; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G002600 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G002600
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L44
Genome locationCmo_Chr01:1180294..1183249
RNA-Seq ExpressionCmoCh01G002600
SyntenyCmoCh01G002600
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000552 - Ribosomal protein L44e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KCW65063.1 hypothetical protein EUGRSUZ_G02575 [Eucalyptus grandis]1.3e-3996.59Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQA
        VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IK+QA
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQA

KJB31844.1 hypothetical protein B456_005G210700 [Gossypium raimondii]5.8e-4071.88Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQA--LRNRWRQEGE
        VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IK+ A  LR    + G+
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQA--LRNRWRQEGE

Query:  GNISFLDPLSALSFC-DFFLTKSIVIGD
         ++ F   +  +  C  +F+  S+ + D
Subjt:  GNISFLDPLSALSFC-DFFLTKSIVIGD

KJB76838.1 hypothetical protein B456_012G133600 [Gossypium raimondii]4.4e-4096.63Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQAL
        VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IK+QAL
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQAL

KJB79862.1 hypothetical protein B456_013G070100 [Gossypium raimondii]4.4e-4096.63Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQAL
        VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IK+QAL
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQAL

PPR90132.1 hypothetical protein GOBAR_AA30548 [Gossypium barbadense]5.8e-4095.56Show/hide
Query:  KVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQAL
        KVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IK+ AL
Subjt:  KVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQAL

TrEMBL top hitse value%identityAlignment
A0A0D2RJ15 Uncharacterized protein2.8e-4071.88Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQA--LRNRWRQEGE
        VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IK+ A  LR    + G+
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQA--LRNRWRQEGE

Query:  GNISFLDPLSALSFC-DFFLTKSIVIGD
         ++ F   +  +  C  +F+  S+ + D
Subjt:  GNISFLDPLSALSFC-DFFLTKSIVIGD

A0A0D2S9Q7 Uncharacterized protein2.1e-4096.63Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQAL
        VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IK+QAL
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQAL

A0A0D2TMG0 Uncharacterized protein2.1e-4096.63Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQAL
        VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IK+QAL
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQAL

A0A0V0GWD2 Putative ovule protein (Fragment)9.6e-4169.5Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK-MQALRNRWRQEGEG
        VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IK  +       ++G+G
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK-MQALRNRWRQEGEG

Query:  NISF-LDPLSALSF--CDFF-----LTKSIVIGDEAIVSHP
           F ++ +S LS   C FF      T+ ++  DE ++S P
Subjt:  NISF-LDPLSALSF--CDFF-----LTKSIVIGDEAIVSHP

A0A2P5WGA8 Uncharacterized protein2.8e-4095.56Show/hide
Query:  KVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQAL
        KVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IK+ AL
Subjt:  KVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQAL

SwissProt top hitse value%identityAlignment
O23290 60S ribosomal protein L36a1.9e-3891.76Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IK
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK

O59870 60S ribosomal protein L449.3e-3380Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK
        VNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +K
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK

P0CQ50 60S ribosomal protein L441.2e-3280Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK
        VN+PKT++TYCK K C+KHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q A+K
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK

P0CQ51 60S ribosomal protein L441.2e-3280Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK
        VN+PKT++TYCK K C+KHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q A+K
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK

Q96499 60S ribosomal protein L442.4e-4197.65Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK
        VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IK
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK

Arabidopsis top hitse value%identityAlignment
AT3G23390.1 Zinc-binding ribosomal protein family protein1.4e-3991.76Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IK
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK

AT4G14320.1 Zinc-binding ribosomal protein family protein1.4e-3991.76Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IK
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK

AT4G14320.2 Zinc-binding ribosomal protein family protein1.4e-3991.76Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IK
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCTGAAGATTTATGTGATGGAAAAAGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATA
TAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCTAAAACTA
CCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCACGCTATCAAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAAC
ATCTCTTTTCTAGATCCGTTGTCTGCTCTTAGCTTTTGTGATTTCTTTTTGACAAAATCAATTGTTATCGGAGATGAAGCGATCGTCTCTCACCCTTGGCACCAGCAGCT
AGAAGAAGAGAAGCCATTGAAGCAGCCTGACCCAAACAGATGGTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGCTGAAGATTTATGTGATGGAAAAAGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATA
TAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCTAAAACTA
CCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCACGCTATCAAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAAC
ATCTCTTTTCTAGATCCGTTGTCTGCTCTTAGCTTTTGTGATTTCTTTTTGACAAAATCAATTGTTATCGGAGATGAAGCGATCGTCTCTCACCCTTGGCACCAGCAGCT
AGAAGAAGAGAAGCCATTGAAGCAGCCTGACCCAAACAGATGGTATTGA
Protein sequenceShow/hide protein sequence
MMLKIYVMEKVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQALRNRWRQEGEGN
ISFLDPLSALSFCDFFLTKSIVIGDEAIVSHPWHQQLEEEKPLKQPDPNRWY