; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G002450 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G002450
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionWD_REPEATS_REGION domain-containing protein
Genome locationCmo_Chr01:1111108..1115316
RNA-Seq ExpressionCmoCh01G002450
SyntenyCmoCh01G002450
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR012972 - NLE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606887.1 hypothetical protein SDJN03_00229, partial [Cucurbita argyrosperma subsp. sororia]7.8e-5396.46Show/hide
Query:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQIQPQDSERGSPQ
        MATKMDVEHKEAI NVMI LTDPEGAPLGAPIDLPQNAGPQQL+QMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQIQPQDSERGSPQ
Subjt:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQIQPQDSERGSPQ

Query:  RPGFPAKDEAGKL
        RPGFPAKDEAGK+
Subjt:  RPGFPAKDEAGKL

KAG7036593.1 hypothetical protein SDJN02_00212, partial [Cucurbita argyrosperma subsp. argyrosperma]5.7e-18982.23Show/hide
Query:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQIQPQDSERGSPQ
        MATKMDVEHKEAI NVMI LTDPEGAPLGAPIDLPQNAGPQQL+QMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQIQPQDSERGSPQ
Subjt:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQIQPQDSERGSPQ

Query:  RPGFPAKDEAGKLLFERFKSLNHINLVKLGGMGPENLLFERSRYDNSIRSKTCNEPRFVSAGIAPENAFDLKV-RILRFGKLVPIQGGILPTRSLFPRFR
        RPGFPAKDEAG                KLGGMGPENLLFERSRYDNSIRSKTCNEPRFVSAGIAPENAFDLK+ +I    +       I+P    F    
Subjt:  RPGFPAKDEAGKLLFERFKSLNHINLVKLGGMGPENLLFERSRYDNSIRSKTCNEPRFVSAGIAPENAFDLKV-RILRFGKLVPIQGGILPTRSLFPRFR

Query:  VSRLERFWK-DARDRKTRFGIASPIFFGIEPENMLFESSSETISKLGRGIGPSKRLELKSTSAKGATFSGFSSRPSNRWPNHSGNSPTNLLLDRSRCSRL
        +  LER+W+   RDRKTRFGIASPIFFGIEPENMLFES SETISKLGRGIGPSKRLELKSTSAKGA FSG                        SRCSRL
Subjt:  VSRLERFWK-DARDRKTRFGIASPIFFGIEPENMLFESSSETISKLGRGIGPSKRLELKSTSAKGATFSGFSSRPSNRWPNHSGNSPTNLLLDRSRCSRL

Query:  KSGRAGLQFSVPSRNSVKSTTEREVKLTVKGDEMAPDKPQSLICNSVKNLSLLNILNQSGFTVERSMLSIARYFKDTSPATHSRLSRTKPKFSISRYCKL
        KSGRAGLQFSVPSRNSVKSTTEREVKLTVKGDEMAPDKPQSL CNSVKNLSLLNILNQSGFTVERSMLSIARYFKDTSPATHSRLSRTKPKFSISRYCKL
Subjt:  KSGRAGLQFSVPSRNSVKSTTEREVKLTVKGDEMAPDKPQSLICNSVKNLSLLNILNQSGFTVERSMLSIARYFKDTSPATHSRLSRTKPKFSISRYCKL

Query:  EMLPKLGGSKPPKPAFDRFKYCNFFKEPKNSGTGISLNV
        EMLPKLGGSKPPKPAFDRFKYCNFFKEPKNSGTGISLNV
Subjt:  EMLPKLGGSKPPKPAFDRFKYCNFFKEPKNSGTGISLNV

XP_004149723.1 notchless protein homolog [Cucumis sativus]6.4e-1554.74Show/hide
Query:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTI-FWLQKCRKELESQLQI--QPQ
        MAT+MD+EH+E   NVMILLTDPEG PLGAP+ LPQNAGPQQLQQMVNKLL+  EK  P  +  +  + + ++  +L+K +  +E  L +  QPQ
Subjt:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTI-FWLQKCRKELESQLQI--QPQ

XP_022152686.1 notchless protein homolog [Momordica charantia]1.1e-1456.38Show/hide
Query:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQI--QPQ
        MA++MDVE +E I NVMILLTDPEG PLGAP+ LPQNAGPQQLQQMVNKLLN  EK     Y +      +   +L+K +  +E  L +  QPQ
Subjt:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQI--QPQ

XP_038905776.1 notchless protein homolog [Benincasa hispida]1.3e-1557.45Show/hide
Query:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQI--QPQ
        MA +MDVEH+E I NVMILLTDPEG PLGAP+ LPQNAGPQQLQQMVNKLLN  EK     Y +      +   +L+K +  +E  L +  QPQ
Subjt:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQI--QPQ

TrEMBL top hitse value%identityAlignment
A0A0A0LET9 WD_REPEATS_REGION domain-containing protein3.1e-1554.74Show/hide
Query:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTI-FWLQKCRKELESQLQI--QPQ
        MAT+MD+EH+E   NVMILLTDPEG PLGAP+ LPQNAGPQQLQQMVNKLL+  EK  P  +  +  + + ++  +L+K +  +E  L +  QPQ
Subjt:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTI-FWLQKCRKELESQLQI--QPQ

A0A1S3CGX2 notchless protein homolog3.1e-1554.74Show/hide
Query:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTI-FWLQKCRKELESQLQI--QPQ
        MAT+MD+EH+E   NVMILLTDPEG PLGAP+ LPQNAGPQQLQQMVNKLL+  EK  P  +  +  + + ++  +L+K +  +E  L +  QPQ
Subjt:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTI-FWLQKCRKELESQLQI--QPQ

A0A2N9HRJ7 LRRNT_2 domain-containing protein5.8e-3057.36Show/hide
Query:  KPQSLICNSVKNLSLLNILNQSGFTVERSMLSIARYFKDTSPATHSRLSRTKPKFSISRYCKLEMLPKLGGSKPPKPAFDRFKYCNFFKEPKNSGTGISL
        +PQ   CNSVK  SL N+  QS  ++ERS   I R F++T PA HSRLS TK ++  SRY KLE  PK GG  P  PA DR +YC F K+PKN+G G+ L
Subjt:  KPQSLICNSVKNLSLLNILNQSGFTVERSMLSIARYFKDTSPATHSRLSRTKPKFSISRYCKLEMLPKLGGSKPPKPAFDRFKYCNFFKEPKNSGTGISL

Query:  NVLKLKSKYLKDLSFVSDGLISPLRFQNP
        NVLKLKS+ LKDLSF ++G  SPL+FQNP
Subjt:  NVLKLKSKYLKDLSFVSDGLISPLRFQNP

A0A6J1DIH2 notchless protein homolog5.3e-1556.38Show/hide
Query:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQI--QPQ
        MA++MDVE +E I NVMILLTDPEG PLGAP+ LPQNAGPQQLQQMVNKLLN  EK     Y +      +   +L+K +  +E  L +  QPQ
Subjt:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQI--QPQ

A0A6J1J2A5 notchless protein homolog9.1e-1556.38Show/hide
Query:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQI--QPQ
        MAT+MDVE +E I NVMILLTDPEG PLGAP+ LPQNAGPQQLQQMVNKLL+  EK     Y +      +   +L+K +  +E  L +  QPQ
Subjt:  MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQI--QPQ

SwissProt top hitse value%identityAlignment
Q9FLX9 Notchless protein homolog1.8e-0449.12Show/hide
Query:  TKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEK-PY
        T MD +  +    VM LLTDPEG  LG+ + +PQ AGP QL Q+VN+ L+  E  PY
Subjt:  TKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEK-PY

Arabidopsis top hitse value%identityAlignment
AT5G52820.1 WD-40 repeat family protein / notchless protein, putative1.3e-0549.12Show/hide
Query:  TKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEK-PY
        T MD +  +    VM LLTDPEG  LG+ + +PQ AGP QL Q+VN+ L+  E  PY
Subjt:  TKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEK-PY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACGAAGATGGATGTAGAGCACAAGGAAGCTATCGGCAATGTCATGATCCTCTTGACGGACCCCGAAGGCGCGCCTTTGGGAGCTCCCATTGATCTTCCCCAAAA
TGCAGGGCCTCAGCAGCTTCAGCAAATGGTCAATAAGCTTCTCAACAAGATGGAGAAACCTTACCCACAACTTTATCAAGCAACTGGAAGTAAGCATTCGACCACGATCT
TTTGGCTGCAAAAATGCAGAAAGGAACTAGAATCCCAGCTGCAAATCCAACCCCAAGACTCAGAAAGGGGTTCTCCACAGAGACCAGGATTTCCAGCAAAAGATGAAGCG
GGAAAGTTATTGTTCGAGAGATTCAAATCACTCAACCATATTAATTTAGTCAAGCTTGGAGGAATGGGACCTGAGAACCTGTTGTTTGAAAGATCAAGATATGATAATTC
TATCAGGTCCAAGACTTGCAACGAGCCAAGATTTGTGAGTGCAGGAATCGCTCCGGAAAATGCATTTGACCTCAAGGTGAGGATTCTCAGATTTGGAAAACTAGTTCCAA
TCCAAGGAGGAATACTACCCACAAGATCATTATTCCCAAGATTCAGAGTTTCCAGATTGGAGAGATTTTGGAAAGATGCCAGAGACAGAAAGACCAGGTTCGGCATTGCC
TCACCTATATTCTTTGGTATAGAACCTGAGAATATGTTATTTGAAAGTTCGAGTGAAACAATCTCAAAGCTTGGAAGAGGAATAGGTCCTTCAAAGAGATTGGAGCTGAA
ATCAACATCTGCAAAGGGAGCTACTTTCAGCGGGTTCAGTAGTCGTCCCTCTAACCGTTGGCCTAACCACTCCGGCAATTCACCCACCAATTTGTTGTTGGACAGATCTA
GATGCTCCAGGCTAAAGAGTGGACGAGCTGGATTGCAGTTTTCAGTTCCTTCAAGAAATTCAGTTAAATCAACGACAGAGAGAGAAGTGAAGTTGACTGTCAAGGGAGAT
GAAATGGCACCAGATAAGCCACAATCACTCATATGCAACTCAGTTAAGAATCTAAGCCTGCTCAATATCTTAAACCAGTCTGGTTTCACTGTGGAAAGATCCATGTTATC
CATTGCAAGATACTTCAAGGACACAAGCCCAGCTACCCATTCAAGATTATCAAGAACTAAACCCAAATTCTCCATATCAAGATATTGCAAGCTAGAAATGTTACCCAAAC
TTGGAGGAAGTAAACCACCAAAGCCAGCATTTGATAGGTTCAAATACTGCAACTTCTTCAAAGAGCCAAAGAATTCAGGAACTGGAATATCATTGAATGTGTTAAAACTC
AAATCCAAATATCTCAAGGACCTTAGTTTTGTGAGCGATGGACTTATCTCTCCACTAAGATTCCAGAATCCTTGCTCCCCTAAGGGATGTGGGTTATGA
mRNA sequenceShow/hide mRNA sequence
CCAAAGCCCTCAATTACTTCAATTTTGCAGGGAGACATCGAACTCAAATTTGCCTTCGTCTCGTTCCTGAATTTCGCAGTTGCTTGAAACTTAGTCATCCATGGCTACGA
AGATGGATGTAGAGCACAAGGAAGCTATCGGCAATGTCATGATCCTCTTGACGGACCCCGAAGGCGCGCCTTTGGGAGCTCCCATTGATCTTCCCCAAAATGCAGGGCCT
CAGCAGCTTCAGCAAATGGTCAATAAGCTTCTCAACAAGATGGAGAAACCTTACCCACAACTTTATCAAGCAACTGGAAGTAAGCATTCGACCACGATCTTTTGGCTGCA
AAAATGCAGAAAGGAACTAGAATCCCAGCTGCAAATCCAACCCCAAGACTCAGAAAGGGGTTCTCCACAGAGACCAGGATTTCCAGCAAAAGATGAAGCGGGAAAGTTAT
TGTTCGAGAGATTCAAATCACTCAACCATATTAATTTAGTCAAGCTTGGAGGAATGGGACCTGAGAACCTGTTGTTTGAAAGATCAAGATATGATAATTCTATCAGGTCC
AAGACTTGCAACGAGCCAAGATTTGTGAGTGCAGGAATCGCTCCGGAAAATGCATTTGACCTCAAGGTGAGGATTCTCAGATTTGGAAAACTAGTTCCAATCCAAGGAGG
AATACTACCCACAAGATCATTATTCCCAAGATTCAGAGTTTCCAGATTGGAGAGATTTTGGAAAGATGCCAGAGACAGAAAGACCAGGTTCGGCATTGCCTCACCTATAT
TCTTTGGTATAGAACCTGAGAATATGTTATTTGAAAGTTCGAGTGAAACAATCTCAAAGCTTGGAAGAGGAATAGGTCCTTCAAAGAGATTGGAGCTGAAATCAACATCT
GCAAAGGGAGCTACTTTCAGCGGGTTCAGTAGTCGTCCCTCTAACCGTTGGCCTAACCACTCCGGCAATTCACCCACCAATTTGTTGTTGGACAGATCTAGATGCTCCAG
GCTAAAGAGTGGACGAGCTGGATTGCAGTTTTCAGTTCCTTCAAGAAATTCAGTTAAATCAACGACAGAGAGAGAAGTGAAGTTGACTGTCAAGGGAGATGAAATGGCAC
CAGATAAGCCACAATCACTCATATGCAACTCAGTTAAGAATCTAAGCCTGCTCAATATCTTAAACCAGTCTGGTTTCACTGTGGAAAGATCCATGTTATCCATTGCAAGA
TACTTCAAGGACACAAGCCCAGCTACCCATTCAAGATTATCAAGAACTAAACCCAAATTCTCCATATCAAGATATTGCAAGCTAGAAATGTTACCCAAACTTGGAGGAAG
TAAACCACCAAAGCCAGCATTTGATAGGTTCAAATACTGCAACTTCTTCAAAGAGCCAAAGAATTCAGGAACTGGAATATCATTGAATGTGTTAAAACTCAAATCCAAAT
ATCTCAAGGACCTTAGTTTTGTGAGCGATGGACTTATCTCTCCACTAAGATTCCAGAATCCTTGCTCCCCTAAGGGATGTGGGTTATGA
Protein sequenceShow/hide protein sequence
MATKMDVEHKEAIGNVMILLTDPEGAPLGAPIDLPQNAGPQQLQQMVNKLLNKMEKPYPQLYQATGSKHSTTIFWLQKCRKELESQLQIQPQDSERGSPQRPGFPAKDEA
GKLLFERFKSLNHINLVKLGGMGPENLLFERSRYDNSIRSKTCNEPRFVSAGIAPENAFDLKVRILRFGKLVPIQGGILPTRSLFPRFRVSRLERFWKDARDRKTRFGIA
SPIFFGIEPENMLFESSSETISKLGRGIGPSKRLELKSTSAKGATFSGFSSRPSNRWPNHSGNSPTNLLLDRSRCSRLKSGRAGLQFSVPSRNSVKSTTEREVKLTVKGD
EMAPDKPQSLICNSVKNLSLLNILNQSGFTVERSMLSIARYFKDTSPATHSRLSRTKPKFSISRYCKLEMLPKLGGSKPPKPAFDRFKYCNFFKEPKNSGTGISLNVLKL
KSKYLKDLSFVSDGLISPLRFQNPCSPKGCGL