CuGenDBv2

Gene ID	CmoCh01G000520
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L34
Genome location	Cmo_Chr01:183575..185944
RNA-Seq Expression	CmoCh01G000520
Synteny	CmoCh01G000520
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000271 - Ribosomal protein L34 IPR020939 - Ribosomal protein L34, conserved site

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6606703.1 hypothetical protein SDJN03_00045, partial [Cucurbita argyrosperma subsp. sororia]

5.5e-74

98.64

Show/hide

Query:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM
        MASTLLVRTGNSLINRLRLNSAHQTSRIWY QTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEP+
Subjt:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

KAG7036420.1 Polyadenylate-binding protein-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.7e-73

97.96

Show/hide

Query:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM
        MASTLLVRTGNSLINRLRLNSAHQTSRIWY QTLSHGH AEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDG+NSTTQEPM
Subjt:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

XP_022948939.1 uncharacterized protein LOC111452439 [Cucurbita moschata]

5.0e-75

100

Show/hide

Query:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM
        MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM
Subjt:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

XP_022997833.1 uncharacterized protein LOC111492674 [Cucurbita maxima]

3.0e-72

96.6

Show/hide

Query:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM
        MASTLLVRTGNSLINRLRLNS HQTSRIWY QTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTE+VRKLESEGIFFPFGLPSLRFFLPDGD S+TQEPM
Subjt:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

XP_023523687.1 uncharacterized protein LOC111787851 [Cucurbita pepo subsp. pepo]

1.0e-72

97.28

Show/hide

Query:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM
        MASTLLVRTGNSLINRLRLNSAHQTSRIW  QTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNS+TQEPM
Subjt:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        +LFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIB6 Uncharacterized protein

3.0e-65

87.76

Show/hide

Query:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM
        MAS LL+RTG+SL+NRLRL+SAHQ +RIW SQ LSHGHG EVTPMLFPS+SKHQTA  LQQNDTES+R+L+SEGIFFPFGLPSLRFFLPDGD S+TQEPM
Subjt:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A0A1S3BHV7 uncharacterized protein LOC103490028

1.1e-64

87.07

Show/hide

Query:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM
        MAS LL+RTGNS +NRLRL+SAHQ +RIW SQ LSHGHG EVTPMLFPS+SKHQ A  LQQNDTES+R+L+SEGIFFPFGLPSLRFFLPDGD S+TQEPM
Subjt:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A0A6J1GBE4 uncharacterized protein LOC111452439

2.4e-75

100

Show/hide

Query:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM
        MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM
Subjt:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A0A6J1GTQ0 uncharacterized protein LOC111457406 isoform X2

1.3e-65

87.76

Show/hide

Query:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM
        MAS LL+RTGNSL+NRLRL+S HQ + IW SQ+LS GHG +VTPMLFPS+SKHQTA HLQQNDTES+RKLESEGIFFPFGLPSLRFFLPDGD S+TQEPM
Subjt:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A0A6J1KF33 uncharacterized protein LOC111492674

1.5e-72

96.6

Show/hide

Query:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM
        MASTLLVRTGNSLINRLRLNS HQTSRIWY QTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTE+VRKLESEGIFFPFGLPSLRFFLPDGD S+TQEPM
Subjt:  MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

SwissProt top hits

e value

%identity

Alignment

A3QJT4 50S ribosomal protein L34

2.9e-09

74.42

Show/hide

Query:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Subjt:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A8HAI3 50S ribosomal protein L34

2.9e-09

74.42

Show/hide

Query:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Subjt:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

B0TQH4 50S ribosomal protein L34

2.9e-09

74.42

Show/hide

Query:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Subjt:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

Q15MS4 50S ribosomal protein L34

2.9e-09

74.42

Show/hide

Query:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        KRTFQPS ++RKR+HGF AR ATK GRKVIA R AKGR+R+TA
Subjt:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

Q47U32 50S ribosomal protein L34

2.9e-09

74.42

Show/hide

Query:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        KRTFQPS ++RKRNHGF AR ATK GR VIARR AKGR+R++A
Subjt:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

Arabidopsis top hits

e value

%identity

Alignment

AT3G13882.1 Ribosomal protein L34

1.1e-35

55.63

Show/hide

Query:  MASTLLVRTGNSLINRL----RLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTT
        MA+  L+R+G SL+NR       N      R  +      G   E+ P  FPSLS  Q++   + NDT S+++L   G  +P GLPSL FFLP+ D S+ 
Subjt:  MASTLLVRTGNSLINRL----RLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTT

Query:  QEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
         EP+LLFPKRTFQPSTIRRKRNHGFFARKATKGGR+VIARRIAKGR R+TA
Subjt:  QEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

AT3G13882.2 Ribosomal protein L34

2.2e-28

47.4

Show/hide

Query:  GAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLP--------DGDNST-----------------------------------
        G E+ P  FPSLS  Q++   + NDT S+++L   G  +P GLPSL FFLP        D   S+                                   
Subjt:  GAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLP--------DGDNST-----------------------------------

Query:  --TQEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
          + EP+LLFPKRTFQPSTIRRKRNHGFFARKATKGGR+VIARRIAKGR R+TA
Subjt:  --TQEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGTCCACACTTCTGGTTCGGACGGGAAATTCCTTGATCAATCGGTTGCGATTGAATTCCGCGCATCAGACTAGCAGGATTTGGTATTCCCAAACTTTGTCT
CATGGCCACGGCGCTGAAGTCACTCCGATGCTGTTTCCTTCACTCTCTAAGCATCAGACTGCTCAGCATTTGCAGCAGAATGATACCGAATCGGTGAGGAAGCTC
GAATCTGAAGGCATCTTCTTCCCATTTGGTCTTCCTTCGCTCCGGTTCTTCTTACCCGATGGAGATAATTCTACCACTCAAGAACCAATGCTCTTATTTCCTAAA
AGGACTTTTCAACCTAGCACCATCAGGCGGAAGAGGAATCATGGATTTTTTGCCCGCAAAGCAACCAAGGGTGGGCGGAAGGTGATTGCTCGAAGGATCGCGAAG
GGGCGATCAAGAATAACAGCATAA

mRNA sequence

Show/hide mRNA sequence

TTTGCATATTTAGCCACTAAATTTATAAATATGACCTTTAATTTTTTGTCGATTTAGAAAATAAACCGAATCGAAGATTTCAGAGAAAGCCGAACCTTGACCGGA
CCAGCACTTTTTAAAAACCAAGAGTGGAAGAAGAATCCTCTTCTGATCATCTCTAGGGTTTATTCAGCTCCTTCATTTGGTAATGGCGTCCACACTTCTGGTTCG
GACGGGAAATTCCTTGATCAATCGGTTGCGATTGAATTCCGCGCATCAGACTAGCAGGATTTGGTATTCCCAAACTTTGTCTCATGGCCACGGCGCTGAAGTCAC
TCCGATGCTGTTTCCTTCACTCTCTAAGCATCAGACTGCTCAGCATTTGCAGCAGAATGATACCGAATCGGTGAGGAAGCTCGAATCTGAAGGCATCTTCTTCCC
ATTTGGTCTTCCTTCGCTCCGGTTCTTCTTACCCGATGGAGATAATTCTACCACTCAAGAACCAATGCTCTTATTTCCTAAAAGGACTTTTCAACCTAGCACCAT
CAGGCGGAAGAGGAATCATGGATTTTTTGCCCGCAAAGCAACCAAGGGTGGGCGGAAGGTGATTGCTCGAAGGATCGCGAAGGGGCGATCAAGAATAACAGCATA
ATATGCGTCTCAAAGTCGGGTGTAGTTGAATTAGCCTGCCAACATCAACATCCATGTTTTGTAGGTTATGCTACTTTTTTCTATTAACTTCAGACAAGCTACTCA
CAGTCTGTATAAACCTCTCTGTTGTTATGATTATCGTGCATTAAAAAACCAGTTTTCCTTTTATTTTAAATTTTTTTCATTGCTTGGCTATGAAACATGGTAATT
GATTTAAGTCATTGTAAGACTAAAATCATTTAGGTCTCATTCAATAAAGATTTTATTTTTAGTAATTCTTGAAAATTATAGATAGGAGGGTGTAAGTACCCGACA
AATTTTCTTTGTTTTGCATGTCACCTCTTTGTCTTGCATGTCACCTCTAATCGTGC

Protein sequence

Show/hide protein sequence

MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQQNDTESVRKLESEGIFFPFGLPSLRFFLPDGDNSTTQEPMLLFPK
RTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

CmoCh01G000520 (gene) of Cucurbita moschata (Rifu) v1 genome