; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G000830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G000830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionMediator of RNA polymerase II transcription subunit 6
Genome locationCmo_Chr01:381833..384479
RNA-Seq ExpressionCmoCh01G000830
SyntenyCmoCh01G000830
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0070847 - core mediator complex (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR007018 - Mediator complex, subunit Med6
IPR016820 - Mediator complex, subunit Med6, metazoa/plant
IPR038566 - Mediator complex, subunit Med6 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606737.1 Mediator of RNA polymerase II transcription subunit 6, partial [Cucurbita argyrosperma subsp. sororia]6.0e-13798.8Show/hide
Query:  MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF
        MATPPPPGIGNFEGGPP AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF
Subjt:  MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF

Query:  VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRKLP
        VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENE+EEVKPAK TIDFKEVKRVDRILASLQRKLP
Subjt:  VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRKLP

Query:  PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
        PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
Subjt:  PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF

XP_022148297.1 mediator of RNA polymerase II transcription subunit 6 [Momordica charantia]4.2e-13093.31Show/hide
Query:  MATPP----PPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPP    PPGI NFEGGPP AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVME
Subjt:  MATPP----PPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP KETI+FKEVKRVD ILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQ

Query:  RKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGYVPAP +E EKGPE+Q  ELQQP+ADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF

XP_022948318.1 mediator of RNA polymerase II transcription subunit 6 [Cucurbita moschata]6.4e-139100Show/hide
Query:  MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF
        MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF
Subjt:  MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF

Query:  VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRKLP
        VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRKLP
Subjt:  VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRKLP

Query:  PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
        PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
Subjt:  PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF

XP_022998637.1 mediator of RNA polymerase II transcription subunit 6 [Cucurbita maxima]5.1e-13698.4Show/hide
Query:  MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF
        MATPPPPGIGNFEGGPP AAPQ PGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF
Subjt:  MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF

Query:  VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRKLP
        VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE+VKPAK TIDFKEVKRVDRILASLQRKLP
Subjt:  VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRKLP

Query:  PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
        PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
Subjt:  PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF

XP_023524903.1 mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo]2.7e-13799.2Show/hide
Query:  MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF
        MATPPPPGIGNFEGGPP AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF
Subjt:  MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF

Query:  VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRKLP
        VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAK TIDFKEVKRVDRILASLQRKLP
Subjt:  VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRKLP

Query:  PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
        PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
Subjt:  PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF

TrEMBL top hitse value%identityAlignment
A0A1S3BHR9 Mediator of RNA polymerase II transcription subunit 62.6e-13092.94Show/hide
Query:  MATPP-----PPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
        MATPP     PPG GNFEGGP  AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
Subjt:  MATPP-----PPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETI+FKEVKRVD ILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASL

Query:  QRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGY PAP ++ EKGPE+QQGE QQP+ADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF

A0A5D3CDR8 Mediator of RNA polymerase II transcription subunit 62.6e-13092.94Show/hide
Query:  MATPP-----PPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
        MATPP     PPG GNFEGGP  AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
Subjt:  MATPP-----PPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETI+FKEVKRVD ILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASL

Query:  QRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGY PAP ++ EKGPE+QQGE QQP+ADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF

A0A6J1D4P7 Mediator of RNA polymerase II transcription subunit 62.0e-13093.31Show/hide
Query:  MATPP----PPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPP    PPGI NFEGGPP AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVME
Subjt:  MATPP----PPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP KETI+FKEVKRVD ILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQ

Query:  RKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGYVPAP +E EKGPE+Q  ELQQP+ADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF

A0A6J1G911 Mediator of RNA polymerase II transcription subunit 63.1e-139100Show/hide
Query:  MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF
        MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF
Subjt:  MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF

Query:  VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRKLP
        VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRKLP
Subjt:  VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRKLP

Query:  PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
        PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
Subjt:  PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF

A0A6J1K8I9 Mediator of RNA polymerase II transcription subunit 62.5e-13698.4Show/hide
Query:  MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF
        MATPPPPGIGNFEGGPP AAPQ PGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF
Subjt:  MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF

Query:  VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRKLP
        VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE+VKPAK TIDFKEVKRVDRILASLQRKLP
Subjt:  VFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRKLP

Query:  PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
        PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
Subjt:  PAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF

SwissProt top hitse value%identityAlignment
F4IXJ7 Mediator of RNA polymerase II transcription subunit 65.9e-8763.31Show/hide
Query:  PPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
        PPL   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTP
Subjt:  PPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP

Query:  MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY------VDSENESEE
        MLTYYILDGSIYQAPQLC+VFAARVSR +Y ISKAFT A+SKLE I                                     G+       +++NE  E
Subjt:  MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY------VDSENESEE

Query:  VKPAKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
         KPA ET+D KE+KRVD IL SL RKL P PPPPPFPEGYV   A   ++   +Q GE Q P  DPIIDQGPAKRMKF
Subjt:  VKPAKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF

Q3SZY9 Mediator of RNA polymerase II transcription subunit 67.9e-2336.1Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M G+EY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVP
         IYQAP L +V  +RV  A++ I  AF  A S        GY        E ++VKP     +E     + +RVD +L  L++K PP        E  VP
Subjt:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVP

Query:  APAS--EAEKGPESQQGELQQPAADPIIDQG----PAKRMK
           +  EAE  PE+ + E ++ A +     G    P KRM+
Subjt:  APAS--EAEKGPESQQGELQQPAADPIIDQG----PAKRMK

Q54PN3 Putative mediator of RNA polymerase II transcription subunit 66.2e-2839.79Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSI
        D+T + +RD LWL  YPL+   +  YF+ S FYD  CNNEQL+M+    LDLS L  M G+EY L + +EP  F+  KQ R  P  V     YY+++G+I
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSI

Query:  YQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVK-PAKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPE
        YQAP+L  VF +RVS+++ ++S+AF + SS +      GY   +D  N+ E+ K  A      ++ KR+D+++ SL  K P    P   P+
Subjt:  YQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVK-PAKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPE

Q5RD94 Mediator of RNA polymerase II transcription subunit 62.3e-2235.66Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETIDFKEVKRVDRILASLQRKLPP-----APPPPPFP
         IYQAP L +V  +RV  A++ I  AF  A S        GY        E ++V+P     +E     + +RVD +L  L++K PP      P   P P
Subjt:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETIDFKEVKRVDRILASLQRKLPP-----APPPPPFP

Query:  EGYVPAPASEAEKGPES---QQGELQQPAADPIIDQG-PAKRMK
           V     EAE  PE+   ++ E  +     +  +G P KRM+
Subjt:  EGYVPAPASEAEKGPES---QQGELQQPAADPIIDQG-PAKRMK

Q921D4 Mediator of RNA polymerase II transcription subunit 66.0e-2335.68Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVP
         IYQAP L +V  +RV  A++ I  AF  A S        GY        E E+VKP     +E     + +RVD +L  L++K PP        E  VP
Subjt:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVP

Query:  APASEAEKGP-----ESQQGELQQPAADPIIDQG-PAKRMK
           ++ E  P     +S++ E  +     +  +G P KRM+
Subjt:  APASEAEKGP-----ESQQGELQQPAADPIIDQG-PAKRMK

Arabidopsis top hitse value%identityAlignment
AT3G21350.1 RNA polymerase transcriptional regulation mediator-related1.3e-9475.11Show/hide
Query:  PPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
        PPL   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTP
Subjt:  PPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP

Query:  MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--EVKPAKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYV
        MLTYYILDGSIYQAPQLC+VFAARVSR +Y ISKAFT A+SKLE I  VD+EN++E  E KPA ET+D KE+KRVD IL SL RKL P PPPPPFPEGYV
Subjt:  MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--EVKPAKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYV

Query:  PAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
           A   ++   +Q GE Q P  DPIIDQGPAKRMKF
Subjt:  PAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF

AT3G21350.2 RNA polymerase transcriptional regulation mediator-related4.2e-8863.31Show/hide
Query:  PPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
        PPL   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTP
Subjt:  PPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP

Query:  MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY------VDSENESEE
        MLTYYILDGSIYQAPQLC+VFAARVSR +Y ISKAFT A+SKLE I                                     G+       +++NE  E
Subjt:  MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY------VDSENESEE

Query:  VKPAKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF
         KPA ET+D KE+KRVD IL SL RKL P PPPPPFPEGYV   A   ++   +Q GE Q P  DPIIDQGPAKRMKF
Subjt:  VKPAKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTCCACCGCCACCGGGGATCGGGAATTTTGAGGGAGGACCACCGCTGGCAGCGCCTCAGCCGCCAGGCACGGACATGACTGGAATTTGCTTTAGAGACCAACT
CTGGCTCAATACTTACCCTCTCGATCGGAACCTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGACTTGTAACAATGAACAGCTCAGAATGCGCTCAATTC
ACCCCCTCGATCTCTCTCAACTCTCAAAAATGACAGGGATAGAGTACATGCTGAATGAAGTTATGGAGCCCCACCTTTTTGTTTTCCGAAAGCAGAAGAGGGATGGTCCT
GAGAAAGTCACACCAATGCTGACTTATTATATCTTGGATGGTTCTATTTACCAGGCGCCTCAGCTTTGCAATGTCTTTGCTGCCCGAGTTAGCCGGGCACTATATTACAT
ATCGAAGGCCTTTACTACTGCTTCCTCAAAGTTGGAGAAGATTGGATATGTCGATTCTGAGAACGAGAGTGAAGAAGTAAAACCTGCAAAAGAGACCATTGACTTTAAGG
AAGTAAAGCGAGTTGATCGTATTCTTGCTTCCTTACAGCGCAAGCTGCCACCTGCCCCTCCACCCCCACCATTTCCAGAAGGTTATGTTCCTGCTCCCGCATCAGAAGCA
GAAAAAGGCCCTGAAAGCCAGCAAGGAGAACTGCAACAGCCTGCAGCAGATCCCATTATTGATCAAGGCCCTGCTAAAAGGATGAAATTTTGA
mRNA sequenceShow/hide mRNA sequence
TCTTAGTTCCTATGTTGTCGACTCGTCGGGAAACAAAGAAAAAGGGGAAGCGGCATTTTACTCAGGCGAAGGGATCTGTTAATTCTACACTTTCGGGCGGGGAAAAGTGA
AATCTCAAGCAAATGGCAACTCCACCGCCACCGGGGATCGGGAATTTTGAGGGAGGACCACCGCTGGCAGCGCCTCAGCCGCCAGGCACGGACATGACTGGAATTTGCTT
TAGAGACCAACTCTGGCTCAATACTTACCCTCTCGATCGGAACCTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGACTTGTAACAATGAACAGCTCAGAA
TGCGCTCAATTCACCCCCTCGATCTCTCTCAACTCTCAAAAATGACAGGGATAGAGTACATGCTGAATGAAGTTATGGAGCCCCACCTTTTTGTTTTCCGAAAGCAGAAG
AGGGATGGTCCTGAGAAAGTCACACCAATGCTGACTTATTATATCTTGGATGGTTCTATTTACCAGGCGCCTCAGCTTTGCAATGTCTTTGCTGCCCGAGTTAGCCGGGC
ACTATATTACATATCGAAGGCCTTTACTACTGCTTCCTCAAAGTTGGAGAAGATTGGATATGTCGATTCTGAGAACGAGAGTGAAGAAGTAAAACCTGCAAAAGAGACCA
TTGACTTTAAGGAAGTAAAGCGAGTTGATCGTATTCTTGCTTCCTTACAGCGCAAGCTGCCACCTGCCCCTCCACCCCCACCATTTCCAGAAGGTTATGTTCCTGCTCCC
GCATCAGAAGCAGAAAAAGGCCCTGAAAGCCAGCAAGGAGAACTGCAACAGCCTGCAGCAGATCCCATTATTGATCAAGGCCCTGCTAAAAGGATGAAATTTTGAAGGAA
GTGCTTATGCTATGTTTCTCATTCATGTTGAGAAACATATTTAAACCTGCAACCGAAGCTCAACACGGATGAAATGGCTGCCCGATGCATGGTGAGTTATCAACAACACC
CCCCCCC
Protein sequenceShow/hide protein sequence
MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGP
EKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEA
EKGPESQQGELQQPAADPIIDQGPAKRMKF