV +P+D+S +Y+
Subjt:  DEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKYR

Query:  Y
        +
Subjt:  Y

Q9FE62 Thioredoxin-like protein YLS8

2.5e-49

96.08

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Query:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY
        MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL   QEFI+IIETVYRGARKGRGLVIAPKDYSTKY
Subjt:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY

Query:  RY
        RY
Subjt:  RY

Arabidopsis top hits

e value

%identity

Alignment

AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP

2.6e-09

36.46

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Query:  DEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAP
        DE+LA     +  FA + LVD+ +  D     + +D    PST+ FFF   H+ +D GT ++ K   A    Q+FI+++E +YRGA KG+ +V  P
Subjt:  DEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAP

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP

1.8e-50

96.08

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Query:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY
        MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL   QEFI+IIETVYRGARKGRGLVIAPKDYSTKY
Subjt:  MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL---QEFINIIETVYRGARKGRGLVIAPKDYSTKY

Query:  RY
        RY
Subjt:  RY

Sequences

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CDS sequence

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ATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATCAAGAACTTTGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGA
TCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCCCTGCAAGAGTTCATCAATATCATTG
AAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA

mRNA sequence

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Protein sequence

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MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

CmoCh00G000770 (gene) of Cucurbita moschata (Rifu) v1 genome