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CmoCh01G000040 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G000040
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionYlmG homolog protein 1-2, chloroplastic
Genome locationCmo_Chr01:14160..14455
RNA-Seq ExpressionCmoCh01G000040
SyntenyCmoCh01G000040
Gene Ontology termsGO:0010020 - chloroplast fission (biological process)
GO:0090143 - nucleoid organization (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR003425 - CCB3/YggT


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAM64721.1 unknown [Arabidopsis thaliana]4.9e-1490.91Show/hide
Query:  GHPLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG
        G PLSAIRDLCDPYLNLFRNIIPP+FDTLDV+PLLAFAVLGT G
Subjt:  GHPLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG

KAB5569801.1 hypothetical protein DKX38_003594 [Salix brachista]1.8e-1395.24Show/hide
Query:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG
        PLSAIRDLCDPYLNLFRNIIPPIFDTLDV+PLLAFAVLGT G
Subjt:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG

TYG45319.1 hypothetical protein ES288_D11G164100v1 [Gossypium darwinii]1.8e-1395.24Show/hide
Query:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG
        PLSAIRDLCDPYLNLFRNIIPPIFDTLDV+PLLAFAVLGT G
Subjt:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG

XP_010054052.2 ylmG homolog protein 1-2, chloroplastic [Eucalyptus grandis]3.7e-1493.18Show/hide
Query:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQGQF
        PLSAIRDLCDPYLNLFRNIIPPIFDTLDV+PLLAFAVLGT G F
Subjt:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQGQF

XP_012833570.1 PREDICTED: uncharacterized protein LOC105954446 [Erythranthe guttata]1.8e-1395.24Show/hide
Query:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG
        PLSAIRDLCDPYLNLFRNIIPPIFDTLDV+PLLAFAVLGT G
Subjt:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG

TrEMBL top hitse value%identityAlignment
A0A178VH23 YLMG1-19.0e-1495.24Show/hide
Query:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG
        PLSAIRDLCDPYLNLFRNIIPPIFDTLDV+PLLAFAVLGT G
Subjt:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG

A0A1U7YL54 uncharacterized protein LOC1042456299.0e-1495.24Show/hide
Query:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG
        PLSAIRDLCDPYLNLFRNIIPPIFDTLDV+PLLAFAVLGT G
Subjt:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG

A0A2P5Y6R8 Uncharacterized protein9.0e-1495.24Show/hide
Query:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG
        PLSAIRDLCDPYLNLFRNIIPPIFDTLDV+PLLAFAVLGT G
Subjt:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG

A0A6J1J015 ylmG homolog protein 1-2, chloroplastic-like9.0e-1495.24Show/hide
Query:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG
        PLSAIRDLCDPYLNLFRNIIPPIFDTLDV+PLLAFAVLGT G
Subjt:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG

M5WTX4 Uncharacterized protein9.0e-1495.24Show/hide
Query:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG
        PLSAIRDLCDPYLNLFRNIIPPIFDTLDV+PLLAFAVLGT G
Subjt:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG

SwissProt top hitse value%identityAlignment
Q9C595 YlmG homolog protein 2, chloroplastic4.7e-0458.97Show/hide
Query:  HPLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVL
        +PLS    LCDPYLN+FR  IPP+   LD++P+LAF VL
Subjt:  HPLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVL

Q9SRS3 YlmG homolog protein 1-1, chloroplastic2.4e-1695.24Show/hide
Query:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG
        PLSAIRDLCDPYLNLFRNIIPPIFDTLDV+PLLAFAVLGT G
Subjt:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG

Q9SUE0 YlmG homolog protein 1-2, chloroplastic3.2e-1692.86Show/hide
Query:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG
        PLSAIRDLCDPYLNLFRNIIPP+FDTLDV+PLLAFAVLGT G
Subjt:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG

Arabidopsis top hitse value%identityAlignment
AT3G07430.1 YGGT family protein1.7e-1795.24Show/hide
Query:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG
        PLSAIRDLCDPYLNLFRNIIPPIFDTLDV+PLLAFAVLGT G
Subjt:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG

AT4G27990.1 YGGT family protein2.2e-1792.86Show/hide
Query:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG
        PLSAIRDLCDPYLNLFRNIIPP+FDTLDV+PLLAFAVLGT G
Subjt:  PLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQG

AT5G21920.1 YGGT family protein3.4e-0558.97Show/hide
Query:  HPLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVL
        +PLS    LCDPYLN+FR  IPP+   LD++P+LAF VL
Subjt:  HPLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVL

AT5G21920.2 YGGT family protein3.4e-0558.97Show/hide
Query:  HPLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVL
        +PLS    LCDPYLN+FR  IPP+   LD++P+LAF VL
Subjt:  HPLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCCTTGTCCTGGGCTCGGTCCGTTCCAGGCGGCCGGCTCCCTGTTCTGGGACCGCCCCAGCAGATATCTCCACACGCCTTTGACGGTGGTGGCTGCAGGGATGG
CCAAGTGGGGCACCCACTCTCTGCAATTCGTGATCTCTGCGATCCATACTTGAACCTGTTCCGGAATATAATTCCTCCAATATTCGATACCCTGGATGTTACCCCGCTTT
TGGCTTTTGCGGTTCTGGGCACCCAGGGTCAATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCCTTGTCCTGGGCTCGGTCCGTTCCAGGCGGCCGGCTCCCTGTTCTGGGACCGCCCCAGCAGATATCTCCACACGCCTTTGACGGTGGTGGCTGCAGGGATGG
CCAAGTGGGGCACCCACTCTCTGCAATTCGTGATCTCTGCGATCCATACTTGAACCTGTTCCGGAATATAATTCCTCCAATATTCGATACCCTGGATGTTACCCCGCTTT
TGGCTTTTGCGGTTCTGGGCACCCAGGGTCAATTCTGA
Protein sequenceShow/hide protein sequence
MASLSWARSVPGGRLPVLGPPQQISPHAFDGGGCRDGQVGHPLSAIRDLCDPYLNLFRNIIPPIFDTLDVTPLLAFAVLGTQGQF