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CmoCh01G006270 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G006270
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationCmo_Chr01:3230177..3230608
RNA-Seq ExpressionCmoCh01G006270
SyntenyCmoCh01G006270
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607243.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. sororia]4.4e-7697.2Show/hide
Query:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFE
        MPLPPSFAASPPPI+AIVETYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVR+EASVFSYKEADGGHDDECAICLDEFE
Subjt:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFE

Query:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP
        DAQKCRKMNNCGHIFH RCIDRWLKVDR CPLCRSCVCVVVHP
Subjt:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP

KAG7036928.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-7597.16Show/hide
Query:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFE
        MPLPPSFAASPPPI+AIVETYGLRWTNNNLALIAICFL+ILYLILLNFFKSELESGSEPAGALPVVREPEIVR+EASVFSYKEADGGHDDECAICLDEFE
Subjt:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFE

Query:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVV
        DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVV+
Subjt:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVV

XP_022998666.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]5.8e-7696.5Show/hide
Query:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFE
        MPLPPSFAASPPPISAIV+TYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVR+EASVFSY+EADGGHDDECAICLDEFE
Subjt:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFE

Query:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP
        D QKCRKMN CGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP
Subjt:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP

XP_023524566.1 RING-H2 finger protein ATL66-like [Cucurbita pepo subsp. pepo]1.0e-4869.39Show/hide
Query:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFFKS----ELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICL
        MP PPS  ASPPPIS +V T GL W +  LALIA+C +IILYLI+LN  KS    E +SG E  GALP    P IVR+EASVF Y+EADGGH  ECAICL
Subjt:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFFKS----ELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICL

Query:  DEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP
        D FED QKCR MN CGHIFH RCIDRWLKV+ HCPLCRSCVC VVHP
Subjt:  DEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP

XP_023524567.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]7.5e-7696.5Show/hide
Query:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFE
        MP PPSFAASPPPISAIVETYGLRWTNNNLA+IAICFLIILYLILLNFFKSELESGS+PAGALPVVREPEIVR+EASVFSYKEADGGHDDECAICLDEFE
Subjt:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFE

Query:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP
        DAQKCRKMN CGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP
Subjt:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP

TrEMBL top hitse value%identityAlignment
A0A0A0LXE1 RING-type domain-containing protein2.8e-2850Show/hide
Query:  MPLPPSFAASPPP---ISAIVETYGLRWTNNNLALIAICFLIILYLILLNFF------KSELESGSEPAGALPVVREPEIVRVEASVFS-YKEADGGHDD
        M  PP  AASP P     AI + + L        L AICF II+Y +   F+      +SE ++G+     LPV RE EIV++E  VFS Y+EA G  +D
Subjt:  MPLPPSFAASPPP---ISAIVETYGLRWTNNNLALIAICFLIILYLILLNFF------KSELESGSEPAGALPVVREPEIVRVEASVFS-YKEADGGHDD

Query:  ---ECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP
           EC ICL++FED QKC+ M  CGHIFH  CIDRWL+ +R CPLCRSCVCVVV+P
Subjt:  ---ECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP

A0A1S3C6H7 RING-H2 finger protein ATL66-like5.3e-2746.63Show/hide
Query:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFF----KSELESGSEPAGA---LPVVRE------PEIVRVEASVFSYKEA---
        M  P   AASP P++ I   +     ++   + AICF II+Y I    +     ++ +S     G    LP  RE       EIV++EA VFSY+EA   
Subjt:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFF----KSELESGSEPAGA---LPVVRE------PEIVRVEASVFSYKEA---

Query:  ----DGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP
            D   D EC ICL++FEDAQKCR M  CGHIFHR CIDRWLK +R CPLCR+CVCVVV P
Subjt:  ----DGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP

A0A5D3BGV5 RING-H2 finger protein ATL66-like5.3e-2746.63Show/hide
Query:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFF----KSELESGSEPAGA---LPVVRE------PEIVRVEASVFSYKEA---
        M  P   AASP P++ I   +     ++   + AICF II+Y I    +     ++ +S     G    LP  RE       EIV++EA VFSY+EA   
Subjt:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFF----KSELESGSEPAGA---LPVVRE------PEIVRVEASVFSYKEA---

Query:  ----DGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP
            D   D EC ICL++FEDAQKCR M  CGHIFHR CIDRWLK +R CPLCR+CVCVVV P
Subjt:  ----DGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP

A0A6J1DN25 RING-H2 finger protein ATL1-like2.4e-2750.68Show/hide
Query:  PPSFAASPPPI---SAIVETY---GLRWTNNNLALIAICFLIILYLILLNFFKSEL---ESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAI
        PPS+ AS P +   SAI   Y   GL   +   A+ AIC + ILY I  + +KS L   E      GA P VRE E+VR+EAS F+    D G  +EC I
Subjt:  PPSFAASPPPI---SAIVETY---GLRWTNNNLALIAICFLIILYLILLNFFKSEL---ESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAI

Query:  CLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVH
        CL EF+  +KC  M+ C H+FHR CIDRWLK +RHCPLCRSCVCV VH
Subjt:  CLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVH

A0A6J1KAT3 RING-type E3 ubiquitin transferase2.8e-7696.5Show/hide
Query:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFE
        MPLPPSFAASPPPISAIV+TYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVR+EASVFSY+EADGGHDDECAICLDEFE
Subjt:  MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFE

Query:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP
        D QKCRKMN CGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP
Subjt:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP

SwissProt top hitse value%identityAlignment
Q9LSW9 RING-H2 finger protein ATL167.5e-1046.43Show/hide
Query:  KEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCV
        +E +     EC++CL EF+D +K R + NC H+FH  CID WL+ + +CPLCR+ V
Subjt:  KEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCV

Q9LX93 E3 ubiquitin-protein ligase RING12.0e-1041.18Show/hide
Query:  SVFSYKEADGGHD-DECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP
        +V  +K+ +G  D  EC++CL+EFE+ +  R +  C H FH  CID WL   ++CPLCR+ V ++  P
Subjt:  SVFSYKEADGGHD-DECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP

Q9M0C3 RING-H2 finger protein ATL142.0e-1045Show/hide
Query:  FSYKEADGGH-DDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCV
        F Y E    +  D+C +C+D F   Q CRK+  CGH+FHR+C+D WL     CP+CR  V
Subjt:  FSYKEADGGH-DDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCV

Q9XF92 Brassinosteroid-responsive RING protein 17.5e-1037.84Show/hide
Query:  ICFLIILYLILLNFFKSEL---ESGSEPAGALPVVREP---EIVRVEASVFSYKE-ADGGHD--DECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLK
        I F I  +L L +F + +    +  S P   +P  R P    ++R    V  ++E  + G D  + CA+CL EFE  Q+ R + NC HIFHR C+DRW+ 
Subjt:  ICFLIILYLILLNFFKSEL---ESGSEPAGALPVVREP---EIVRVEASVFSYKE-ADGGHD--DECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLK

Query:  VD-RHCPLCRS
         D + CPLCR+
Subjt:  VD-RHCPLCRS

Q9ZV51 RING-H2 finger protein ATL561.1e-1032.17Show/hide
Query:  LALIAICFLIILYLILLNFF-------KSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDR
        L LI I  ++IL L+L +         ++  +  S+   +  V + P+    E S ++  E+D      C +C D F   Q CR +  CGH+FHR+C+D 
Subjt:  LALIAICFLIILYLILLNFF-------KSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDR

Query:  WLKVDRHCPLCRSCV
        WL     CP+CR+ V
Subjt:  WLKVDRHCPLCRSCV

Arabidopsis top hitse value%identityAlignment
AT1G51930.1 RING/U-box superfamily protein9.6e-1336.36Show/hide
Query:  KSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCV
        + ++E+G   A     ++E E           +E +GG    C ICL+E+ED  + R++ NCGH+FH  CID WL   ++CP CR  V
Subjt:  KSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCV

AT2G18670.1 RING/U-box superfamily protein8.2e-1232.17Show/hide
Query:  LALIAICFLIILYLILLNFF-------KSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDR
        L LI I  ++IL L+L +         ++  +  S+   +  V + P+    E S ++  E+D      C +C D F   Q CR +  CGH+FHR+C+D 
Subjt:  LALIAICFLIILYLILLNFF-------KSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDR

Query:  WLKVDRHCPLCRSCV
        WL     CP+CR+ V
Subjt:  WLKVDRHCPLCRSCV

AT3G43430.1 RING/U-box superfamily protein1.4e-1135.11Show/hide
Query:  SELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVD---------RHCPLCRS
        S  +S S P+ +   ++E   + V A   + + +    +D CA+CL + ED  + R++ NC H+FHR CIDRWL  +         R CPLCR+
Subjt:  SELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVD---------RHCPLCRS

AT4G30370.1 RING/U-box superfamily protein1.4e-1145Show/hide
Query:  FSYKEADGGH-DDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCV
        F Y E    +  D+C +C+D F   Q CRK+  CGH+FHR+C+D WL     CP+CR  V
Subjt:  FSYKEADGGH-DDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCV

AT5G10380.1 RING/U-box superfamily protein1.4e-1141.18Show/hide
Query:  SVFSYKEADGGHD-DECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP
        +V  +K+ +G  D  EC++CL+EFE+ +  R +  C H FH  CID WL   ++CPLCR+ V ++  P
Subjt:  SVFSYKEADGGHD-DECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTTGCCGCCGTCTTTTGCCGCTTCACCGCCGCCAATTAGCGCCATCGTGGAGACTTACGGACTGAGATGGACGAATAACAATTTGGCTCTGATAGCCATTTGTTT
CCTCATTATACTCTACCTCATCCTCTTAAATTTCTTCAAATCCGAATTAGAATCCGGCAGTGAGCCAGCCGGAGCATTGCCGGTAGTGCGAGAGCCGGAGATTGTACGGG
TTGAGGCCTCGGTTTTCAGTTACAAGGAAGCCGATGGAGGTCACGACGATGAATGTGCGATTTGCCTTGACGAATTTGAAGATGCCCAAAAGTGCCGGAAGATGAATAAC
TGTGGCCATATATTCCACCGCCGCTGCATTGACCGGTGGCTCAAGGTGGACCGCCACTGCCCCCTTTGCCGCAGCTGCGTTTGCGTAGTCGTTCATCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGTTGCCGCCGTCTTTTGCCGCTTCACCGCCGCCAATTAGCGCCATCGTGGAGACTTACGGACTGAGATGGACGAATAACAATTTGGCTCTGATAGCCATTTGTTT
CCTCATTATACTCTACCTCATCCTCTTAAATTTCTTCAAATCCGAATTAGAATCCGGCAGTGAGCCAGCCGGAGCATTGCCGGTAGTGCGAGAGCCGGAGATTGTACGGG
TTGAGGCCTCGGTTTTCAGTTACAAGGAAGCCGATGGAGGTCACGACGATGAATGTGCGATTTGCCTTGACGAATTTGAAGATGCCCAAAAGTGCCGGAAGATGAATAAC
TGTGGCCATATATTCCACCGCCGCTGCATTGACCGGTGGCTCAAGGTGGACCGCCACTGCCCCCTTTGCCGCAGCTGCGTTTGCGTAGTCGTTCATCCATGA
Protein sequenceShow/hide protein sequence
MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNN
CGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP