CuGenDBv2

Gene ID	CmoCh00G001160
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Genome location	Cmo_Chr00:20735337..20735801
RNA-Seq Expression	CmoCh00G001160
Synteny	CmoCh00G001160
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0015074 - DNA integration (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008097 - 5S rRNA binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

CAN73071.1 hypothetical protein VITISV_032383 [Vitis vinifera]

2.1e-63

79.87

Show/hide

Query:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ
        +VPPPRFEPETS+TL+ KYLAW+AADQRLLCLLLSS+TEEA+AVVVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQ
Subjt:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ

Query:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF
        L+AIGRPVED DKVHWF RGLG +FS+FSTAQ++LTP+P F DLVSK ESFELF
Subjt:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF

RVW33283.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

7.1e-64

80.52

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Query:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ
        +VPPPRFEPETS+TL+ KYLAW+AADQRLLCLLLS +TEEA+AVVVGLSTAR+V LALE  FNHHSKA ELRLKDDLQLMK G KPVA YAR FK +C+Q
Subjt:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ

Query:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF
        L+AIGRPVED DKVHWFLRGLGT+FS+FSTAQ++LTP+P F DLVSK ESFELF
Subjt:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF

RVW45095.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

4.2e-64

80.52

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Query:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ
        +VPPPRFEPETS+TL+ KYLAW+AADQRLLCLLLSS+TEEA+ VVVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQ
Subjt:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ

Query:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF
        L+AIGRPVED DKVHWFLRGLGT+FS+FSTAQ++LTP+P F DLVSK ESFELF
Subjt:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF

RVW62468.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

2.1e-63

79.87

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Query:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ
        +VPPPRFEPETS+TL+ KYLAW+AADQRLLCLLLSS+TEEA+AVVVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQ
Subjt:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ

Query:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF
         +AIGRPVED DKVHWFLRGL T+FS+FSTAQ++LTP+P F DLVSK ESFELF
Subjt:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF

XP_019082043.1 PREDICTED: uncharacterized protein LOC109124338 [Vitis vinifera]

2.1e-63

79.87

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Query:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ
        +VPPPRFEPETS+TL+ KYLAW+AADQRLLCLLLSS+TEEA+AVVVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQ
Subjt:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ

Query:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF
        L+AIGRPVED DKVHWF RGLG +FS+FSTAQ++LTP+P F DLVSK ESFELF
Subjt:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF

TrEMBL top hits

e value

%identity

Alignment

A0A438DCU0 Retrovirus-related Pol polyprotein from transposon RE1

3.4e-64

80.52

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Query:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ
        +VPPPRFEPETS+TL+ KYLAW+AADQRLLCLLLS +TEEA+AVVVGLSTAR+V LALE  FNHHSKA ELRLKDDLQLMK G KPVA YAR FK +C+Q
Subjt:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ

Query:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF
        L+AIGRPVED DKVHWFLRGLGT+FS+FSTAQ++LTP+P F DLVSK ESFELF
Subjt:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF

A0A438EBA0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.0e-64

80.52

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Query:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ
        +VPPPRFEPETS+TL+ KYLAW+AADQRLLCLLLSS+TEEA+ VVVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQ
Subjt:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ

Query:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF
        L+AIGRPVED DKVHWFLRGLGT+FS+FSTAQ++LTP+P F DLVSK ESFELF
Subjt:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF

A0A438FR86 Retrovirus-related Pol polyprotein from transposon RE1

1.0e-63

79.87

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Query:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ
        +VPPPRFEPETS+TL+ KYLAW+AADQRLLCLLLSS+TEEA+AVVVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQ
Subjt:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ

Query:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF
         +AIGRPVED DKVHWFLRGL T+FS+FSTAQ++LTP+P F DLVSK ESFELF
Subjt:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF

A0A438IYJ9 Retrovirus-related Pol polyprotein from transposon RE1

1.3e-63

79.87

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Query:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ
        +VPPPRFEPETS+TL+ KYLAW+AA+QRLLCLLLSS+TEEA+AVVVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQ
Subjt:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ

Query:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF
        L+AIGRPVED DKVHWFLRGLG +FS+FSTAQ++LTP+P F DLVSK ESFELF
Subjt:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF

A5C5R8 Integrase catalytic domain-containing protein

1.0e-63

79.87

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Query:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ
        +VPPPRFEPETS+TL+ KYLAW+AADQRLLCLLLSS+TEEA+AVVVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQ
Subjt:  MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQ

Query:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF
        L+AIGRPVED DKVHWF RGLG +FS+FSTAQ++LTP+P F DLVSK ESFELF
Subjt:  LYAIGRPVEDIDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTTCCACCACCTCGCTTTGAACCAGAAACCTCCTCAACACTCAACCACAAATATTTGGCGTGGAGAGCAGCCGATCAACGACTTCTTTGTCTCTTGCTCTCCTCTGT
CACTGAGGAAGCCATGGCTGTTGTTGTTGGTCTCTCTACTGCACGTGATGTTCGGCTTGCGTTGGAAACTGCGTTCAACCATCATTCGAAAGCTTGTGAACTGAGACTCA
AGGATGACTTGCAATTGATGAAACATGGCATCAAACCTGTTGCTGCGTATGCCCGTGCCTTCAAAAAAATTTGTGACCAACTTTATGCCATTGGCAGACCCGTCGAGGAT
ATTGATAAAGTGCACTGGTTCCTTCGTGGACTTGGCACAGAATTTTCAACTTTTTCTACTGCTCAGATAGCTCTCACACCTATCCCTTGTTTTGTAGATTTAGTCTCTAA
AGTTGAAAGTTTTGAGTTGTTCTAG

mRNA sequence

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Protein sequence

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MVPPPRFEPETSSTLNHKYLAWRAADQRLLCLLLSSVTEEAMAVVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVED
IDKVHWFLRGLGTEFSTFSTAQIALTPIPCFVDLVSKVESFELF

CmoCh00G001160 (gene) of Cucurbita moschata (Rifu) v1 genome