CuGenDBv2

Gene ID	CmoCh01G004340
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Transcription elongation factor SPT4 homolog
Genome location	Cmo_Chr01:2114829..2120379
RNA-Seq Expression	CmoCh01G004340
Synteny	CmoCh01G004340
Gene Ontology terms	GO:0006325 - chromatin organization (biological process) GO:0006397 - mRNA processing (biological process) GO:0006413 - translational initiation (biological process) GO:0006414 - translational elongation (biological process) GO:0032786 - positive regulation of DNA-templated transcription, elongation (biological process) GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process) GO:0032044 - DSIF complex (cellular component) GO:0000993 - RNA polymerase II complex binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function) GO:0003746 - translation elongation factor activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR009287 - Transcription initiation Spt4 IPR022800 - Spt4/RpoE2 zinc finger IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4 IPR038510 - Spt4 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048459.1 transcription elongation factor SPT4-like protein 2 [Cucumis melo var. makuwa]

2.2e-34

97.22

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Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        D FRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

XP_008461561.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo]

1.0e-34

92.31

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Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE
        D FRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ +C  E
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE

XP_022143259.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia]

2.9e-34

91.03

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Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE
        D FRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRF PGCYTLAVSEALPEDLQ +C  E
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE

XP_022948256.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata]

2.0e-35

93.59

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Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE
        D FRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ +C  E
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE

XP_038881174.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida]

1.0e-34

92.31

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Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE
        D FRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ +C  E
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9Q3 Transcription elongation factor SPT4 homolog

4.8e-35

92.31

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Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE
        D FRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ +C  E
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE

A0A1S3CFH1 Transcription elongation factor SPT4 homolog

4.8e-35

92.31

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Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE
        D FRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ +C  E
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE

A0A5A7U4T8 Transcription elongation factor SPT4-like protein 2

1.1e-34

97.22

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Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        D FRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

A0A6J1G8V8 Transcription elongation factor SPT4 homolog

9.7e-36

93.59

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Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE
        D FRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ +C  E
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE

A0A6J1K6X8 Transcription elongation factor SPT4 homolog

9.7e-36

93.59

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Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE
        D FRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ +C  E
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE

SwissProt top hits

e value

%identity

Alignment

P63271 Transcription elongation factor SPT4-A

9.4e-12

37.35

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Query:  DLFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDL--QVCNHEVAY
        D F   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +  ++ +  VAY
Subjt:  DLFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDL--QVCNHEVAY

Q5RFH5 Transcription elongation factor SPT4

7.2e-12

37.35

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Query:  DLFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDL--QVCNHEVAY
        D F   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +  ++ +  VAY
Subjt:  DLFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDL--QVCNHEVAY

Q6DGQ0 Transcription elongation factor SPT4

2.5e-12

44.93

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Query:  DLFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALP
        D F   GC+NC  + +M  + E V ECT+ +F+G+I++M P  SW A+W RIG F PG Y + V+  LP
Subjt:  DLFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALP

Q8LCQ3 Transcription elongation factor SPT4 homolog 1

1.7e-32

81.94

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Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        D FR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+FAPGCYTLAVSEALPE++Q
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Q94C60 Transcription elongation factor SPT4 homolog 2

1.1e-33

80.77

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Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE
        D FR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+FAPGCYTLAVSE LPE++Q +C  E
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE

Arabidopsis top hits

e value

%identity

Alignment

AT5G08565.1 Transcription initiation Spt4-like protein

1.2e-33

81.94

Show/hide

Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        D FR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+FAPGCYTLAVSEALPE++Q
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

AT5G08565.2 Transcription initiation Spt4-like protein

3.5e-22

62.5

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Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        D FR+SGCENCPFFK+++DHER+V+ TTPNFNG +S            L  G+FAPGCYTLAVSEALPE++Q
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

AT5G63670.1 SPT4 homolog 2

8.1e-35

80.77

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Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE
        D FR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+FAPGCYTLAVSE LPE++Q +C  E
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-VCNHE

AT5G63670.2 SPT4 homolog 2

9.3e-23

86.27

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Query:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRI
        D FR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRI
Subjt:  DLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRI

Sequences

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CDS sequence

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ATGCACTCACACACTCTTCTTTCTTTTGCTTCCAAATACACAAAAAATCAAAAGAATGAAGAAAACAGGTCTTTGCGTTCTGGTGGCGGTGGCGATGGTGGCAGTTCTCA
CCGGAGCTCGTCTCGGGGAAGCAGTGACTTGCAACCCCATGGATCTGAGCTCATGTGTCGCTGCAATCACGTCGTCGGAGGCGCCTACACCGACTTGCTGCGCGAAGTTG
AAGGAACAACAGTCATGCTATTGTGGGTACCTAAAAGATCCAAAGTTCAAACCTTATGTGACATCTCCTCGCGTCAGAGTGGTTGCGTCCATCTGCCGTGTTGCTGTCCC
AACCTGCTAGAAACCATGCTCCCCATAATGCAAATGGAAGTTGGTACCGTGCCTATTGTTACGGCCCCTGAAGCTCCGACTTCACCAGGTACCGTTCCTGTTATTACAGC
CCCTGAAGCTCCAACTTCATTAGCCCCTGAAGCTTCGATTTCACCAAGTATCGTTCCTATTGTTACGATTCCCAAAGCTCCGACGACTTCACCAGGTACCGTTCCTATTG
TTACAACTCCTAAAGCTCCAACGACTTCACCAGGTATTGTTCCAATTGTTACGGTCCCTAAAACTCCGAATTCACTAGGTACCATTCCGTATGTTACTGCCCCTAAAGCT
CCGGCAACTCCAAAAGGAATTTCTATTTCTTCTTCTTCCTCCTCAATCGGCACGCTTTCTTCCCAAAATTTCTTTTGCTGCCTAGTTTTTGCACCAAATCTCATTGACGC
CGGCCACCGGCGGTACAGTCTCCCCCGACCATATATCTTTAGTAATCGGCAGAAGGATCTATTTCGTGAATCGGGCTGTGAGAATTGTCCCTTCTTCAAGATGGACGAAG
ACCACGAGCGTGTTGTAGAGTGCACTACTCCTAATTTTAATGGGATAATTTCTGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTTGCC
CCTGGTTGTTATACTCTAGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGGTTTGCAATCATGAAGTAGCATATTTGTTTACGTGTTCTGTTCTTCTGTGTTTATCATC
TACCAGAGCCATCAGGAAAATCCATGCCCTTTGA

mRNA sequence

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Protein sequence

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MHSHTLLSFASKYTKNQKNEENRSLRSGGGGDGGSSHRSSSRGSSDLQPHGSELMCRCNHVVGGAYTDLLREVEGTTVMLLWVPKRSKVQTLCDISSRQSGCVHLPCCCP
NLLETMLPIMQMEVGTVPIVTAPEAPTSPGTVPVITAPEAPTSLAPEASISPSIVPIVTIPKAPTTSPGTVPIVTTPKAPTTSPGIVPIVTVPKTPNSLGTIPYVTAPKA
PATPKGISISSSSSSIGTLSSQNFFCCLVFAPNLIDAGHRRYSLPRPYIFSNRQKDLFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFA
PGCYTLAVSEALPEDLQVCNHEVAYLFTCSVLLCLSSTRAIRKIHAL

CmoCh01G004340 (gene) of Cucurbita moschata (Rifu) v1 genome