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CmoCh01G006260 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G006260
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionmetallothionein-like protein LSC54
Genome locationCmo_Chr01:3229068..3229482
RNA-Seq ExpressionCmoCh01G006260
SyntenyCmoCh01G006260
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001008 - Metallothionein, mollusc


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AKU19651.1 metallothionein-like protein [Oxytropis ochrocephala]1.3e-0547.76Show/hide
Query:  MASGCKCGDSCSCGDSCNCQSGSITEAFILN---KFVMLYTNELC----RDGCSCGSSCSCDPCNCK
        M+S C CG SC+CG +C C+ G+ TE  I+      V     E+       GCSCGSSC+CDPCNCK
Subjt:  MASGCKCGDSCSCGDSCNCQSGSITEAFILN---KFVMLYTNELC----RDGCSCGSSCSCDPCNCK

NP_001351703.1 metallothionein-like protein 1 [Cicer arietinum]7.7e-0644.59Show/hide
Query:  SGCKCGDSCSCGDSCNC---------QSGSITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK
        SGC CG SC+CGDSC C         ++G  TE  +L        F     +    D GC CGSSC+CDPCNCK
Subjt:  SGCKCGDSCSCGDSCNC---------QSGSITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK

Q39458.1 RecName: Full=Metallothionein-like protein 1; Short=MT-1 [Cicer arietinum]2.2e-0543.24Show/hide
Query:  SGCKCGDSCSCGDSCNC---------QSGSITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK
        SGC CG SC+CGD C C         ++G  TE  +L        F     +    D GC CGSSC+CDPCNCK
Subjt:  SGCKCGDSCSCGDSCNC---------QSGSITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK

XP_004506573.1 metallothionein-like protein 1 [Cicer arietinum]7.7e-0644Show/hide
Query:  SGCKCGDSCSCGDSCNC----------QSGSITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK
        SGC CG SC+CGDSC C          + G  TE  +L       +F     +    D GC CGSSC+CDPCNCK
Subjt:  SGCKCGDSCSCGDSCNC----------QSGSITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK

XP_022997994.1 metallothionein-like protein LSC54 [Cucurbita maxima]1.1e-1780Show/hide
Query:  MASGCKCGDSCSCGDSCNCQSGSITEAFILNKFVMLYTNELCRDGCSCGSSCSCDPCNCK
        M SGCKCGDSCSCGDSCNCQSGSITEAFILNK           DGCSCGSSCSCDPCNCK
Subjt:  MASGCKCGDSCSCGDSCNCQSGSITEAFILNKFVMLYTNELCRDGCSCGSSCSCDPCNCK

TrEMBL top hitse value%identityAlignment
A0A0K1JSH1 Metallothionein-like protein6.3e-0647.76Show/hide
Query:  MASGCKCGDSCSCGDSCNCQSGSITEAFILN---KFVMLYTNELC----RDGCSCGSSCSCDPCNCK
        M+S C CG SC+CG +C C+ G+ TE  I+      V     E+       GCSCGSSC+CDPCNCK
Subjt:  MASGCKCGDSCSCGDSCNCQSGSITEAFILN---KFVMLYTNELC----RDGCSCGSSCSCDPCNCK

A0A1S2YLR2 metallothionein-like protein 13.7e-0644Show/hide
Query:  SGCKCGDSCSCGDSCNC----------QSGSITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK
        SGC CG SC+CGDSC C          + G  TE  +L       +F     +    D GC CGSSC+CDPCNCK
Subjt:  SGCKCGDSCSCGDSCNC----------QSGSITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK

A0A3Q7K738 metallothionein-like protein 13.7e-0644.59Show/hide
Query:  SGCKCGDSCSCGDSCNC---------QSGSITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK
        SGC CG SC+CGDSC C         ++G  TE  +L        F     +    D GC CGSSC+CDPCNCK
Subjt:  SGCKCGDSCSCGDSCNC---------QSGSITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK

A0A6J1KD42 metallothionein-like protein LSC545.5e-1880Show/hide
Query:  MASGCKCGDSCSCGDSCNCQSGSITEAFILNKFVMLYTNELCRDGCSCGSSCSCDPCNCK
        M SGCKCGDSCSCGDSCNCQSGSITEAFILNK           DGCSCGSSCSCDPCNCK
Subjt:  MASGCKCGDSCSCGDSCNCQSGSITEAFILNKFVMLYTNELCRDGCSCGSSCSCDPCNCK

I3T2G0 Metallothionein1.8e-0543.24Show/hide
Query:  SGCKCGDSCSCGDSCNCQS---------GSITEAFILNKFVMLYTNELC-------RDGCSCGSSCSCDPCNCK
        SGCKCG SC+CGD+C C S         G  TE  I+         E           GC CG SC+CDPCNCK
Subjt:  SGCKCGDSCSCGDSCNCQS---------GSITEAFILNKFVMLYTNELC-------RDGCSCGSSCSCDPCNCK

SwissProt top hitse value%identityAlignment
P20238 Metallothionein-like protein 18.0e-0637.5Show/hide
Query:  MASGCKCGDSCSCGDSCNC-----QSGSITEAFILNKFVMLYTNELCR--------DGCSCGSSCSCDPCNC
        M+SGC CG  C CGD+C+C        + T   I     +   +E           +GC CGS+C CDPCNC
Subjt:  MASGCKCGDSCSCGDSCNC-----QSGSITEAFILNKFVMLYTNELCR--------DGCSCGSSCSCDPCNC

P20830 Metallothionein-like protein 13.2e-0743.24Show/hide
Query:  SGCKCGDSCSCGDSCNCQSGS---------ITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK
        SGC CG SC+CGDSC C   S          TE  IL       +F     +    D GC CG +C+CDPCNCK
Subjt:  SGCKCGDSCSCGDSCNCQSGS---------ITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK

P43399 Metallothionein-like protein 13.8e-0845.95Show/hide
Query:  SGCKCGDSCSCGDSCNCQSGS---------ITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK
        SGC CG SC+CGDSC C   S          TE  IL       +F          D GC CGSSC+CDPCNCK
Subjt:  SGCKCGDSCSCGDSCNCQSGS---------ITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK

Q39458 Metallothionein-like protein 12.9e-0843.24Show/hide
Query:  SGCKCGDSCSCGDSCNC---------QSGSITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK
        SGC CG SC+CGD C C         ++G  TE  +L        F     +    D GC CGSSC+CDPCNCK
Subjt:  SGCKCGDSCSCGDSCNC---------QSGSITEAFILN------KFVMLYTNELCRD-GCSCGSSCSCDPCNCK

Q41670 Metallothionein-like protein 1B2.7e-0636.49Show/hide
Query:  SGCKCGDSCSCGDSCNC--QSGSITEAFILNKFVML--------------YTNELCRDGCSCGSSCSCDPCNCK
        SGC CG SC+CGDSC C  +S  ++ + +  K  ++               +      GC CG +C+CDPCNCK
Subjt:  SGCKCGDSCSCGDSCNC--QSGSITEAFILNKFVML--------------YTNELCRDGCSCGSSCSCDPCNCK

Arabidopsis top hitse value%identityAlignment
AT1G07600.1 metallothionein 1A4.1e-0544.83Show/hide
Query:  SGCKCGDSCSCGDSCNCQSGSITEAFILNKFVMLYTNELCRDGCSCGSSCSC-DPCNC
        S C CG SC CGDSC+C+                  N+ C D CSCGS+CSC   CNC
Subjt:  SGCKCGDSCSCGDSCNCQSGSITEAFILNKFVMLYTNELCRDGCSCGSSCSC-DPCNC

AT1G07610.1 metallothionein 1C3.1e-0544.83Show/hide
Query:  SGCKCGDSCSCGDSCNCQSGSITEAFILNKFVMLYTNELCRDGCSCGSSCSC-DPCNC
        S C CG SC CGDSC+C+                  N+ C D CSCGS+CSC   CNC
Subjt:  SGCKCGDSCSCGDSCNCQSGSITEAFILNKFVMLYTNELCRDGCSCGSSCSC-DPCNC

AT3G09390.1 metallothionein 2A2.4e-0532.05Show/hide
Query:  CGDSCSCGDSCNCQSG----------------SITEAFILNKFVML--------YTNELCRDGCSCGSSCSCDPCNCK
        CG +C CG  C C +G                + TE F+L     +         +N    D C CGS C CDPC CK
Subjt:  CGDSCSCGDSCNCQSG----------------SITEAFILNKFVML--------YTNELCRDGCSCGSSCSCDPCNCK

AT5G02380.1 metallothionein 2B2.6e-0431.08Show/hide
Query:  CGDSCSCGDSCNCQSG------------SITEAFILNKFVMLYTNELC--------RDGCSCGSSCSCDPCNCK
        CG SC CG +C C +G            + TE  +L     + +             D C CGS C C+PC CK
Subjt:  CGDSCSCGDSCNCQSG------------SITEAFILNKFVMLYTNELC--------RDGCSCGSSCSCDPCNCK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTGGGTGCAAATGTGGTGACAGTTGCTCCTGTGGAGATAGCTGCAACTGCCAATCTGGGTCTATCACAGAGGCCTTCATCCTCAACAAGTTTGTAATGTTGTA
TACAAATGAACTATGCAGGGATGGGTGCAGCTGTGGGAGTAGCTGTTCATGTGACCCATGCAACTGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTGGGTGCAAATGTGGTGACAGTTGCTCCTGTGGAGATAGCTGCAACTGCCAATCTGGGTCTATCACAGAGGCCTTCATCCTCAACAAGTTTGTAATGTTGTA
TACAAATGAACTATGCAGGGATGGGTGCAGCTGTGGGAGTAGCTGTTCATGTGACCCATGCAACTGCAAGTGA
Protein sequenceShow/hide protein sequence
MASGCKCGDSCSCGDSCNCQSGSITEAFILNKFVMLYTNELCRDGCSCGSSCSCDPCNCK