; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G004660 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G004660
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionbiogenesis of lysosome-related organelles complex 1 subunit 2
Genome locationCmo_Chr01:2229383..2231144
RNA-Seq ExpressionCmoCh01G004660
SyntenyCmoCh01G004660
Gene Ontology termsGO:0006865 - amino acid transport (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0015293 - symporter activity (molecular function)
InterPro domainsIPR019269 - Biogenesis of lysosome-related organelles complex-1, subunit 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607085.1 Biogenesis of lysosome-related organelles complex 1 subunit 2, partial [Cucurbita argyrosperma subsp. sororia]2.6e-5699.19Show/hide
Query:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
        MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMN+RVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
Subjt:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI

Query:  SMLDKHISMLESKVLSVCQNSAT
        SMLDKHISMLESKVLSVCQNSAT
Subjt:  SMLDKHISMLESKVLSVCQNSAT

KAG7036775.1 Kanadaptin [Cucurbita argyrosperma subsp. argyrosperma]2.9e-5295.08Show/hide
Query:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
        MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMN+RVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
Subjt:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI

Query:  SMLDKHISMLESKVLSVCQNSA
        SMLDKHISMLESKVLS+    A
Subjt:  SMLDKHISMLESKVLSVCQNSA

XP_022949044.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita moschata]1.5e-56100Show/hide
Query:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
        MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
Subjt:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI

Query:  SMLDKHISMLESKVLSVCQNSAT
        SMLDKHISMLESKVLSVCQNSAT
Subjt:  SMLDKHISMLESKVLSVCQNSAT

XP_023525241.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita pepo subsp. pepo]5.7e-5699.19Show/hide
Query:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
        MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLG+VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
Subjt:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI

Query:  SMLDKHISMLESKVLSVCQNSAT
        SMLDKHISMLESKVLSVCQNSAT
Subjt:  SMLDKHISMLESKVLSVCQNSAT

XP_038880795.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida]3.0e-4990.91Show/hide
Query:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
        MA+KEEQ  PN DELAESLNEFFTSVSEMIKSDLLGSSNQLALLE+MNLRVAEEYKG GDVASGMRVFVEQLK+KSGGFDEYI+QIEKIE+QVTEFEAVI
Subjt:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI

Query:  SMLDKHISMLESKVLSVCQNS
        SMLDKH+SMLESKVLSVCQN+
Subjt:  SMLDKHISMLESKVLSVCQNS

TrEMBL top hitse value%identityAlignment
A0A0A0KW18 Uncharacterized protein1.9e-4990.08Show/hide
Query:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
        MA+KEE +LPN D+LAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKG GDVASGMRVFVEQLK+KSGGFDEYINQIEKIE+QVTEFEAVI
Subjt:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI

Query:  SMLDKHISMLESKVLSVCQNS
        SMLDKH+SMLESKVLSVCQN+
Subjt:  SMLDKHISMLESKVLSVCQNS

A0A1S3C0T0 biogenesis of lysosome-related organelles complex 1 subunit 22.1e-4889.26Show/hide
Query:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
        MA+KEE +LPN DELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MN RVAEEYKG GDVASGMRVFVEQLK+KSGGFDEYI+QIEKIE+QVTEFEAVI
Subjt:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI

Query:  SMLDKHISMLESKVLSVCQNS
        SMLDKH+SMLESKVLSVCQN+
Subjt:  SMLDKHISMLESKVLSVCQNS

A0A6J1GBP4 biogenesis of lysosome-related organelles complex 1 subunit 27.3e-57100Show/hide
Query:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
        MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
Subjt:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI

Query:  SMLDKHISMLESKVLSVCQNSAT
        SMLDKHISMLESKVLSVCQNSAT
Subjt:  SMLDKHISMLESKVLSVCQNSAT

A0A6J1KEZ0 biogenesis of lysosome-related organelles complex 1 subunit 27.3e-57100Show/hide
Query:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
        MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
Subjt:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI

Query:  SMLDKHISMLESKVLSVCQNSAT
        SMLDKHISMLESKVLSVCQNSAT
Subjt:  SMLDKHISMLESKVLSVCQNSAT

A0A6P5ST25 biogenesis of lysosome-related organelles complex 1 subunit 25.4e-3673.33Show/hide
Query:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
        MA KEEQ     DELAESLN+ FTSVS M+KS+L GS+N L LLEKMNLRVAEEYKG GDVASG+ VFVEQLK+KSG F+EY+ QI+ IE QVTEFEAVI
Subjt:  MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI

Query:  SMLDKHISMLESKVLSVCQN
        S+LD+++SMLESKV SV QN
Subjt:  SMLDKHISMLESKVLSVCQN

SwissProt top hitse value%identityAlignment
F4K657 Biogenesis of lysosome-related organelles complex 1 subunit 25.0e-3164.71Show/hide
Query:  DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLES
        D+LAESL   FTSVS M+KS+L G++N L LLEKMNLRVA EY  +GDVA+G+RVF EQ+K+KSGG DE++ Q++ IE QV+EFEAVIS+LD+++S+LES
Subjt:  DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLES

Query:  KV
        K+
Subjt:  KV

Q32WR5 Biogenesis of lysosome-related organelles complex-1 subunit 23.6e-0528.44Show/hide
Query:  EEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLD
        EE + P   ++ E   + F+ ++  +  +L  +S    LLE MN   + +Y  + D+A  +   ++ L  K  G   Y++QI  IE QV   E     LD
Subjt:  EEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLD

Query:  KHISMLESK
         +   LE+K
Subjt:  KHISMLESK

Q4R7C8 Biogenesis of lysosome-related organelles complex 1 subunit 22.1e-0528.44Show/hide
Query:  EEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLD
        EE + P   ++ E   + F+ ++  +  +L  +S    LLE MN   + +Y  + D+A  +   ++ L  K  G   Y++QI  IE QV   E     LD
Subjt:  EEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLD

Query:  KHISMLESK
         +   LE+K
Subjt:  KHISMLESK

Q54Y67 Biogenesis of lysosome-related organelles complex 1 subunit 23.4e-1133.63Show/hide
Query:  LPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHIS
        LP +++L  S  E FT VS  IKS+L  + +   LL +MN   + +Y+ + +V  G+ VF+  LK K   F  Y ++I +++  VT+ E  + +LD++  
Subjt:  LPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHIS

Query:  MLESKVLSVCQNS
         LE KV ++ ++S
Subjt:  MLESKVLSVCQNS

Q6QNY1 Biogenesis of lysosome-related organelles complex 1 subunit 22.1e-0528.44Show/hide
Query:  EEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLD
        EE + P   ++ E   + F+ ++  +  +L  +S    LLE MN   + +Y  + D+A  +   ++ L  K  G   Y++QI  IE QV   E     LD
Subjt:  EEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLD

Query:  KHISMLESK
         +   LE+K
Subjt:  KHISMLESK

Arabidopsis top hitse value%identityAlignment
AT5G49550.1 Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1.3.6e-3264.71Show/hide
Query:  DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLES
        D+LAESL   FTSVS M+KS+L G++N L LLEKMNLRVA EY  +GDVA+G+RVF EQ+K+KSGG DE++ Q++ IE QV+EFEAVIS+LD+++S+LES
Subjt:  DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLES

Query:  KV
        K+
Subjt:  KV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAGAAAGAGGAACAACAATTGCCGAACAGTGACGAGCTTGCCGAGTCGCTCAACGAATTCTTCACCAGTGTATCCGAAATGATCAAATCGGATCTTCTTGGATC
AAGTAATCAGCTGGCACTTTTAGAGAAAATGAATCTCAGGGTGGCAGAAGAGTATAAAGGTCTTGGCGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAATTGAAGG
CAAAGAGTGGTGGCTTTGATGAGTACATCAACCAGATTGAGAAAATAGAAAATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATATTTCCATGCTG
GAATCTAAAGTGTTGTCCGTTTGTCAAAACTCGGCTACATGA
mRNA sequenceShow/hide mRNA sequence
AAGATTATTAGAAATTTAGTTAAATTATAAGTTTTTTCGCAAAAATCCCGTAGCAGTTCTTTGTTCCGACGAAGCGACGGCGAGTGATTTCAATTCCCGGGAAGGTTTTG
CGGCCTCAGGTACCGTATTTTGTAAGCGTCACCGTTTTGATCTTATTTCATGGCCGAGAAAGAGGAACAACAATTGCCGAACAGTGACGAGCTTGCCGAGTCGCTCAACG
AATTCTTCACCAGTGTATCCGAAATGATCAAATCGGATCTTCTTGGATCAAGTAATCAGCTGGCACTTTTAGAGAAAATGAATCTCAGGGTGGCAGAAGAGTATAAAGGT
CTTGGCGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAATTGAAGGCAAAGAGTGGTGGCTTTGATGAGTACATCAACCAGATTGAGAAAATAGAAAATCAGGTGAC
TGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATATTTCCATGCTGGAATCTAAAGTGTTGTCCGTTTGTCAAAACTCGGCTACATGAATGAATTCCTTTGTTTGTG
TTCAAAATTCAGAATGGTTCCTTTCAGAATATTTTTGCTTCTATATTGCTCATGGTGTTGAATCTTTTACAATATCTCATTCACTGGCAGTTGATGG
Protein sequenceShow/hide protein sequence
MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISML
ESKVLSVCQNSAT