; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G005860 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G005860
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTHO complex subunit 4A
Genome locationCmo_Chr01:2970310..2972669
RNA-Seq ExpressionCmoCh01G005860
SyntenyCmoCh01G005860
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR025715 - Chromatin target of PRMT1 protein, C-terminal
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036889.1 THO complex subunit 4A [Cucurbita argyrosperma subsp. argyrosperma]2.5e-12498.76Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRF NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRG-GRALGRNRGGG
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRG GRALGRNRGGG
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRG-GRALGRNRGGG

Query:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
        RGRGPGRGGRGRGNGRGGGEKLSAEDLDADL+KYHEEAMQIN
Subjt:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN

XP_022948705.1 THO complex subunit 4A-like isoform X1 [Cucurbita moschata]1.0e-12599.59Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRG-GRALGRNRGGG
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRG GRALGRNRGGG
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRG-GRALGRNRGGG

Query:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
        RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
Subjt:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN

XP_022948706.1 THO complex subunit 4A-like isoform X2 [Cucurbita moschata]4.2e-127100Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGR
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGR

Query:  GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
Subjt:  GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN

XP_022997830.1 THO complex subunit 4A-like isoform X2 [Cucurbita maxima]1.7e-12598.76Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRF NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGR
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLE+VGANIVTPVLPASSNPNFGNSSGFLRGGRALGRN+GGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGR

Query:  GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
Subjt:  GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN

XP_023523169.1 THO complex subunit 4A-like isoform X3 [Cucurbita pepo subsp. pepo]1.7e-12599.17Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRF NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGR
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPA SNPNFGNSSGFLRGGRALGRNRGGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGR

Query:  GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
Subjt:  GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN

TrEMBL top hitse value%identityAlignment
A0A6J1G9Y5 THO complex subunit 4A-like isoform X22.0e-127100Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGR
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGR

Query:  GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
Subjt:  GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN

A0A6J1GAN0 THO complex subunit 4A-like isoform X15.0e-12699.59Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRG-GRALGRNRGGG
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRG GRALGRNRGGG
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRG-GRALGRNRGGG

Query:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
        RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
Subjt:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN

A0A6J1HLI4 THO complex subunit 4B-like1.1e-10988.43Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        M +PLD SLDDIIKNNKKSGSSNFRGRGGASSGP PSRRF NRGLNRAAPYS A+APET WSHD+FVDHG AYPS PARAS IETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGR
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGK MKLEIVG NIVTP +PAS+N NFGN +GF RGG  LGRNRGGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGR

Query:  GRGPGRGGRGRG-NGRGGGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRGGRGRG + RG GEKLSAEDLDADLEKYHEEAMQIN
Subjt:  GRGPGRGGRGRG-NGRGGGEKLSAEDLDADLEKYHEEAMQIN

A0A6J1KAZ3 THO complex subunit 4A-like isoform X28.4e-12698.76Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRF NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGR
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLE+VGANIVTPVLPASSNPNFGNSSGFLRGGRALGRN+GGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGR

Query:  GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
Subjt:  GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN

A0A6J1KCN1 THO complex subunit 4A-like isoform X12.1e-12498.35Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRF NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRG-GRALGRNRGGG
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLE+VGANIVTPVLPASSNPNFGNSSGFLRG GRALGRN+GGG
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRG-GRALGRNRGGG

Query:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
        RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
Subjt:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN

SwissProt top hitse value%identityAlignment
B5FXN8 THO complex subunit 42.6e-3945.95Show/hide
Query:  MVDPLDTSLDDIIKNNKKS-----GSSNFRGRGGASSGPAPSR-----------RFYNR-------GLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHP
        M D +D SLDDIIK N+       G    RGRGG + G  P R              NR       G NR APYSR K     W HDLF D G       
Subjt:  MVDPLDTSLDDIIKNNKKS-----GSSNFRGRGGASSGPAPSR-----------RFYNR-------GLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHP

Query:  ARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNP
           + +ETG KL VSNLD+GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA+V F R+ADAL A+K+YN V LDG+PM +++V + I T   PA S  
Subjt:  ARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNP

Query:  NFGNSSGFLRGGRALGRNRGGGRGRGP--GRGGRGRGNGRGGGEKLSAEDLDADLEKYH
           N  G  R    LG   GGG  RG   G  GRGRG GR   ++LSAE+LDA L+ Y+
Subjt:  NFGNSSGFLRGGRALGRNRGGGRGRGP--GRGGRGRGNGRGGGEKLSAEDLDADLEKYH

O08583 THO complex subunit 42.2e-3844.4Show/hide
Query:  MVDPLDTSLDDIIKNNKKS----GSSNFRGRGGASSG---------------------PAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPS
        M D +D SLDDIIK N+      G    RGR G+  G                     PA +R     G NR APYSR K     W HDLF D G     
Subjt:  MVDPLDTSLDDIIKNNKKS----GSSNFRGRGGASSG---------------------PAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPS

Query:  HPARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASS
             + +ETG KL VSNLD+GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA+V F R+ADAL A+K+YN V LDG+PM +++V + I T   PA S
Subjt:  HPARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASS

Query:  NPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYH
            G +     GG   G  R G RG   G  GRGRG GR   ++LSAE+LDA L+ Y+
Subjt:  NPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYH

Q6NQ72 THO complex subunit 4D3.7e-3841.24Show/hide
Query:  MVDPLDTSLDDIIKNNK--KSGSSNF-----RGRGGASSGPAPSRRFYNRGLNRAAPYSRAK----APETPWSHDLFVDHGVAYPSHPARASTIETGTKL
        M   L+ +LD+I+K  K  +SG         RGRGG   G  P+RR       R + ++  K        PW   LF D         A AS +E GT+L
Subjt:  MVDPLDTSLDDIIKNNK--KSGSSNF-----RGRGGASSGPAPSRRFYNRGLNRAAPYSRAK----APETPWSHDLFVDHGVAYPSHPARASTIETGTKL

Query:  YVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNF----------
        +V+NLD GV+NEDI+ELFSE+G+++RY+I+YDK+GR  GTAEVV+ R++DA  A+K+YNNV LDG+PM+LEI+G N  +   P S   N           
Subjt:  YVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNF----------

Query:  --------GNSSGFLRGGR---------------------ALGRNRGGGRGRGPGRGGRGRGNGRGGGEK---LSAEDLDADLEKYHEEAM
                G   G +RGGR                      +   RGG R RG G GGRGRG GRG G+K    SA DLD DLE YH +AM
Subjt:  --------GNSSGFLRGGR---------------------ALGRNRGGGRGRGPGRGGRGRGNGRGGGEK---LSAEDLDADLEKYHEEAM

Q8L719 THO complex subunit 4B3.5e-6054.55Show/hide
Query:  LDTSLDDIIKNNKK----------SGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSR----AKAPETPWSHDLFVDH---GVAYPSHPAR----ASTI
        LD SLDDIIK+N+K           G +N  GRGG+ S   PSRRF NR   R APYSR     +A +  W +D+F        A+  H        S+I
Subjt:  LDTSLDDIIKNNKK----------SGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSR----AKAPETPWSHDLFVDH---GVAYPSHPAR----ASTI

Query:  ETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLP-----------
        ETGTKLY+SNLDYGVSNEDIKELFSEVGDLKRY I+YD+SGRSKGTAEVVFSR+ DALAA+KRYNNVQLDGK MK+EIVG N+  P LP           
Subjt:  ETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLP-----------

Query:  ----ASSNPNF-----GNSSGFLRG---GRALGRNRGGGRGRG---PGRGGRGRG----NGRGGGEKLSAEDLDADLEKYHEEAMQ
             + N NF     GN +G  RG   G  +GR RGGG G G    GRG RGRG     GRG  E +SAEDLDA+L+KYH+EAM+
Subjt:  ----ASSNPNF-----GNSSGFLRG---GRALGRNRGGGRGRG---PGRGGRGRG----NGRGGGEKLSAEDLDADLEKYHEEAMQ

Q8L773 THO complex subunit 4A1.3e-6260.33Show/hide
Query:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFY-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED
        LD SLDD+I  N+KS       RG G+ SGP P+RR   NR   R+APY  AKAPE+ W HD+F D    + S  + A  IETGTKLY+SNLDYGV NED
Subjt:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFY-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED

Query:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGF-LRGGRAL-GRNRGGGR
        IKELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGKPMK+EIVG N+ T   P S  P  GNS+G   RGG+   G+ RGGGR
Subjt:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGF-LRGGRAL-GRNRGGGR

Query:  -GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
         G G G GGRGR  G+G  EK+SAEDLDADL+KYH   M+ N
Subjt:  -GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN

Arabidopsis top hitse value%identityAlignment
AT5G02530.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.5e-6154.55Show/hide
Query:  LDTSLDDIIKNNKK----------SGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSR----AKAPETPWSHDLFVDH---GVAYPSHPAR----ASTI
        LD SLDDIIK+N+K           G +N  GRGG+ S   PSRRF NR   R APYSR     +A +  W +D+F        A+  H        S+I
Subjt:  LDTSLDDIIKNNKK----------SGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSR----AKAPETPWSHDLFVDH---GVAYPSHPAR----ASTI

Query:  ETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLP-----------
        ETGTKLY+SNLDYGVSNEDIKELFSEVGDLKRY I+YD+SGRSKGTAEVVFSR+ DALAA+KRYNNVQLDGK MK+EIVG N+  P LP           
Subjt:  ETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLP-----------

Query:  ----ASSNPNF-----GNSSGFLRG---GRALGRNRGGGRGRG---PGRGGRGRG----NGRGGGEKLSAEDLDADLEKYHEEAMQ
             + N NF     GN +G  RG   G  +GR RGGG G G    GRG RGRG     GRG  E +SAEDLDA+L+KYH+EAM+
Subjt:  ----ASSNPNF-----GNSSGFLRG---GRALGRNRGGGRGRG---PGRGGRGRG----NGRGGGEKLSAEDLDADLEKYHEEAMQ

AT5G02530.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.5e-6154.93Show/hide
Query:  LDTSLDDIIKNNKK----------SGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSR----AKAPETPWSHDLFVDH---GVAYPSHPAR----ASTI
        LD SLDDIIK+N+K           G +N  GRGG+ S   PSRRF NR   R APYSR     +A +  W +D+F        A+  H        S+I
Subjt:  LDTSLDDIIKNNKK----------SGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSR----AKAPETPWSHDLFVDH---GVAYPSHPAR----ASTI

Query:  ETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLP-----------
        ETGTKLY+SNLDYGVSNEDIKELFSEVGDLKRY I+YD+SGRSKGTAEVVFSR+ DALAA+KRYNNVQLDGK MK+EIVG N+  P LP           
Subjt:  ETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLP-----------

Query:  ----ASSNPNF-----GNSSGFLRG-GRALGRNRGGGRGRG---PGRGGRGRG----NGRGGGEKLSAEDLDADLEKYHEEAMQ
             + N NF     GN +G  RG G  +GR RGGG G G    GRG RGRG     GRG  E +SAEDLDA+L+KYH+EAM+
Subjt:  ----ASSNPNF-----GNSSGFLRG-GRALGRNRGGGRGRG---PGRGGRGRG----NGRGGGEKLSAEDLDADLEKYHEEAMQ

AT5G59950.1 RNA-binding (RRM/RBD/RNP motifs) family protein9.1e-6460.33Show/hide
Query:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFY-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED
        LD SLDD+I  N+KS       RG G+ SGP P+RR   NR   R+APY  AKAPE+ W HD+F D    + S  + A  IETGTKLY+SNLDYGV NED
Subjt:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFY-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED

Query:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGF-LRGGRAL-GRNRGGGR
        IKELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGKPMK+EIVG N+ T   P S  P  GNS+G   RGG+   G+ RGGGR
Subjt:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGF-LRGGRAL-GRNRGGGR

Query:  -GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
         G G G GGRGR  G+G  EK+SAEDLDADL+KYH   M+ N
Subjt:  -GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN

AT5G59950.3 RNA-binding (RRM/RBD/RNP motifs) family protein2.5e-6159.5Show/hide
Query:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFY-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED
        LD SLDD+I  N+KS       RG G+ SGP P+RR   NR   R+APY    APE+ W HD+F D    + S  + A  IETGTKLY+SNLDYGV NED
Subjt:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFY-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED

Query:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGF-LRGGRAL-GRNRGGGR
        IKELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGKPMK+EIVG N+ T   P S  P  GNS+G   RGG+   G+ RGGGR
Subjt:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGF-LRGGRAL-GRNRGGGR

Query:  -GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
         G G G GGRGR  G+G  EK+SAEDLDADL+KYH   M+ N
Subjt:  -GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN

AT5G59950.5 RNA-binding (RRM/RBD/RNP motifs) family protein5.3e-6460.08Show/hide
Query:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFY-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED
        LD SLDD+I  N+KS       RG G+ SGP P+RR   NR   R+APY  AKAPE+ W HD+F D    + S  + A  IETGTKLY+SNLDYGV NED
Subjt:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFY-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED

Query:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSG--FLRGGRAL-GRNRGGG
        IKELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGKPMK+EIVG N+ T   P S  P  GNS+G  + RGG+   G+ RGGG
Subjt:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSG--FLRGGRAL-GRNRGGG

Query:  R-GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN
        R G G G GGRGR  G+G  EK+SAEDLDADL+KYH   M+ N
Subjt:  R-GRGPGRGGRGRGNGRGGGEKLSAEDLDADLEKYHEEAMQIN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGACCCTCTTGACACCAGCTTAGATGATATCATCAAGAACAACAAGAAATCCGGATCCTCAAACTTCAGGGGCCGCGGCGGTGCTTCTTCTGGACCAGCTCCCTC
TCGCCGCTTTTACAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTAGAGCCAAGGCGCCTGAGACGCCTTGGTCACACGACTTGTTTGTAGATCATGGTGTGGCATATC
CTTCACACCCTGCACGGGCCTCTACTATTGAAACTGGCACGAAGCTGTATGTTTCGAATTTGGATTACGGTGTTTCCAACGAGGATATCAAGGAACTTTTTTCTGAAGTT
GGCGATCTTAAACGGTATTCTATAAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAGTAGTTTTTTCGCGACAAGCAGATGCTCTAGCTGCTATAAAGAGATA
CAACAATGTTCAGCTAGATGGGAAGCCCATGAAGTTGGAGATTGTGGGAGCAAACATCGTGACGCCTGTTCTACCTGCTTCTTCAAATCCCAATTTTGGGAATTCAAGTG
GATTTCTTAGAGGTGGACGTGCACTGGGCCGAAACCGGGGTGGTGGACGAGGTCGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGCAATGGCAGAGGTGGTGGTGAAAAA
TTATCGGCCGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCAATGCAGATCAATTAA
mRNA sequenceShow/hide mRNA sequence
GAATTTTGGCAATTGGCTTCTCTCTCGCGCTTTTCATCACATCACAGCGTTCGATTGAGAAACCCTAGAATTCTCTTTCCTCTCTGTTTCCCTGAGCCACGACCACCACT
CCTCCGCCATCACCATGGTCGACCCTCTTGACACCAGCTTAGATGATATCATCAAGAACAACAAGAAATCCGGATCCTCAAACTTCAGGGGCCGCGGCGGTGCTTCTTCT
GGACCAGCTCCCTCTCGCCGCTTTTACAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTAGAGCCAAGGCGCCTGAGACGCCTTGGTCACACGACTTGTTTGTAGATCA
TGGTGTGGCATATCCTTCACACCCTGCACGGGCCTCTACTATTGAAACTGGCACGAAGCTGTATGTTTCGAATTTGGATTACGGTGTTTCCAACGAGGATATCAAGGAAC
TTTTTTCTGAAGTTGGCGATCTTAAACGGTATTCTATAAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAGTAGTTTTTTCGCGACAAGCAGATGCTCTAGCT
GCTATAAAGAGATACAACAATGTTCAGCTAGATGGGAAGCCCATGAAGTTGGAGATTGTGGGAGCAAACATCGTGACGCCTGTTCTACCTGCTTCTTCAAATCCCAATTT
TGGGAATTCAAGTGGATTTCTTAGAGGTGGACGTGCACTGGGCCGAAACCGGGGTGGTGGACGAGGTCGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGCAATGGCAGAG
GTGGTGGTGAAAAATTATCGGCCGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCAATGCAGATCAATTAA
Protein sequenceShow/hide protein sequence
MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNEDIKELFSEV
GDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGRGRGNGRGGGEK
LSAEDLDADLEKYHEEAMQIN