; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G001410 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G001410
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTATA-binding protein-associated factor 2N isoform X3
Genome locationCmo_Chr01:609441..610821
RNA-Seq ExpressionCmoCh01G001410
SyntenyCmoCh01G001410
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036500.1 hypothetical protein SDJN02_00117 [Cucurbita argyrosperma subsp. argyrosperma]3.2e-7786.21Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANP-AAAAARTGASAWKSGDWICAR-----------------------YASKRANLKETS
        FDMPRSRGLSPFGFANP AAAAARTGASAWKSGDWICAR                       YASKRANLKETS
Subjt:  FDMPRSRGLSPFGFANP-AAAAARTGASAWKSGDWICAR-----------------------YASKRANLKETS

XP_022948549.1 periodic tryptophan protein 2 isoform X2 [Cucurbita moschata]6.0e-7695.86Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN
        FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICAR      N
Subjt:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN

XP_022948551.1 TATA-binding protein-associated factor 2N isoform X3 [Cucurbita moschata]6.0e-7695.86Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN
        FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICAR      N
Subjt:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN

XP_022998917.1 periodic tryptophan protein 2 isoform X2 [Cucurbita maxima]1.8e-7595.17Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN
        FDMPRSRGLSPFGFANPAAAAARTG SAWKSGDWICAR      N
Subjt:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN

XP_022998918.1 TATA-binding protein-associated factor 2N isoform X3 [Cucurbita maxima]1.8e-7595.17Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN
        FDMPRSRGLSPFGFANPAAAAARTG SAWKSGDWICAR      N
Subjt:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN

TrEMBL top hitse value%identityAlignment
A0A6J1DJ84 TATA-binding protein-associated factor 2N-like1.0e-6081.38Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRD CQRCGDPKS  GG DFG L+NGGGRGGS FGYGGSDVRPGDWYC++GNCGAHNFASRSSCFKCGAFKDDM    GGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN
        FD+PRSRG S FGFAN   A  RTGASAWKSGDWICAR      N
Subjt:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN

A0A6J1G9I4 TATA-binding protein-associated factor 2N isoform X32.9e-7695.86Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN
        FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICAR      N
Subjt:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN

A0A6J1GA82 periodic tryptophan protein 2 isoform X22.9e-7695.86Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN
        FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICAR      N
Subjt:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN

A0A6J1K9C2 periodic tryptophan protein 2 isoform X28.5e-7695.17Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN
        FDMPRSRGLSPFGFANPAAAAARTG SAWKSGDWICAR      N
Subjt:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN

A0A6J1KI51 TATA-binding protein-associated factor 2N isoform X38.5e-7695.17Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN
        FDMPRSRGLSPFGFANPAAAAARTG SAWKSGDWICAR      N
Subjt:  FDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c8.9e-0631.65Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGDP-----KSGGGGCDFGALL---NGGGRGGSGF--GYGGS-----------------------------------
        RPGDWNC  C   NFQRR  C RC  P      +  G   F       N  G G S F   YGGS                                   
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGDP-----KSGGGGCDFGALL---NGGGRGGSGF--GYGGS-----------------------------------

Query:  DVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAA
          R GDW C    CG HNFA    C +CGA +   +  A
Subjt:  DVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAA

Q27294 RNA-binding protein cabeza6.4e-0443.84Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHN
        R GDW C SC + NF  R+ C RC  PK    G D G+   GGG G  G G GG   R  D     G  G HN
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHN

Q92804 TATA-binding protein-associated factor 2N8.4e-0443.42Show/hide
Query:  GGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRG
        GGG   G    GG RG  GF   G D + GDW C   +CG  NFA R+SC +C   + + S  +GG DF   R RG
Subjt:  GGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRG

Arabidopsis top hitse value%identityAlignment
AT1G50300.1 TBP-associated factor 153.0e-0436.36Show/hide
Query:  GDWNC--RSCQHLNFQRRDMCQRCGDPK-SGGGGCDFGALLNGGGRGGSGFGYGGSDVR-----------PGDWYCSIGNCGAHNFASRSSCFKCGAFK
        GDW C   SC ++NF  R +C RCG  + +G  G   GA   G GRG  G   GG+  +           P DW C +  CG  N+A R  C  C   K
Subjt:  GDWNC--RSCQHLNFQRRDMCQRCGDPK-SGGGGCDFGALLNGGGRGGSGFGYGGSDVR-----------PGDWYCSIGNCGAHNFASRSSCFKCGAFK

AT2G17975.1 zinc finger (Ran-binding) family protein5.0e-0429.91Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGG-------GCDFGALLNGGGRGGSGFGYGGS---------------DVRPGDWYCSIGNCGAHNFAS
        + R GDW C  C + N+  R+ C++CG  K           G      L+   RG       GS               + R GDW C    CG HN++S
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGG-------GCDFGALLNGGGRGGSGFGYGGS---------------DVRPGDWYCSIGNCGAHNFAS

Query:  RSSCFKC
        R  C KC
Subjt:  RSSCFKC

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein1.5e-1937.31Show/hide
Query:  GDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMP
        GDW C +CQH NF++R+ CQ+CG PK GG                S + Y  ++V  GDWYC   NCG+HN+ASR+SC++CG  K + +           
Subjt:  GDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMP

Query:  RSRGLSPFGFANPAAAAARTGASAWKSGDWICAR
        +  G     + N  AA        WK+GDW+C R
Subjt:  RSRGLSPFGFANPAAAAARTGASAWKSGDWICAR

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein3.0e-4157.96Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG---GGCDFGALLNGGGRGGSGFGY-GGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAA
        MSRPGDWNCRSC HLNFQRRD CQRCGD +SG    GG DFG   N GGR  S FG+  GSDVRPGDWYC++GNCG HNFASRS+CFKCG FKD+  A  
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG---GGCDFGALLNGGGRGGSGFGY-GGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAA

Query:  GG--------FDFDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN
        GG        FD D+ RSR                 G S+WKSGDWIC R      N
Subjt:  GG--------FDFDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRAN

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein2.4e-3855.06Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNG-GGRG-GSGFGYG-GSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMS----
        M+RPGDWNCR C HLNFQRRD CQRC +P+ GG   D   LL+G GGR   S FG+  G DVRPGDWYC++G+CG HNFA+RSSCFKCGA KD+ S    
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNG-GGRG-GSGFGYG-GSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMS----

Query:  -AAAGGFDFDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRANLKETS
         A  G  D ++   RGL  FGF   ++    TG S WKSGDWIC R      N    S
Subjt:  -AAAGGFDFDMPRSRGLSPFGFANPAAAAARTGASAWKSGDWICARYASKRANLKETS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGACCGGGAGACTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGGGACCCCAAGTCCGGCGGCGGTGGATGTGA
CTTTGGAGCTCTGTTAAACGGCGGCGGAAGAGGCGGGTCTGGATTCGGGTACGGCGGCTCCGATGTGAGGCCCGGCGACTGGTATTGCAGCATAGGGAACTGTGGAGCCC
ACAACTTCGCAAGCAGGTCGAGCTGCTTCAAATGTGGGGCGTTCAAAGACGACATGTCGGCTGCAGCAGGAGGCTTCGACTTCGATATGCCGCGCTCTAGAGGACTGTCC
CCTTTTGGCTTTGCCAATCCCGCCGCCGCCGCCGCCCGTACTGGTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGCGCCAGGTATGCTTCCAAGAGAGCAAATTTGAA
AGAGACTTCATAG
mRNA sequenceShow/hide mRNA sequence
TGTGTATAAAAACGCCCCTTCCCTTCTTTACCTATTCCATACCCATTCTTCTTTCTTTCTCTTTTAACCCCAACCATTCCCCTTTCACTTAAGAGAGAAGAGGAGAGAAG
ATGAGCAGACCGGGAGACTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGGGACCCCAAGTCCGGCGGCGGTGGATGTGA
CTTTGGAGCTCTGTTAAACGGCGGCGGAAGAGGCGGGTCTGGATTCGGGTACGGCGGCTCCGATGTGAGGCCCGGCGACTGGTATTGCAGCATAGGGAACTGTGGAGCCC
ACAACTTCGCAAGCAGGTCGAGCTGCTTCAAATGTGGGGCGTTCAAAGACGACATGTCGGCTGCAGCAGGAGGCTTCGACTTCGATATGCCGCGCTCTAGAGGACTGTCC
CCTTTTGGCTTTGCCAATCCCGCCGCCGCCGCCGCCCGTACTGGTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGCGCCAGGTATGCTTCCAAGAGAGCAAATTTGAA
AGAGACTTCATAGCCAGCACTAGCCTTCTTCTTCTTTCTTTTAGTTTCTTTAGTTTTCTTATTATTATTATTTTTTGTAACTTTTATCTTTTCTGGATGATGCTATTTCA
GTGATCAAAAATTGAGATATTATCCAAAAATCAATCTTTATTCTCTGTTGCTGTCATATCTAATGAAAACCAAAAA
Protein sequenceShow/hide protein sequence
MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLS
PFGFANPAAAAARTGASAWKSGDWICARYASKRANLKETS