; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G000400 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G000400
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationCmo_Chr01:130620..131177
RNA-Seq ExpressionCmoCh01G000400
SyntenyCmoCh01G000400
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606691.1 hypothetical protein SDJN03_00033, partial [Cucurbita argyrosperma subsp. sororia]4.7e-7090.55Show/hide
Query:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQ--------SPPPPSPS--------PNFVPPPPPA
        MER FSTLIFVISGFAFSILSLLVESQARDGAIPSSS  PPPPPPSPPPPSPPPPPPPPPPLSPPQ        SPPPPSPS        PNFVPPPPPA
Subjt:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQ--------SPPPPSPS--------PNFVPPPPPA

Query:  SSSPPPPIFPPPPSLPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGF
        SSSPPPPIFPPPPSLPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGF
Subjt:  SSSPPPPIFPPPPSLPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGF

Query:  S
        S
Subjt:  S

KAG7036411.1 hypothetical protein SDJN02_00028, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-6491.58Show/hide
Query:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQ----SPPPPSPS--------PNFVPPPPPASSSP
        MER FSTLIFVISGFAFSILSLLVESQARDGAIPSSS  PPPPPPSPPPPSPPPPPPPPPPLSPPQ    SPPPPSPS        PNFVPPPPPASSSP
Subjt:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQ----SPPPPSPS--------PNFVPPPPPASSSP

Query:  PPPIFPPPPSLPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFK
        PPPIFPPPPSLPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLL FK
Subjt:  PPPIFPPPPSLPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFK

XP_022948467.1 leucine-rich repeat extensin-like protein 3 [Cucurbita moschata]1.4e-77100Show/hide
Query:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQSPPPPSPSPNFVPPPPPASSSPPPPIFPPPPSLP
        MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQSPPPPSPSPNFVPPPPPASSSPPPPIFPPPPSLP
Subjt:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQSPPPPSPSPNFVPPPPPASSSPPPPIFPPPPSLP

Query:  SLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGFS
        SLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGFS
Subjt:  SLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGFS

XP_022998566.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]6.1e-6285.22Show/hide
Query:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPP-----PPPLSPPQSPP------PPSPSPN-------FVPPPP
        MERP ST IFVISGFAFSILSLLVESQARDGAI SSS  PPPPPPSPPPPSPPPPPPP      PPLSPPQSPP      PP PSPN       FVPPPP
Subjt:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPP-----PPPLSPPQSPP------PPSPSPN-------FVPPPP

Query:  PASSSPPPPIFPPPPSLPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYD
        PAS S PPPIFPPPPS PSLQHRSTP PPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKD+YD
Subjt:  PASSSPPPPIFPPPPSLPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYD

Query:  GFS
        GFS
Subjt:  GFS

XP_023523257.1 leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]9.4e-7194.27Show/hide
Query:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQSPPPPSPS------PNFVPPPPPASSSPPPPIFP
        MERPFSTLIFVISGFAFSILSLLVESQARDGAI SSS  PPPPPPSPPPPSPPPPPPPPPPLSPPQSPPPPSP+      PNFVPPPPPASSSPPPPIFP
Subjt:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQSPPPPSPS------PNFVPPPPPASSSPPPPIFP

Query:  PPPSLPSLQHRSTPPP-PPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGFS
        PPPSLPSLQHRSTPPP PPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGFS
Subjt:  PPPSLPSLQHRSTPPP-PPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGFS

TrEMBL top hitse value%identityAlignment
A0A0A0LC75 Uncharacterized protein2.4e-3264.55Show/hide
Query:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPP----PPPPPPSPPPPSPPPPPPPPPPLSPPQSPPPPSPSPNFVPPPPPASSSPPPPIFPPP
        MERP +TLIFVI+GFAFS+LSLLVESQ  DGA P+ SPP    PPP P  PPPP PPPPPPPPPP  PP +PPPPSPS              PPP  PPP
Subjt:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPP----PPPPPPSPPPPSPPPPPPPPPPLSPPQSPPPPSPSPNFVPPPPPASSSPPPPIFPPP

Query:  PSLPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGFS
        P  P  +HR  PPPP   +     K+PP   +N N++  +GSKRSLN GKKVGLFFVGIAAVLQICVVGFLVFKRRQLLR KDRY+GFS
Subjt:  PSLPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGFS

A0A1S3CKG6 leucine-rich repeat extensin-like protein 33.9e-3066.31Show/hide
Query:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPP-PPPPPPSPPPPSPPPPPPPPPPLSPPQ-SPPPPSPSPNFVPPPPPASSSPPPPIFPPPPS
        MERP +TLIFVISGFAFS+LSLLVESQ  D A P+ SPP P PPPPSP PP PP PPPPPPP  PP+   PPPSPS      PPP S SPPPP       
Subjt:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPP-PPPPPPSPPPPSPPPPPPPPPPLSPPQ-SPPPPSPSPNFVPPPPPASSSPPPPIFPPPPS

Query:  LPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGFS
         P    RS  PPPP+ +S +  KK P V   N + N + SKRSLN GKKVGLFFVGIAAVLQICVVGFLVFKRRQLLR KDRY+GFS
Subjt:  LPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGFS

A0A438K6Z4 Uncharacterized protein2.8e-2050.97Show/hide
Query:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPP---PPPPPPLSPPQSP----PPPSPSPNFVPPPPPASS---SPPP
        ME+PFSTL+FVI GF F I ++LV++Q++  + P+++PPPP PPP PPPP P PP   PPPP PLSPP  P    PPP PSP+  PPPPP+ S   SPPP
Subjt:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPP---PPPPPPLSPPQSP----PPPSPSPNFVPPPPPASS---SPPP

Query:  PIFPPPPSLPSLQHRSTPPPPPIPASSDANKKPPEVSRN--------------NNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLR
        P  PPPP  P      TPP PP P    + K     S+N              NN        + +N+GK +GL FVGIA +LQICVVGFL FKRRQLL+
Subjt:  PIFPPPPSLPSLQHRSTPPPPPIPASSDANKKPPEVSRN--------------NNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLR

Query:  FKDRYD
         KDRY+
Subjt:  FKDRYD

A0A6J1G9A4 leucine-rich repeat extensin-like protein 36.6e-78100Show/hide
Query:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQSPPPPSPSPNFVPPPPPASSSPPPPIFPPPPSLP
        MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQSPPPPSPSPNFVPPPPPASSSPPPPIFPPPPSLP
Subjt:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQSPPPPSPSPNFVPPPPPASSSPPPPIFPPPPSLP

Query:  SLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGFS
        SLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGFS
Subjt:  SLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGFS

A0A6J1KAI1 leucine-rich repeat extensin-like protein 33.0e-6285.22Show/hide
Query:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPP-----PPPLSPPQSPP------PPSPSPN-------FVPPPP
        MERP ST IFVISGFAFSILSLLVESQARDGAI SSS  PPPPPPSPPPPSPPPPPPP      PPLSPPQSPP      PP PSPN       FVPPPP
Subjt:  MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPP-----PPPLSPPQSPP------PPSPSPN-------FVPPPP

Query:  PASSSPPPPIFPPPPSLPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYD
        PAS S PPPIFPPPPS PSLQHRSTP PPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKD+YD
Subjt:  PASSSPPPPIFPPPPSLPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYD

Query:  GFS
        GFS
Subjt:  GFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54215.1 proline-rich family protein1.9e-0545.76Show/hide
Query:  STLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQS---PPPPSPSPNFVPPPPPASSSPPPPIFPPPPSLPSL
        S  +F+++ F      LLV+SQ  D  +   SPPPPPPPP PPPP PPPPPPPPP ++       PPPP P  + + P     SSPPPP   PPP     
Subjt:  STLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQS---PPPPSPSPNFVPPPPPASSSPPPPIFPPPPSLPSL

Query:  QHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKD
          RS PPP P   +      PP  S        +  +  LN GK VGL FVG+ A+LQ+ VV FLVFKR+QLL  KD
Subjt:  QHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACGCCCATTCTCTACGTTGATCTTCGTCATTTCGGGGTTTGCTTTCAGTATTTTATCGCTTCTTGTTGAGTCTCAGGCTCGAGATGGAGCCATTCCCTCT
TCCTCGCCGCCTCCGCCTCCGCCTCCTCCATCTCCACCACCTCCATCTCCGCCACCGCCACCACCACCGCCACCACCGCTATCACCACCGCAATCACCACCGCCC
CCGTCCCCGTCCCCAAACTTCGTCCCGCCTCCACCGCCTGCATCTTCATCTCCACCTCCGCCAATATTTCCCCCACCGCCTTCTCTGCCGAGTCTCCAGCATCGT
TCTACTCCGCCGCCGCCGCCTATTCCTGCATCCTCCGACGCGAATAAAAAACCACCCGAAGTGAGTCGGAATAACAACTCCCACAATATTGAAGGGTCGAAGAGA
AGTCTCAATATGGGGAAGAAAGTAGGGCTATTCTTTGTTGGTATTGCGGCAGTACTTCAAATCTGCGTGGTGGGATTTTTGGTATTCAAGAGACGGCAGCTCCTA
AGATTCAAGGACCGGTACGATGGTTTTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACGCCCATTCTCTACGTTGATCTTCGTCATTTCGGGGTTTGCTTTCAGTATTTTATCGCTTCTTGTTGAGTCTCAGGCTCGAGATGGAGCCATTCCCTCT
TCCTCGCCGCCTCCGCCTCCGCCTCCTCCATCTCCACCACCTCCATCTCCGCCACCGCCACCACCACCGCCACCACCGCTATCACCACCGCAATCACCACCGCCC
CCGTCCCCGTCCCCAAACTTCGTCCCGCCTCCACCGCCTGCATCTTCATCTCCACCTCCGCCAATATTTCCCCCACCGCCTTCTCTGCCGAGTCTCCAGCATCGT
TCTACTCCGCCGCCGCCGCCTATTCCTGCATCCTCCGACGCGAATAAAAAACCACCCGAAGTGAGTCGGAATAACAACTCCCACAATATTGAAGGGTCGAAGAGA
AGTCTCAATATGGGGAAGAAAGTAGGGCTATTCTTTGTTGGTATTGCGGCAGTACTTCAAATCTGCGTGGTGGGATTTTTGGTATTCAAGAGACGGCAGCTCCTA
AGATTCAAGGACCGGTACGATGGTTTTTCTTGA
Protein sequenceShow/hide protein sequence
MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQSPPPPSPSPNFVPPPPPASSSPPPPIFPPPPSLPSLQHR
STPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDRYDGFS