; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G002590 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G002590
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L44
Genome locationCmo_Chr01:1177720..1178487
RNA-Seq ExpressionCmoCh01G002590
SyntenyCmoCh01G002590
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR040411 - Uncharacterized protein At5g23160-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052773.1 60S ribosomal protein L44 [Cucumis melo var. makuwa]4.8e-4954.2Show/hide
Query:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI
        MA++S+K  PSK P  FL  CF SS K+  KK  +   R+ R  S  FRFKKSSATVP+DVA P       D+ SFSP+FKKPPP  LI  +AP V  +I
Subjt:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI

Query:  V-----ELIKPSQPWKKTESTRSDF----LTPAKRTAALLHSISLPSRRLNRQKDFKKTVS-HL-SAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVI
        V     E +KPSQ  KK EST+S+F    L+P ++ AA LHS+S PS+ L RQKDFK++VS HL +AV T +P  S+  KP  K   N P K LD +I++
Subjt:  V-----ELIKPSQPWKKTESTRSDF----LTPAKRTAALLHSISLPSRRLNRQKDFKKTVS-HL-SAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVI

Query:  VAVAIVVLWGQLCAILCTTALFYFCRRLRSETELEGGG
        V VAI+VLWG+LCAILCTTALFY  RR+RSE E+ GGG
Subjt:  VAVAIVVLWGQLCAILCTTALFYFCRRLRSETELEGGG

KAG6606901.1 60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia]1.2e-12495.62Show/hide
Query:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI
        MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGR DSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI
Subjt:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI

Query:  VELIKPSQPWKKTESTRSDFLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAVAIVVLWGQ
        VELIKPSQ WKKTESTR D LTPAKRTAALLHSISLPSRRLNRQKD KKTVSHLSAVKTPTPTSSERRKPADK PMNSPAKILDLIIVIVAVAIVVLWGQ
Subjt:  VELIKPSQPWKKTESTRSDFLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAVAIVVLWGQ

Query:  LCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFRKVSGEVCARLR
        LCAILCTTALFYFCRRLRSETE EGGGEMRVLNRKGSGF KV GEVC R R
Subjt:  LCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFRKVSGEVCARLR

KGN58547.1 hypothetical protein Csa_002056 [Cucumis sativus]7.4e-5055.04Show/hide
Query:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI
        MA++SE + PSK PLHFL  CF SS K+ TKK  +   R  R  S  FRFKKSSATVP+DVA P       D+ SF PEFKK PP   I  +AP V  +I
Subjt:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI

Query:  V--ELIKPSQPWKKTESTRSDF----LTPAKRTAALLHSISLPSRRLNRQKDFKKTVS-HL-SAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAV
        V    +KPSQ  KK  ST+S+F    L+P ++TAALLHS+SLPS++L RQK FKK VS HL +AV T +P  S+  KP  K P   P K  D +I++V V
Subjt:  V--ELIKPSQPWKKTESTRSDF----LTPAKRTAALLHSISLPSRRLNRQKDFKKTVS-HL-SAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAV

Query:  AIVVLWGQLCAILCTTALFYFCRRLRSETELEGGGEMR
        AIV+LWG+LCAILCTTALFY  RR+RSE E +GGG  R
Subjt:  AIVVLWGQLCAILCTTALFYFCRRLRSETELEGGGEMR

XP_022934627.1 uncharacterized protein LOC111441760 [Cucurbita moschata]3.5e-3948.59Show/hide
Query:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI
        MAE+S+K       LHFL RCF SSP VQ +K       + R PS RFRFKKSSATVP+D A     VPC D+ S SPEF  PPP PLIK     +    
Subjt:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI

Query:  VELIKPSQPWKKTESTRSDFLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHL---SAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAVAIVVL
         + IKPS+  KK+EST+S+  + + ++ +     + PS  L+ +K  KK++SHL   +A  T +  SS+R     KPP NSP K  DL+IVIVAVAIVVL
Subjt:  VELIKPSQPWKKTESTRSDFLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHL---SAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAVAIVVL

Query:  WGQLCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFRKVSGEV
        WG+LCAILCT ALFY  R LRS+ EL+      V+   G  F +VS EV
Subjt:  WGQLCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFRKVSGEV

XP_022949237.1 uncharacterized protein LOC111452650 [Cucurbita moschata]2.6e-135100Show/hide
Query:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI
        MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI
Subjt:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI

Query:  VELIKPSQPWKKTESTRSDFLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAVAIVVLWGQ
        VELIKPSQPWKKTESTRSDFLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAVAIVVLWGQ
Subjt:  VELIKPSQPWKKTESTRSDFLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAVAIVVLWGQ

Query:  LCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFRKVSGEVCARLRGTAM
        LCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFRKVSGEVCARLRGTAM
Subjt:  LCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFRKVSGEVCARLRGTAM

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ2 Uncharacterized protein3.6e-5055.04Show/hide
Query:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI
        MA++SE + PSK PLHFL  CF SS K+ TKK  +   R  R  S  FRFKKSSATVP+DVA P       D+ SF PEFKK PP   I  +AP V  +I
Subjt:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI

Query:  V--ELIKPSQPWKKTESTRSDF----LTPAKRTAALLHSISLPSRRLNRQKDFKKTVS-HL-SAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAV
        V    +KPSQ  KK  ST+S+F    L+P ++TAALLHS+SLPS++L RQK FKK VS HL +AV T +P  S+  KP  K P   P K  D +I++V V
Subjt:  V--ELIKPSQPWKKTESTRSDF----LTPAKRTAALLHSISLPSRRLNRQKDFKKTVS-HL-SAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAV

Query:  AIVVLWGQLCAILCTTALFYFCRRLRSETELEGGGEMR
        AIV+LWG+LCAILCTTALFY  RR+RSE E +GGG  R
Subjt:  AIVVLWGQLCAILCTTALFYFCRRLRSETELEGGGEMR

A0A5A7UA28 60S ribosomal protein L442.3e-4954.2Show/hide
Query:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI
        MA++S+K  PSK P  FL  CF SS K+  KK  +   R+ R  S  FRFKKSSATVP+DVA P       D+ SFSP+FKKPPP  LI  +AP V  +I
Subjt:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI

Query:  V-----ELIKPSQPWKKTESTRSDF----LTPAKRTAALLHSISLPSRRLNRQKDFKKTVS-HL-SAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVI
        V     E +KPSQ  KK EST+S+F    L+P ++ AA LHS+S PS+ L RQKDFK++VS HL +AV T +P  S+  KP  K   N P K LD +I++
Subjt:  V-----ELIKPSQPWKKTESTRSDF----LTPAKRTAALLHSISLPSRRLNRQKDFKKTVS-HL-SAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVI

Query:  VAVAIVVLWGQLCAILCTTALFYFCRRLRSETELEGGG
        V VAI+VLWG+LCAILCTTALFY  RR+RSE E+ GGG
Subjt:  VAVAIVVLWGQLCAILCTTALFYFCRRLRSETELEGGG

A0A6J1F3C2 uncharacterized protein LOC1114417601.7e-3948.59Show/hide
Query:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI
        MAE+S+K       LHFL RCF SSP VQ +K       + R PS RFRFKKSSATVP+D A     VPC D+ S SPEF  PPP PLIK     +    
Subjt:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI

Query:  VELIKPSQPWKKTESTRSDFLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHL---SAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAVAIVVL
         + IKPS+  KK+EST+S+  + + ++ +     + PS  L+ +K  KK++SHL   +A  T +  SS+R     KPP NSP K  DL+IVIVAVAIVVL
Subjt:  VELIKPSQPWKKTESTRSDFLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHL---SAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAVAIVVL

Query:  WGQLCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFRKVSGEV
        WG+LCAILCT ALFY  R LRS+ EL+      V+   G  F +VS EV
Subjt:  WGQLCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFRKVSGEV

A0A6J1GBH7 uncharacterized protein LOC1114526501.2e-135100Show/hide
Query:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI
        MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI
Subjt:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI

Query:  VELIKPSQPWKKTESTRSDFLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAVAIVVLWGQ
        VELIKPSQPWKKTESTRSDFLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAVAIVVLWGQ
Subjt:  VELIKPSQPWKKTESTRSDFLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAVAIVVLWGQ

Query:  LCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFRKVSGEVCARLRGTAM
        LCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFRKVSGEVCARLRGTAM
Subjt:  LCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFRKVSGEVCARLRGTAM

A0A6J1IZW6 uncharacterized protein LOC1114814551.6e-3748.21Show/hide
Query:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI
        MAE+S+K       LHFL RCF SSP VQ +K       + R PS RFRFKK SATVP+D A     VPC D+ SFSPEF  PPP   IK     +    
Subjt:  MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKI

Query:  VELIKPSQPWKKTESTRS----DFLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLS-AVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAVAIV
         + IK S+  KK+EST+S    + L PAK+T+  LHS          +K  KK++SHL  AV    PT+S     + K P NSP    DL+ VIVAVAIV
Subjt:  VELIKPSQPWKKTESTRS----DFLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLS-AVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAVAIV

Query:  VLWGQLCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFRKVSGEV
        VLWG+LCAILCT ALFY  R LRS+ EL+      V+   G  F KVS EV
Subjt:  VLWGQLCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFRKVSGEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGCTTCTGAAAAAATGTCTCCGTCCAAACGCCCACTCCATTTTCTCCTCCGCTGCTTCGGATCTTCCCCCAAAGTTCAAACCAAGAAGAATCCTACGACCGG
CCGACGGGACAGCCGGATTCCGTCGCCTCGGTTCCGATTTAAGAAGTCCTCTGCAACTGTGCCAATCGACGTTGCCGTGCCGGAGATCACCGTGCCATGTGACGATAAAG
CCTCTTTTTCGCCGGAGTTTAAGAAACCGCCTCCCTCGCCGCTGATTAAATCCAGAGCTCCGACGGTCCGAACCAAGATCGTCGAGTTGATAAAGCCGAGTCAACCTTGG
AAGAAAACAGAGTCAACCCGGTCTGATTTCCTTACGCCGGCGAAAAGAACCGCCGCGTTATTGCATTCTATCTCTCTTCCCTCCCGGAGACTAAACCGCCAAAAAGATTT
CAAAAAAACAGTATCTCATCTCTCCGCCGTCAAAACCCCCACGCCGACGTCATCCGAGCGGAGGAAACCAGCGGATAAGCCTCCGATGAATTCCCCGGCGAAGATACTCG
ATCTGATTATTGTGATTGTTGCAGTGGCGATTGTGGTACTGTGGGGACAACTCTGCGCCATACTCTGCACGACGGCACTGTTCTATTTCTGCCGCCGATTGAGATCAGAA
ACCGAATTAGAGGGCGGCGGCGAGATGCGAGTCTTGAATCGAAAAGGAAGTGGTTTCAGGAAGGTTTCTGGAGAGGTTTGTGCAAGGTTACGGGGAACCGCCATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAGCTTCTGAAAAAATGTCTCCGTCCAAACGCCCACTCCATTTTCTCCTCCGCTGCTTCGGATCTTCCCCCAAAGTTCAAACCAAGAAGAATCCTACGACCGG
CCGACGGGACAGCCGGATTCCGTCGCCTCGGTTCCGATTTAAGAAGTCCTCTGCAACTGTGCCAATCGACGTTGCCGTGCCGGAGATCACCGTGCCATGTGACGATAAAG
CCTCTTTTTCGCCGGAGTTTAAGAAACCGCCTCCCTCGCCGCTGATTAAATCCAGAGCTCCGACGGTCCGAACCAAGATCGTCGAGTTGATAAAGCCGAGTCAACCTTGG
AAGAAAACAGAGTCAACCCGGTCTGATTTCCTTACGCCGGCGAAAAGAACCGCCGCGTTATTGCATTCTATCTCTCTTCCCTCCCGGAGACTAAACCGCCAAAAAGATTT
CAAAAAAACAGTATCTCATCTCTCCGCCGTCAAAACCCCCACGCCGACGTCATCCGAGCGGAGGAAACCAGCGGATAAGCCTCCGATGAATTCCCCGGCGAAGATACTCG
ATCTGATTATTGTGATTGTTGCAGTGGCGATTGTGGTACTGTGGGGACAACTCTGCGCCATACTCTGCACGACGGCACTGTTCTATTTCTGCCGCCGATTGAGATCAGAA
ACCGAATTAGAGGGCGGCGGCGAGATGCGAGTCTTGAATCGAAAAGGAAGTGGTTTCAGGAAGGTTTCTGGAGAGGTTTGTGCAAGGTTACGGGGAACCGCCATGTGA
Protein sequenceShow/hide protein sequence
MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQPW
KKTESTRSDFLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPMNSPAKILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSE
TELEGGGEMRVLNRKGSGFRKVSGEVCARLRGTAM