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CmoCh01G005990 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G005990
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
Genome locationCmo_Chr01:3040111..3040515
RNA-Seq ExpressionCmoCh01G005990
SyntenyCmoCh01G005990
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593424.1 hypothetical protein SDJN03_12900, partial [Cucurbita argyrosperma subsp. sororia]6.8e-6395.52Show/hide
Query:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV
        M QTLTFLFYLS  SFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQE KYSTTTQKGEGVGGILGIV
Subjt:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV

Query:  FGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA
        FGITFAVFLAMGVYYVLRTRLAN NRAMS KPGA
Subjt:  FGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA

KAG7019217.1 hypothetical protein SDJN02_18175, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-5382.96Show/hide
Query:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGE---GVGGIL
        M Q LTFLF LSSF+FLSI +AEGRAPHGLVYE+PVAFSPMAYDFFHP T++PNA+DPCGASKCSPLPLAAQ+QS PA+ESKYSTT QKG    G GGIL
Subjt:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGE---GVGGIL

Query:  GIVFGITFAVFLAMGVYYVLRTRLANTNRAMSAKP
        GIVFGITFAVFLAMGVYYVLRTR AN NRAMSA+P
Subjt:  GIVFGITFAVFLAMGVYYVLRTRLANTNRAMSAKP

XP_022949574.1 uncharacterized protein LOC111452884 [Cucurbita moschata]1.6e-67100Show/hide
Query:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV
        MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV
Subjt:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV

Query:  FGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA
        FGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA
Subjt:  FGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA

XP_022998560.1 uncharacterized protein LOC111493157 [Cucurbita maxima]4.7e-6494.78Show/hide
Query:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV
        M +TLTFLFYLSSF+FLS V AEGRAPHGL YENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV
Subjt:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV

Query:  FGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA
        FGITFAVFLAMGVYYVLRTRLAN NRAMSAKPGA
Subjt:  FGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA

XP_023524574.1 uncharacterized protein LOC111788471 [Cucurbita pepo subsp. pepo]1.9e-6597.01Show/hide
Query:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV
        M QTLTFLFYLSSF+FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQS PAQESKYSTTTQKGEGVGGILGIV
Subjt:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV

Query:  FGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA
        FGITFAVFLAMGVYYVLRTRLAN NRAMSAKPGA
Subjt:  FGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA

TrEMBL top hitse value%identityAlignment
A0A1S3C6E2 uncharacterized protein LOC1034971983.2e-5078.95Show/hide
Query:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGE---GVGGIL
        M + LTFLF LSSF+FLS+ RA+GRAPHGLVYE+PVAFSPMAYDFFHP T++PN +DPCG SKCSPLPLAAQ+QS PA+ESKYSTT Q  +   G GGIL
Subjt:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGE---GVGGIL

Query:  GIVFGITFAVFLAMGVYYVLRTRLANTNRAMSA
        GIVFGITFAVFLAMGVYYVLRTR AN NRAMSA
Subjt:  GIVFGITFAVFLAMGVYYVLRTRLANTNRAMSA

A0A5A7SXJ1 Uncharacterized protein3.2e-5078.95Show/hide
Query:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGE---GVGGIL
        M + LTFLF LSSF+FLS+ RA+GRAPHGLVYE+PVAFSPMAYDFFHP T++PN +DPCG SKCSPLPLAAQ+QS PA+ESKYSTT Q  +   G GGIL
Subjt:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGE---GVGGIL

Query:  GIVFGITFAVFLAMGVYYVLRTRLANTNRAMSA
        GIVFGITFAVFLAMGVYYVLRTR AN NRAMSA
Subjt:  GIVFGITFAVFLAMGVYYVLRTRLANTNRAMSA

A0A6J1DWP3 uncharacterized protein LOC1110250992.5e-5076.64Show/hide
Query:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGE---GVGGIL
        M Q LTFLF LSS +FLS+ RAEGRAPHGLVYE+P+AFSPMAYDFFHP  ++ NA+DPC ASKCSPLPLAAQ+QS PAQ+SKYST  QKGE   G GG+L
Subjt:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGE---GVGGIL

Query:  GIVFGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA
        GIV GI FAVFLAMGVYYVLRTR AN NRAMS +PGA
Subjt:  GIVFGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA

A0A6J1GD80 uncharacterized protein LOC1114528847.6e-68100Show/hide
Query:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV
        MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV
Subjt:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV

Query:  FGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA
        FGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA
Subjt:  FGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA

A0A6J1KCV5 uncharacterized protein LOC1114931572.3e-6494.78Show/hide
Query:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV
        M +TLTFLFYLSSF+FLS V AEGRAPHGL YENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV
Subjt:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIV

Query:  FGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA
        FGITFAVFLAMGVYYVLRTRLAN NRAMSAKPGA
Subjt:  FGITFAVFLAMGVYYVLRTRLANTNRAMSAKPGA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G28410.1 unknown protein7.6e-2046.09Show/hide
Query:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAE-DPCGASKCSPLPLAAQLQ--SNPAQES---KYSTTTQKGEGVG
        M      +F+ SS    +   A+ RAPHGL YE PVAFSP A+DFFH +  +P+   +PC  S CSPLP+AA++Q  S  AQES     ST T+ G    
Subjt:  MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAE-DPCGASKCSPLPLAAQLQ--SNPAQES---KYSTTTQKGEGVG

Query:  GILGIVFGITFAVFL
        G++GI+FG+ FAV +
Subjt:  GILGIVFGITFAVFL

AT5G60650.1 unknown protein3.3e-1535.77Show/hide
Query:  TLTFLFYLSSFSFLSIVRAEGRAP-HGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGAS----KCSPLPLAAQLQSNPAQESKYST-------TTQKGE
        T + LF+ S  S L  V   G  P HG  Y NP AFSP AYDFFHP++   +  +P  +S      SP P    +    +Q SK S+       + ++ E
Subjt:  TLTFLFYLSSFSFLSIVRAEGRAP-HGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGAS----KCSPLPLAAQLQSNPAQESKYST-------TTQKGE

Query:  GVGGILGIVFGITFAVFLAMGVYYVLRTRLANTNRAM
        G G  +G+V G++F  FL++G+Y+V++ + AN  R +
Subjt:  GVGGILGIVFGITFAVFLAMGVYYVLRTRLANTNRAM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCAAACGCTTACTTTCCTGTTCTATCTCTCTTCATTCTCATTTCTTTCCATCGTCCGAGCTGAAGGCAGAGCACCTCATGGCCTGGTATATGAGAACCCGGTGGC
GTTCTCTCCAATGGCGTATGATTTCTTCCATCCAAGAACCCGGAGTCCCAATGCCGAAGACCCATGTGGTGCATCCAAATGCTCCCCTTTGCCCCTTGCAGCTCAACTGC
AATCTAATCCTGCACAAGAAAGCAAATACTCCACAACAACTCAGAAAGGTGAGGGGGTTGGTGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGGCG
ATGGGGGTGTACTATGTACTACGTACCCGCCTAGCCAACACAAACCGAGCCATGTCTGCAAAACCTGGTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCAAACGCTTACTTTCCTGTTCTATCTCTCTTCATTCTCATTTCTTTCCATCGTCCGAGCTGAAGGCAGAGCACCTCATGGCCTGGTATATGAGAACCCGGTGGC
GTTCTCTCCAATGGCGTATGATTTCTTCCATCCAAGAACCCGGAGTCCCAATGCCGAAGACCCATGTGGTGCATCCAAATGCTCCCCTTTGCCCCTTGCAGCTCAACTGC
AATCTAATCCTGCACAAGAAAGCAAATACTCCACAACAACTCAGAAAGGTGAGGGGGTTGGTGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGGCG
ATGGGGGTGTACTATGTACTACGTACCCGCCTAGCCAACACAAACCGAGCCATGTCTGCAAAACCTGGTGCTTGA
Protein sequenceShow/hide protein sequence
MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIVFGITFAVFLA
MGVYYVLRTRLANTNRAMSAKPGA