; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G005030 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G005030
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRNA helicase
Genome locationCmo_Chr01:2428105..2429831
RNA-Seq ExpressionCmoCh01G005030
SyntenyCmoCh01G005030
Gene Ontology termsGO:0000965 - mitochondrial RNA 3'-end processing (biological process)
GO:0006401 - RNA catabolic process (biological process)
GO:0009939 - positive regulation of gibberellic acid mediated signaling pathway (biological process)
GO:0010929 - positive regulation of auxin mediated signaling pathway (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0080038 - positive regulation of cytokinin-activated signaling pathway (biological process)
GO:1901002 - positive regulation of response to salt stress (biological process)
GO:1902584 - positive regulation of response to water deprivation (biological process)
GO:0042645 - mitochondrial nucleoid (cellular component)
GO:0045025 - mitochondrial degradosome (cellular component)
GO:0003678 - DNA helicase activity (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582314.1 ATP-dependent RNA helicase SUV3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.0e-36100Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ

KAG7018725.1 ATP-dependent RNA helicase SUV3, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-36100Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ

XP_022955799.1 DExH-box ATP-dependent RNA helicase DExH16, mitochondrial isoform X2 [Cucurbita moschata]1.0e-36100Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ

XP_022979543.1 ATP-dependent RNA helicase SUV3, mitochondrial isoform X1 [Cucurbita maxima]1.0e-36100Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ

XP_022979544.1 ATP-dependent RNA helicase SUV3, mitochondrial isoform X2 [Cucurbita maxima]1.0e-36100Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ

TrEMBL top hitse value%identityAlignment
A0A6J1GV03 RNA helicase5.0e-37100Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ

A0A6J1GXA9 RNA helicase5.0e-37100Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ

A0A6J1IWJ9 RNA helicase5.0e-37100Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ

A0A6J1IWX3 RNA helicase5.0e-37100Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ

A0A7N2LVS7 Uncharacterized protein2.7e-3590.12Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQAC
        GKTHNALK+L+SS SG+YCGPLRLLAWEV+KRLNKAK+PCDLITGQEREEVDGAKHKAVTVEMADVTS+Y CAVIDEIQAC
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQAC

SwissProt top hitse value%identityAlignment
A4IG62 ATP-dependent RNA helicase SUPV3L1, mitochondrial7.2e-1753.01Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVD----GAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKT++A+KR   + SG+YCGPL+LLA E+ ++ N A +PCDL+TG+ER  VD     + H A T+EM  VT+ Y  AVIDEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVD----GAKHKAVTVEMADVTSNYSCAVIDEIQ

Q10D00 ATP-dependent RNA helicase SUV3, mitochondrial3.9e-3178.48Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKTHNALKRLE+S SG+YCGPLRLLA EV++RLNKA +PC+LITGQEREE++GAKH +VTVEMAD+T+ Y CAVIDEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ

Q5ZJT0 ATP-dependent RNA helicase SUPV3L1, mitochondrial3.2e-1750.6Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQER----EEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKT++A++R  S+ SG+YCGPL+LLA E+ ++ N A +PCDL+TG+ER    E+   A H A T+EM    + Y  AVIDEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQER----EEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ

Q8IYB8 ATP-dependent RNA helicase SUPV3L1, mitochondrial9.4e-1751.81Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVD----GAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKT++A+++  S+ SG+YCGPL+LLA E+ ++ N A +PCDL+TG+ER  V      A H + TVEM  VT+ Y  AVIDEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVD----GAKHKAVTVEMADVTSNYSCAVIDEIQ

Q9SMX1 DExH-box ATP-dependent RNA helicase DExH16, mitochondrial8.8e-3178.48Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKT++ALK LE S SG+YCGPLRLLAWEV+KRLNKA +PCDLITGQE++ V+GA HKAVTVEMADVTS Y CA+IDEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ

Arabidopsis top hitse value%identityAlignment
AT4G14790.1 ATP-dependent RNA helicase, mitochondrial (SUV3)6.2e-3278.48Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKT++ALK LE S SG+YCGPLRLLAWEV+KRLNKA +PCDLITGQE++ V+GA HKAVTVEMADVTS Y CA+IDEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ

AT5G39840.1 ATP-dependent RNA helicase, mitochondrial, putative1.6e-1651.9Show/hide
Query:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ
        GKT+NAL+R   + +GLYC PLRLLA EV  ++N   I C L+TGQE++ V  A H + TVEM      Y  AV+DEIQ
Subjt:  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACCTGGCAAAACTCACAATGCTTTGAAGAGGCTTGAATCAAGTGATTCTGGTTTATATTGTGGTCCCCTGAGACTGTTGGCCTGGGAAGTCTCAAAGCGGTTGAA
TAAGGCTAAAATCCCTTGTGATCTGATCACTGGACAAGAAAGAGAGGAAGTTGATGGTGCAAAACATAAGGCTGTTACTGTTGAGATGGCTGATGTAACCTCCAACTACA
GTTGTGCTGTTATCGATGAAATTCAGGCATGTTCACCACAGTTCCCTCCTAGGAATTTGAATCACCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAACCTGGCAAAACTCACAATGCTTTGAAGAGGCTTGAATCAAGTGATTCTGGTTTATATTGTGGTCCCCTGAGACTGTTGGCCTGGGAAGTCTCAAAGCGGTTGAA
TAAGGCTAAAATCCCTTGTGATCTGATCACTGGACAAGAAAGAGAGGAAGTTGATGGTGCAAAACATAAGGCTGTTACTGTTGAGATGGCTGATGTAACCTCCAACTACA
GTTGTGCTGTTATCGATGAAATTCAGGCATGTTCACCACAGTTCCCTCCTAGGAATTTGAATCACCATTGA
Protein sequenceShow/hide protein sequence
MKPGKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQACSPQFPPRNLNHH