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CmoCh01G002880 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G002880
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionBasic helix-loop-helix protein
Genome locationCmo_Chr01:1372502..1372711
RNA-Seq ExpressionCmoCh01G002880
SyntenyCmoCh01G002880
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFZ04515.1 hypothetical protein Acr_17g0000870 [Actinidia rufa]2.1e-0754.39Show/hide
Query:  RSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
        R +K V  K+++ LRK++PK ES+ L+GLFR+TA+YI+ LQM+V++MQ +V VL+GS
Subjt:  RSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
KAA0038125.1 basic helix-loop-helix protein [Cucumis melo var. makuwa]3.5e-1885Show/hide
Query:  SRSRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
        SRS S+KR+C KRI++LRKMIPK ES+ELNGLFRETADYIVWLQMKV+MMQALVHVLNGS
Subjt:  SRSRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
KDP28282.1 hypothetical protein JCGZ_14053 [Jatropha curcas]1.2e-0757.69Show/hide
Query:  KRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGSIND
        +R++ L+K++P+ ES+ L GLFRETADYI+ LQM+VK+MQ +V VL GS +D
Subjt:  KRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGSIND
KGN58133.1 hypothetical protein Csa_017541 [Cucumis sativus]1.5e-1883.61Show/hide
Query:  SSRSRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
        SSRS S+KR+C KRI+RL+KM+PK ES+ELNGLFRETADYIVWLQMKV+MMQALVHVLNGS
Subjt:  SSRSRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
XP_006444537.1 transcription factor UPBEAT1 [Citrus clementina]1.6e-0760.34Show/hide
Query:  SRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
        SR    V  K++K L+K+IP GE L L GLFRETADYI+ LQM+VK+MQ +V+VL GS
Subjt:  SRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
TrEMBL top hitse value%identityAlignment
A0A067HFY5 Uncharacterized protein7.8e-0860.34Show/hide
Query:  SRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
        SR    V  K++K L+K+IP GE L L GLFRETADYI+ LQM+VK+MQ +V+VL GS
Subjt:  SRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
A0A067JWP1 Uncharacterized protein6.0e-0857.69Show/hide
Query:  KRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGSIND
        +R++ L+K++P+ ES+ L GLFRETADYI+ LQM+VK+MQ +V VL GS +D
Subjt:  KRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGSIND
A0A0A0L8J6 Uncharacterized protein7.5e-1983.61Show/hide
Query:  SSRSRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
        SSRS S+KR+C KRI+RL+KM+PK ES+ELNGLFRETADYIVWLQMKV+MMQALVHVLNGS
Subjt:  SSRSRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
A0A5A7T9M0 Basic helix-loop-helix protein1.7e-1885Show/hide
Query:  SRSRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
        SRS S+KR+C KRI++LRKMIPK ES+ELNGLFRETADYIVWLQMKV+MMQALVHVLNGS
Subjt:  SRSRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
V4TW78 Uncharacterized protein7.8e-0860.34Show/hide
Query:  SRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
        SR    V  K++K L+K+IP GE L L GLFRETADYI+ LQM+VK+MQ +V+VL GS
Subjt:  SRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGS
SwissProt top hitse value%identityAlignment
O22901 Transcription factor UPBEAT14.1e-0647.54Show/hide
Query:  KGSSRSRSKKRVCCKRIKRLRKMIPKGESLE-LNGLFRETADYIVWLQMKVKMMQALVHVL
        K    SR   R   +R+K L++++P  ++ E L+GLFR+TADYI+ L+MKVK+MQ +V VL
Subjt:  KGSSRSRSKKRVCCKRIKRLRKMIPKGESLE-LNGLFRETADYIVWLQMKVKMMQALVHVL
Arabidopsis top hitse value%identityAlignment
AT2G43060.1 ILI1 binding bHLH 13.0e-0444.26Show/hide
Query:  SSRSRSKKR--VCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLN
        S R RS +R  V  +  +RLR ++P G  +E + L  ETA YI  L M+VK+MQ LV  L+
Subjt:  SSRSRSKKR--VCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLN
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators2.9e-0747.54Show/hide
Query:  KGSSRSRSKKRVCCKRIKRLRKMIPKGESLE-LNGLFRETADYIVWLQMKVKMMQALVHVL
        K    SR   R   +R+K L++++P  ++ E L+GLFR+TADYI+ L+MKVK+MQ +V VL
Subjt:  KGSSRSRSKKRVCCKRIKRLRKMIPKGESLE-LNGLFRETADYIVWLQMKVKMMQALVHVL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGAAAAGGGGTCGTCGAGATCGAGGTCGAAGAAGAGGGTTTGTTGTAAGAGGATCAAGAGGCTAAGGAAGATGATACCAAAGGGTGAATCTTTGGAGTTGAATGG
GCTTTTTAGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAAGATGATGCAAGCTTTGGTTCATGTGTTGAATGGGTCTATCAATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGAAAAGGGGTCGTCGAGATCGAGGTCGAAGAAGAGGGTTTGTTGTAAGAGGATCAAGAGGCTAAGGAAGATGATACCAAAGGGTGAATCTTTGGAGTTGAATGG
GCTTTTTAGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAAGATGATGCAAGCTTTGGTTCATGTGTTGAATGGGTCTATCAATGATTGA
Protein sequenceShow/hide protein sequence
MQEKGSSRSRSKKRVCCKRIKRLRKMIPKGESLELNGLFRETADYIVWLQMKVKMMQALVHVLNGSIND