CuGenDBv2

Gene ID	CmoCh00G001020
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic
Genome location	Cmo_Chr00:19002780..19003840
RNA-Seq Expression	CmoCh00G001020
Synteny	CmoCh00G001020
Gene Ontology terms	GO:0009536 - plastid (cellular component) GO:0016020 - membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function)
InterPro domains	IPR001457 - NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 IPR042106 - NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ

Homology

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GenBank top hits

e value

%identity

Alignment

ALO21929.1 NdhG [Cucurbita cordata]

2.2e-37

67.63

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Query:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFLVVLLGSGLILG+                              NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
Subjt:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT
        FLVCT           +TSWYGIIWTT+SNQILEPDLI+
Subjt:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT

ALO22204.1 NdhG [Cucurbita foetidissima]

1.1e-36

66.91

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Query:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFLVV LGSGLILG+                              NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
Subjt:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT
        FLVCT           +TSWYGIIWTTRSNQ LEPDLI+
Subjt:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT

YP_009317439.1 NADH dehydrogenase subunit 6 [Coccinia grandis]

2.4e-36

66.91

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Query:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFLVVLLGSGLILG+                              NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKD NLWTVGNGVT
Subjt:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT
        FLVCT           +TSWYGIIWTTRSNQILE DLI+
Subjt:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT

YP_009447504.1 NADH dehydrogenase subunit 6 [Cucurbita maxima]

9.7e-38

68.35

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Query:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFLVVLLGSGLILG+                              NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
Subjt:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT
        FLVCT           +TSWYGIIWTTRSNQILEPDLI+
Subjt:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT

YP_009752041.1 NADH dehydrogenase subunit G [Cionosicys macranthus]

2.8e-37

67.63

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Query:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFLVVLLGSGLILG+                              NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKD NLWTVGNGVT
Subjt:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT
        FLVCT           +TSWYGIIWTTRSNQILEPDLI+
Subjt:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT

TrEMBL top hits

e value

%identity

Alignment

A0A0S2IDF6 NdhG

4.7e-38

68.35

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Query:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFLVVLLGSGLILG+                              NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
Subjt:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT
        FLVCT           +TSWYGIIWTTRSNQILEPDLI+
Subjt:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT

A0A0S2IG41 NdhG

4.7e-38

68.35

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Query:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFLVVLLGSGLILG+                              NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
Subjt:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT
        FLVCT           +TSWYGIIWTTRSNQILEPDLI+
Subjt:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT

A0A0S2IGB7 NADH dehydrogenase subunit 6

4.7e-38

68.35

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Query:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFLVVLLGSGLILG+                              NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
Subjt:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT
        FLVCT           +TSWYGIIWTTRSNQILEPDLI+
Subjt:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT

A0A0S2IGP3 NdhG

4.7e-38

68.35

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Query:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFLVVLLGSGLILG+                              NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
Subjt:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT
        FLVCT           +TSWYGIIWTTRSNQILEPDLI+
Subjt:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT

A0A2H4T242 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

4.7e-38

68.35

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Query:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFLVVLLGSGLILG+                              NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
Subjt:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT
        FLVCT           +TSWYGIIWTTRSNQILEPDLI+
Subjt:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT

SwissProt top hits

e value

%identity

Alignment

Q09WW5 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

1.2e-33

58.99

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Query:  MDLPGPIHDFLVVLLGSGLILG------------------------------TNAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFL+V LG GLILG                              +N+ FVAAAQLLIYVGAINVLIIFAVMFM GSEY KD NLWTVGNG T
Subjt:  MDLPGPIHDFLVVLLGSGLILG------------------------------TNAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVC-----------TNTSWYGIIWTTRSNQILEPDLIT
         L+C           T+TSWYGIIWTTRSNQI+E DLI+
Subjt:  FLVC-----------TNTSWYGIIWTTRSNQILEPDLIT

Q0ZIW5 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

4.0e-34

59.71

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Query:  MDLPGPIHDFLVVLLGSGLILG------------------------------TNAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFL+V LGSGLILG                              +N+ FVAAAQLLIYVGAINVLIIFAVMFM GSEY KD NLWTVG+GVT
Subjt:  MDLPGPIHDFLVVLLGSGLILG------------------------------TNAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT
         +VCT           +TSWYGIIWTTRSNQI+E DLI+
Subjt:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT

Q2L958 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

2.3e-34

58.99

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Query:  MDLPGPIHDFLVVLLGSGLILG------------------------------TNAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFL+V LGSGLILG                              +N+ FVAAAQLLIYVGAINVLI+FAVMFM GSEY KD NLWT+GNG+T
Subjt:  MDLPGPIHDFLVVLLGSGLILG------------------------------TNAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT
         LVCT           +TSWYGIIWTTRSNQI+E DLI+
Subjt:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT

Q2QD38 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

3.1e-39

66.91

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Query:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFLVVLLGSGLILG+                              NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKD NLWTVGNGVT
Subjt:  MDLPGPIHDFLVVLLGSGLILGT------------------------------NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT
        FLVCT           +TSWYGIIWTTRSNQILE DLI+
Subjt:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT

Q49KU5 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

5.2e-34

58.7

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Query:  MDLPGPIHDFLVVLLGSGLILG------------------------------TNAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFL+V LGSGLILG                              +N+ FVAAAQLLIYVGAIN+LI+FAVMFM GSEY KDLNLWTVG+G+T
Subjt:  MDLPGPIHDFLVVLLGSGLILG------------------------------TNAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLI
         LVCT           +TSWYGIIWTT+SNQI+E DLI
Subjt:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLI

Arabidopsis top hits

e value

%identity

Alignment

ATCG01070.1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L

1.9e-07

83.33

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Query:  LITIAAAEAASGPAIVSSIYRNRKSTRINQSNLLNK
        +I IAAAEAA G AIVSSIYRNRKS RINQS LLNK
Subjt:  LITIAAAEAASGPAIVSSIYRNRKSTRINQSNLLNK

ATCG01080.1 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6

1.2e-33

56.12

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Query:  MDLPGPIHDFLVVLLGSGLILG------------------------------TNAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT
        MDLPGPIHDFL+V LGSGL++G                              +N+ FVAAAQLLIYVGAINVLIIFAVMFM  SEYS D NLWT+GNG+T
Subjt:  MDLPGPIHDFLVVLLGSGLILG------------------------------TNAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVT

Query:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT
         LVCT           +TSWYG+IWTT+ NQILE DLI+
Subjt:  FLVCT-----------NTSWYGIIWTTRSNQILEPDLIT

Sequences

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CDS sequence

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ATGGATTTGCCTGGACCGATACATGATTTTCTTGTAGTCTTGTTGGGATCAGGTCTTATTTTAGGAACAAACGCCCAGTTTGTAGCTGCGGCCCAACTCCTTATTTACGT
GGGAGCTATAAATGTTTTAATCATATTTGCTGTGATGTTCATGAAGGGTTCAGAATATTCCAAAGATTTGAATCTTTGGACCGTTGGGAATGGAGTTACTTTTCTGGTTT
GTACAAATACGTCATGGTATGGGATTATTTGGACTACAAGATCAAACCAGATTCTAGAGCCAGATTTAATAACTATTGCAGCGGCTGAAGCAGCTAGTGGCCCAGCTATT
GTTTCGTCAATTTATCGTAACAGAAAATCAACTCGTATCAATCAATCGAATTTGTTGAATAAGTAG

mRNA sequence

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Protein sequence

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MDLPGPIHDFLVVLLGSGLILGTNAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTNTSWYGIIWTTRSNQILEPDLITIAAAEAASGPAI
VSSIYRNRKSTRINQSNLLNK

CmoCh00G001020 (gene) of Cucurbita moschata (Rifu) v1 genome