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CmoCh01G006030 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G006030
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionzinc finger protein CONSTANS-LIKE 4-like
Genome locationCmo_Chr01:3067137..3067981
RNA-Seq ExpressionCmoCh01G006030
SyntenyCmoCh01G006030
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR010402 - CCT domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607222.1 Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. sororia]1.0e-10297.52Show/hide
Query:  MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGC--SSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS
        MHSH+AATADASLSHLQPPPPFPSFSN IYSHNP PMVEALEVSYSGSSSGGC  SSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS
Subjt:  MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGC--SSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS

Query:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF
        LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF
Subjt:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF

Query:  VP
        VP
Subjt:  VP

KAG7036907.1 Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. argyrosperma]3.8e-10297.03Show/hide
Query:  MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGC--SSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS
        MHSH+AATADASLSHLQPPPPFPSFSN I+SHNP PMVEALEVSYSGSSSGGC  SSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS
Subjt:  MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGC--SSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS

Query:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF
        LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF
Subjt:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF

Query:  VP
        VP
Subjt:  VP

XP_022949263.1 zinc finger protein CONSTANS-LIKE 4-like [Cucurbita moschata]5.7e-106100Show/hide
Query:  MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLI
        MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLI
Subjt:  MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLI

Query:  IEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP
        IEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP
Subjt:  IEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP

XP_022998187.1 zinc finger protein CONSTANS-LIKE 4-like [Cucurbita maxima]2.9e-10296.5Show/hide
Query:  MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLI
        MHSH+AATADASLSHLQPPPPFPSFSN IYSHNP P+VEALEVSYSGSSSGGCSSYGSPTSHPGLSHGP+SRRPLTRAYSSGHNER GEERAWSSESSLI
Subjt:  MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLI

Query:  IEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP
        IEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSP+ETWSCYDNAMAEDDASWTTFLDSYSLNFVP
Subjt:  IEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP

XP_023524572.1 uncharacterized protein LOC111788469 [Cucurbita pepo subsp. pepo]6.0e-7995.18Show/hide
Query:  MVEALEVSYSGSSSGGC--SSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKK
        MVEALEVSYSGSSSGGC  SSYGSPTSHPGLSH PTSRRPLTRAYSSGHNER GEER WSSESS+IIEGMRRASPYTPQEKRHRIERYK KRNQRNFNKK
Subjt:  MVEALEVSYSGSSSGGC--SSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKK

Query:  IKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP
        IKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM EDDASWTTFLDSYSLNFVP
Subjt:  IKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP

TrEMBL top hitse value%identityAlignment
A0A0A0LUR6 CCT domain-containing protein1.4e-4655.06Show/hide
Query:  MHSHAAATADASLSHLQ------PPPPFPSFSNFIYSHNPS-----------PMVEALE------VSYSGSSSGGCSSYGSPT-SHPGL-----------
        MHS + A  D S+ HL        PP FPSF NF  SH+ S           P++E+ E      +SYSG SSG CSSYGSPT S P L           
Subjt:  MHSHAAATADASLSHLQ------PPPPFPSFSNFIYSHNPS-----------PMVEALE------VSYSGSSSGGCSSYGSPT-SHPGL-----------

Query:  ----SHGP---------TSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRG
             HGP         T    + R YSSG + +G  ER  SSESSLIIEGM +A  Y+P+EKR RIERYKTKRNQRNFNKKIKYECRKTLADSR+RIRG
Subjt:  ----SHGP---------TSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRG

Query:  RFARNEEAENSNSTSSPVETWSCYDNAMAE-----DDASWTTFLDSY
        RFARNEE EN NSTSSP+E WSCY+N M E     DD SW TFLDSY
Subjt:  RFARNEEAENSNSTSSPVETWSCYDNAMAE-----DDASWTTFLDSY

A0A6J1GBJ0 zinc finger protein CONSTANS-LIKE 4-like2.8e-106100Show/hide
Query:  MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLI
        MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLI
Subjt:  MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLI

Query:  IEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP
        IEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP
Subjt:  IEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP

A0A6J1HLZ0 zinc finger protein CONSTANS-LIKE 5-like5.9e-4858.19Show/hide
Query:  MHSHAAATADASLSHL------QPPPPFPSFSNFIYSHNPS----------PMVEA-----LEVSYSGSSSGGCSSYGSPTSHP--GLSHGPTSR-----
        MH+ ++AT +ASL HL        PP   SF +FI SH+ S          PM+E+      E+SYS  SSG CSSYGSPTS P   + H P  +     
Subjt:  MHSHAAATADASLSHL------QPPPPFPSFSNFIYSHNPS----------PMVEA-----LEVSYSGSSSGGCSSYGSPTSHP--GLSHGPTSR-----

Query:  ---RPLTRAYSSGHNERGGEERAWSSESSLIIEGM-RRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSS
             + RAYS  ++ +G  E A SSESSLIIEGM  +A  Y+P+EKR RIE+YKTKRNQRNFNKKIKYECRKTLADSR+RIRGRFARNEE ENSNSTSS
Subjt:  ---RPLTRAYSSGHNERGGEERAWSSESSLIIEGM-RRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSS

Query:  PVETWSCYDNAMAE----DDASWTTFLDSYSL
        P ETWSCYDNA AE    DD SW TFLDSYS+
Subjt:  PVETWSCYDNAMAE----DDASWTTFLDSYSL

A0A6J1I3X3 zinc finger protein CONSTANS-LIKE 5-like isoform X12.4e-4958.19Show/hide
Query:  MHSHAAATADASLSHLQ------PPPPFPSFSNFIYSHNP------SPMVE-----ALEVSYSGSSSGGCSSYGSPTSHP--GLSHGP--------TSRR
        MH+ ++AT +ASL HL        PP   SF +FI SH+       +PM+E       E+SYS  SSG CSSY SPTS P   +SHGP            
Subjt:  MHSHAAATADASLSHLQ------PPPPFPSFSNFIYSHNP------SPMVE-----ALEVSYSGSSSGGCSSYGSPTSHP--GLSHGP--------TSRR

Query:  PLTRAYSSGHNERGGEERAWSSESSLIIEGM-RRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVET
         + RAY S ++ +G  E   S+ESSLIIEGM  +A  Y+P+EKR RIE+YKTKRNQRNFNKKIKYECRKTLADSR+RIRGRFARNEE ENSNSTSSP ET
Subjt:  PLTRAYSSGHNERGGEERAWSSESSLIIEGM-RRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVET

Query:  WSCYDNAMAE----DDASWTTFLDSYSLNFVP
        WSCYDNA  E    DD SW TFLDSYS+NF+P
Subjt:  WSCYDNAMAE----DDASWTTFLDSYSLNFVP

A0A6J1K781 zinc finger protein CONSTANS-LIKE 4-like1.4e-10296.5Show/hide
Query:  MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLI
        MHSH+AATADASLSHLQPPPPFPSFSN IYSHNP P+VEALEVSYSGSSSGGCSSYGSPTSHPGLSHGP+SRRPLTRAYSSGHNER GEERAWSSESSLI
Subjt:  MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLI

Query:  IEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP
        IEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSP+ETWSCYDNAMAEDDASWTTFLDSYSLNFVP
Subjt:  IEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G33350.1 CCT motif family protein3.0e-1246.91Show/hide
Query:  MRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDD
        + +    +P++++ +I RY  KRN+RNFNKKIKY CRKTLADSR R+RGRFA+N+E    N      + +S + +   EDD
Subjt:  MRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDD

AT2G33350.2 CCT motif family protein3.0e-1246.91Show/hide
Query:  MRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDD
        + +    +P++++ +I RY  KRN+RNFNKKIKY CRKTLADSR R+RGRFA+N+E    N      + +S + +   EDD
Subjt:  MRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDD

AT3G12890.1 activator of spomin::LUC23.9e-1252.78Show/hide
Query:  GEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEE
        GE+   +SE  +  E   +   Y+ +E++ RI RY  K+NQRNFNK IKY CRKTLAD R R+RGRFARN +
Subjt:  GEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEE

AT5G41380.1 CCT motif family protein2.7e-1335.85Show/hide
Query:  PMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLII--EGMRRASPYTPQEKRHRIERYKTKRNQRNFNK
        PM+++  +SY+  SS   + + S                + R YS+G  +   E +  S  S++    E   +   Y+ +E++ +I +Y+ KRNQRNF K
Subjt:  PMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLII--EGMRRASPYTPQEKRHRIERYKTKRNQRNFNK

Query:  KIKYECRKTLADSRKRIRGRFARNEE-AENSNSTSSPVETWSCYDNAMAEDDASWTTFL
         IKY CRKTLADSR RIRGRFARN+E  E  N      E W   D    +++AS ++F+
Subjt:  KIKYECRKTLADSRKRIRGRFARNEE-AENSNSTSSPVETWSCYDNAMAEDDASWTTFL

AT5G59990.1 CCT motif family protein1.2e-2139.34Show/hide
Query:  HLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSG-SSSGGCSSYGSP----------------TSHPGLSHGPTSRR--------PLTRAYSSG---HNER
        H  PPPP         S   +  V       SG +  GG SS  SP                +SH G S   T+          P+ RA S+G    + R
Subjt:  HLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSG-SSSGGCSSYGSP----------------TSHPGLSHGPTSRR--------PLTRAYSSG---HNER

Query:  GGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDAS
              W SES+ IIEGM +A  Y+P+EK+ +IE+Y++KRN RNFNK+IKYECRKTLADSR RIRGRFARN+E                   A+  D  +
Subjt:  GGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDAS

Query:  WTTFLDSYSLN
        W +FLDS+S N
Subjt:  WTTFLDSYSLN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAGTCACGCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTCATATATTCCCACAACCCTTCCCCAAT
GGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTCGCCGAC
CACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCCCCATAT
ACTCCCCAAGAGAAGAGACACAGAATTGAAAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGTATGAATGTAGGAAGACACTGGCAGATAGTAG
AAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCTGTGGAGACATGGAGCTGCTACGACAATGCCATGGCCGAGGACG
ATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCACAGTCACGCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTCATATATTCCCACAACCCTTCCCCAAT
GGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTCGCCGAC
CACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCCCCATAT
ACTCCCCAAGAGAAGAGACACAGAATTGAAAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGTATGAATGTAGGAAGACACTGGCAGATAGTAG
AAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCTGTGGAGACATGGAGCTGCTACGACAATGCCATGGCCGAGGACG
ATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGATTTACATCCTCCCGAGTCTTACTTTCTTTTTTTCTTCTTATTGTACCCTAAAACGTA
TGTAAAAGAAAAATATCTTTTGATTTCTCTTTTAAGAGTCGATGTTCGAACCTCTATCTCGTAATTGTTTGTATTGAAAGAAAAACAAAACAATCCG
Protein sequenceShow/hide protein sequence
MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPY
TPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP