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CmoCh01G003720 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G003720
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTransmembrane protein
Genome locationCmo_Chr01:1810561..1810998
RNA-Seq ExpressionCmoCh01G003720
SyntenyCmoCh01G003720
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607004.1 hypothetical protein SDJN03_00346, partial [Cucurbita argyrosperma subsp. sororia]8.7e-7297.3Show/hide
Query:  MAKPFPSFSNHSYHLPFSSPSLVASIAVLSIFALVIFLCTSSRKSKKPNLLQQRNFVAKVNSNISSRAISIAKMISWRKVEAADEDE---GGGGGGFDLS
        MAKPFPSFSNHSYHLPFSSPSLVASIAVLSIFALVIFLCTSSRKSKKP LLQQRNFVAKVNSNISSRAISIAKMISWRKVEAADEDE   GGGGGGFDLS
Subjt:  MAKPFPSFSNHSYHLPFSSPSLVASIAVLSIFALVIFLCTSSRKSKKPNLLQQRNFVAKVNSNISSRAISIAKMISWRKVEAADEDE---GGGGGGFDLS

Query:  GDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFKSVG
        GDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFKSVG
Subjt:  GDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFKSVG

KAG7036703.1 hypothetical protein SDJN02_00323, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-7298.63Show/hide
Query:  MAKPFPSFSNHSYHLPFSSPSLVASIAVLSIFALVIFLCTSSRKSKKPNLLQQRNFVAKVNSNISSRAISIAKMISWRKVEAADEDE-GGGGGGFDLSGD
        MAKPFPSFSNHSYHLPFSSPSLVASIAVLSIFALVIFLCTSSRKSKKP LLQQRNFVAKVNSNISSRAISIAKMISWRKVEAADEDE GGGGGGFDLSGD
Subjt:  MAKPFPSFSNHSYHLPFSSPSLVASIAVLSIFALVIFLCTSSRKSKKPNLLQQRNFVAKVNSNISSRAISIAKMISWRKVEAADEDE-GGGGGGFDLSGD

Query:  DYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFKSVG
        DYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFKSVG
Subjt:  DYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFKSVG

KGN57848.1 hypothetical protein Csa_010872 [Cucumis sativus]8.0e-4165.13Show/hide
Query:  MAKPFPSFSN--HSYHLPFSSPS----LVASIAVLSIFALVIFLCTSSRKSKKPNLLQQRNFVAKVNSNISSRAISIAKMISWRKVEAA----DEDEGGG
        MA+PFP+ SN  H  HL F S      ++++  +LSIFAL+IFLCTSSRKS K +   + NFV+K+NSNISSRAIS+AKMISWRKVEAA    +E+E  G
Subjt:  MAKPFPSFSN--HSYHLPFSSPS----LVASIAVLSIFALVIFLCTSSRKSKKPNLLQQRNFVAKVNSNISSRAISIAKMISWRKVEAA----DEDEGGG

Query:  GGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK
         GG D    D ++EVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Subjt:  GGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK

TYK22452.1 hypothetical protein E5676_scaffold712G00010 [Cucumis melo var. makuwa]1.8e-3765.33Show/hide
Query:  MAKPFPSFSNHSYH-------LPFSSPSLVASIAVLSIFALVIFLCTSSRKSKKPNLLQQRNFVAKVNSNISSRAISIAKMISWRKVEAADE-DEGGGGG
        MA+PFP+ SN S+H         FS P L  S  +LSIFAL+IFLCTSS KS K +   +  FV+K+NSNISSRAIS+AK+ISWRKVEAADE +E  G G
Subjt:  MAKPFPSFSNHSYH-------LPFSSPSLVASIAVLSIFALVIFLCTSSRKSKKPNLLQQRNFVAKVNSNISSRAISIAKMISWRKVEAADE-DEGGGGG

Query:  GFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK
          D   D  ++EVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Subjt:  GFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK

XP_038906595.1 uncharacterized protein LOC120092546 [Benincasa hispida]5.5e-3467.88Show/hide
Query:  MAKPFPSFSNHSYH-----LPFSSPS---LVASIAVLSIFALVIFLCTSSRKSKKPNLLQQRNFVAKVNSNISSRAISIAKMISWRKVEAAD-EDEGGGG
        MA+ FPS SN S+H     LPFSS +   L++SIAVLSIFALV+FLCTSSRKS K    Q+RNFV+K+NSNISSRAIS+AKMISWRKVEAAD EDE    
Subjt:  MAKPFPSFSNHSYH-----LPFSSPS---LVASIAVLSIFALVIFLCTSSRKSKKPNLLQQRNFVAKVNSNISSRAISIAKMISWRKVEAAD-EDEGGGG

Query:  GGFDLSGDDY---DDEVWRKTIIRGERCRPLEFSGKI
        G  +LSGDD    ++EVWRKTIIRGERCRPLEFS  +
Subjt:  GGFDLSGDDY---DDEVWRKTIIRGERCRPLEFSGKI

TrEMBL top hitse value%identityAlignment
A0A0A0L7R8 Uncharacterized protein3.9e-4165.13Show/hide
Query:  MAKPFPSFSN--HSYHLPFSSPS----LVASIAVLSIFALVIFLCTSSRKSKKPNLLQQRNFVAKVNSNISSRAISIAKMISWRKVEAA----DEDEGGG
        MA+PFP+ SN  H  HL F S      ++++  +LSIFAL+IFLCTSSRKS K +   + NFV+K+NSNISSRAIS+AKMISWRKVEAA    +E+E  G
Subjt:  MAKPFPSFSN--HSYHLPFSSPS----LVASIAVLSIFALVIFLCTSSRKSKKPNLLQQRNFVAKVNSNISSRAISIAKMISWRKVEAA----DEDEGGG

Query:  GGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK
         GG D    D ++EVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Subjt:  GGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK

A0A314V248 Uncharacterized protein7.3e-2449.68Show/hide
Query:  MAKPF-PSFSNHSYHLPFSSPS--LVASIAVLSIFALVIFLCTSSRKSKKPNLLQQR----------NFVAKVNSNISSRAISIAKMISWRKVEAADEDE
        MA+P  PSFS  S+HL F  PS  L A +   S+F+L+IFLC +S KSKK +  ++            F+AK+NS ISS+A+++AKM+SWRK+EA +E  
Subjt:  MAKPF-PSFSNHSYHLPFSSPS--LVASIAVLSIFALVIFLCTSSRKSKKPNLLQQR----------NFVAKVNSNISSRAISIAKMISWRKVEAADEDE

Query:  GGGGGGFDLSGDD-----YDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS
               DL  DD      DD VWRK+II GERC PL FSGKIDYDS+GNL  +S
Subjt:  GGGGGGFDLSGDD-----YDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS

A0A5A7V4T5 Uncharacterized protein1.7e-2577.38Show/hide
Query:  VNSNISSRAISIAKMISWRKVEAADE-DEGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK
        +NSNISSRAIS+AK+ISWRKVEAADE +E  G G  D   D  ++EVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Subjt:  VNSNISSRAISIAKMISWRKVEAADE-DEGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK

A0A5D3DFS8 Uncharacterized protein8.9e-3865.33Show/hide
Query:  MAKPFPSFSNHSYH-------LPFSSPSLVASIAVLSIFALVIFLCTSSRKSKKPNLLQQRNFVAKVNSNISSRAISIAKMISWRKVEAADE-DEGGGGG
        MA+PFP+ SN S+H         FS P L  S  +LSIFAL+IFLCTSS KS K +   +  FV+K+NSNISSRAIS+AK+ISWRKVEAADE +E  G G
Subjt:  MAKPFPSFSNHSYH-------LPFSSPSLVASIAVLSIFALVIFLCTSSRKSKKPNLLQQRNFVAKVNSNISSRAISIAKMISWRKVEAADE-DEGGGGG

Query:  GFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK
          D   D  ++EVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Subjt:  GFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK

A0A5E4G755 PREDICTED: LOC1002770031.3e-2552.67Show/hide
Query:  MAKPF-PSFSNHSYHL-PFSSPSLVASIAVLSIFALVIFLCTSSRKSKKPNLLQQR----------NFVAKVNSNISSRAISIAKMISWRKVEAADEDEG
        MA+P  PSFS  S+HL    S  L A I   S+F+LVIFLC +SRKSKK +  ++            F+AK+NS ISS+A+++AKM+SWRK+EA +ED+ 
Subjt:  MAKPF-PSFSNHSYHL-PFSSPSLVASIAVLSIFALVIFLCTSSRKSKKPNLLQQR----------NFVAKVNSNISSRAISIAKMISWRKVEAADEDEG

Query:  GGGGGFDLSGDDYDDE-VWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS
              D   DD+ DE VWRK+II GERC PL FSGKIDYDSDGNL  +S
Subjt:  GGGGGFDLSGDDYDDE-VWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49000.1 unknown protein1.7e-0453.33Show/hide
Query:  VWRKTIIRGERCRPLEFSGKIDYDSDGNLL
        +W++ I+ G +C PL+FSG I YDS+G LL
Subjt:  VWRKTIIRGERCRPLEFSGKIDYDSDGNLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGCCGTTCCCAAGCTTTTCAAATCACTCTTATCATCTTCCATTTTCCTCACCATCGCTCGTCGCTTCAATCGCAGTGCTCTCTATCTTCGCGCTCGTG
ATTTTCCTCTGCACTTCCTCGAGAAAATCGAAGAAACCGAACCTGTTGCAGCAGAGAAACTTTGTGGCGAAGGTTAACAGTAACATCAGTTCTCGAGCGATTTCC
ATCGCGAAGATGATTTCGTGGCGGAAAGTCGAGGCGGCGGATGAAGATGAAGGAGGAGGAGGAGGAGGTTTTGATTTGAGTGGAGATGATTATGATGATGAGGTT
TGGAGGAAGACGATTATCAGAGGCGAACGGTGTCGTCCGCTTGAATTTTCAGGCAAAATTGATTATGATTCTGATGGTAATTTGTTGTGTGATTCGAAGAGGGAG
TTTAAATCCGTTGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAGCCGTTCCCAAGCTTTTCAAATCACTCTTATCATCTTCCATTTTCCTCACCATCGCTCGTCGCTTCAATCGCAGTGCTCTCTATCTTCGCGCTCGTG
ATTTTCCTCTGCACTTCCTCGAGAAAATCGAAGAAACCGAACCTGTTGCAGCAGAGAAACTTTGTGGCGAAGGTTAACAGTAACATCAGTTCTCGAGCGATTTCC
ATCGCGAAGATGATTTCGTGGCGGAAAGTCGAGGCGGCGGATGAAGATGAAGGAGGAGGAGGAGGAGGTTTTGATTTGAGTGGAGATGATTATGATGATGAGGTT
TGGAGGAAGACGATTATCAGAGGCGAACGGTGTCGTCCGCTTGAATTTTCAGGCAAAATTGATTATGATTCTGATGGTAATTTGTTGTGTGATTCGAAGAGGGAG
TTTAAATCCGTTGGATAA
Protein sequenceShow/hide protein sequence
MAKPFPSFSNHSYHLPFSSPSLVASIAVLSIFALVIFLCTSSRKSKKPNLLQQRNFVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGGGGFDLSGDDYDDEV
WRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFKSVG