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CmoCh01G006280 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G006280
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationCmo_Chr01:3232010..3232462
RNA-Seq ExpressionCmoCh01G006280
SyntenyCmoCh01G006280
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607244.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. sororia]9.6e-7499.25Show/hide
Query:  MVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCG
        MVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCG
Subjt:  MVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCG

Query:  HIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSF
        HIFHCRCIDRWLKVE HCPLCRSCVCAVVHPSSF
Subjt:  HIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSF

KAG7036928.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma]3.3e-7499.25Show/hide
Query:  MVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCG
        MVNTS LTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCG
Subjt:  MVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCG

Query:  HIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSF
        HIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSF
Subjt:  HIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSF

XP_022998666.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]9.4e-5374.15Show/hide
Query:  MPSPPSSAASPPPISKMVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICL
        MP PPS AASPPPIS +V T GL W +  LALIA+C +IILYLI+LN  KS    E +SG E  GALP VR P IVRIEASVF YREADGGH  ECAICL
Subjt:  MPSPPSSAASPPPISKMVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICL

Query:  DGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHP
        D FEDGQKCR MNKCGHIFH RCIDRWLKV+ HCPLCRSCVC VVHP
Subjt:  DGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHP

XP_023524566.1 RING-H2 finger protein ATL66-like [Cucurbita pepo subsp. pepo]1.0e-7896Show/hide
Query:  MPSPPSSAASPPPISKMVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICL
        MPSPPSS ASPPPISKMVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALP    PVIVRIEASVFCYREADGGHG ECAICL
Subjt:  MPSPPSSAASPPPISKMVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICL

Query:  DGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSF
        DGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSF
Subjt:  DGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSF

XP_023524567.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]1.0e-5172.11Show/hide
Query:  MPSPPSSAASPPPISKMVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICL
        MPSPPS AASPPPIS +V T GL W +  LA+IA+C +IILYLI+LN  KS    E +SG +  GALP VR P IVRIEASVF Y+EADGGH  ECAICL
Subjt:  MPSPPSSAASPPPISKMVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICL

Query:  DGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHP
        D FED QKCR MNKCGHIFH RCIDRWLKV+ HCPLCRSCVC VVHP
Subjt:  DGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHP

TrEMBL top hitse value%identityAlignment
A0A0A0LXE1 RING-type domain-containing protein6.8e-2549.02Show/hide
Query:  MPSPPSSAASPPPISKMVNTSGL-TWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAV-GALPEVRAPVIVRIEASVFC-YREADGGHG---A
        M  PP  AASP P      T+G     D++  L A+C  II+Y +          NES+     V   LP  R   IV+IE  VF  YREA G       
Subjt:  MPSPPSSAASPPPISKMVNTSGL-TWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAV-GALPEVRAPVIVRIEASVFC-YREADGGHG---A

Query:  ECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHP
        EC ICL+ FEDGQKC+ M KCGHIFHC CIDRWL+ E  CPLCRSCVC VV+P
Subjt:  ECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHP

A0A1S3C6H7 RING-H2 finger protein ATL66-like1.3e-2344.79Show/hide
Query:  MPSPPSSAASPPPISKMVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRA---------PVIVRIEASVFCYREA---
        M SP   AASP P++ +         D+Y  + A+C  II+Y I          N+  S    VG + E+ A           IV+IEA VF YREA   
Subjt:  MPSPPSSAASPPPISKMVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRA---------PVIVRIEASVFCYREA---

Query:  ----DGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHP
            D     EC ICL+ FED QKCR M KCGHIFH  CIDRWLK E  CPLCR+CVC VV P
Subjt:  ----DGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHP

A0A5D3BGV5 RING-H2 finger protein ATL66-like1.3e-2344.79Show/hide
Query:  MPSPPSSAASPPPISKMVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRA---------PVIVRIEASVFCYREA---
        M SP   AASP P++ +         D+Y  + A+C  II+Y I          N+  S    VG + E+ A           IV+IEA VF YREA   
Subjt:  MPSPPSSAASPPPISKMVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRA---------PVIVRIEASVFCYREA---

Query:  ----DGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHP
            D     EC ICL+ FED QKCR M KCGHIFH  CIDRWLK E  CPLCR+CVC VV P
Subjt:  ----DGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHP

A0A6J1DN25 RING-H2 finger protein ATL1-like4.6e-2952Show/hide
Query:  SPPSSAASPPPISKM------VNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAEC
        SPPS  AS P ++            GL+  DEY A+ A+C V ILY I  +C KSR  NES+    AVGA P VR   +VRIEAS F      G  G EC
Subjt:  SPPSSAASPPPISKM------VNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAEC

Query:  AICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVH
         ICL  F+ G+KC +M+KC H+FH  CIDRWLK E HCPLCRSCVC  VH
Subjt:  AICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVH

A0A6J1KAT3 RING-type E3 ubiquitin transferase4.5e-5374.15Show/hide
Query:  MPSPPSSAASPPPISKMVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICL
        MP PPS AASPPPIS +V T GL W +  LALIA+C +IILYLI+LN  KS    E +SG E  GALP VR P IVRIEASVF YREADGGH  ECAICL
Subjt:  MPSPPSSAASPPPISKMVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICL

Query:  DGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHP
        D FEDGQKCR MNKCGHIFH RCIDRWLKV+ HCPLCRSCVC VVHP
Subjt:  DGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHP

SwissProt top hitse value%identityAlignment
Q7XLY8 E3 ubiquitin-protein ligase Os04g05909001.2e-1045.9Show/hide
Query:  YREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAV
        YR  DG  H  +C++CL  F DG+  R++ +C H FH +CID WLK   +CPLCR+ +  V
Subjt:  YREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAV

Q9LF64 RING-H2 finger protein ATL523.7e-1242.86Show/hide
Query:  SVFCYREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSS
        +V+ Y+  DG   G++C++CL  FE+ +  R++ KC H FH  CID WLK   +CPLCR+ V  V +P++
Subjt:  SVFCYREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSS

Q9M0C3 RING-H2 finger protein ATL149.2e-1140.3Show/hide
Query:  IVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV
        + R+    +C   ++ G G +C +C+DGF  GQ CR + +CGH+FH +C+D WL     CP+CR  V
Subjt:  IVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV

Q9SRM0 RING-H2 finger protein ATL668.9e-1449.25Show/hide
Query:  PVIVRIEASVFCYRE-ADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCR
        P  +R    V C RE A+     EC ICL GFE+G+K +++  C H +HC C+DRWLK E  CPLCR
Subjt:  PVIVRIEASVFCYRE-ADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCR

Q9ZV51 RING-H2 finger protein ATL561.2e-1030.87Show/hide
Query:  PPSSAAS-PPPISK-------MVNTSGLTWGDEYLALIAVCTVIILYLIVLNC---IKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGH
        PPS+  S PPP  K       +V     +    +L LI + +V+IL L++ +     + R  N      + + +    + P     E S +   E+D   
Subjt:  PPSSAAS-PPPISK-------MVNTSGLTWGDEYLALIAVCTVIILYLIVLNC---IKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGH

Query:  GAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV
           C +C DGF  GQ CR +  CGH+FH +C+D WL     CP+CR+ V
Subjt:  GAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV

Arabidopsis top hitse value%identityAlignment
AT1G04360.1 RING/U-box superfamily protein1.1e-1130.86Show/hide
Query:  PSPPSSAASPPPISKMVNTSGLTWGDEYLALIAVCTVIIL----YLIVLNC--------IKSRYFNESD-------SGYEAVGALPE--VRA-PVIVRIE
        P PP S     PI    ++SG  +    +A+I +     L    Y+ V+ C        I  R    SD       S +E    L E  +RA PV    +
Subjt:  PSPPSSAASPPPISKMVNTSGLTWGDEYLALIAVCTVIIL----YLIVLNC--------IKSRYFNESD-------SGYEAVGALPE--VRA-PVIVRIE

Query:  ASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV
          V    E    +  EC++CL+ F++ +K R++  C H+FH  CID WL+   +CPLCR+ V
Subjt:  ASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV

AT2G18670.1 RING/U-box superfamily protein8.6e-1230.87Show/hide
Query:  PPSSAAS-PPPISK-------MVNTSGLTWGDEYLALIAVCTVIILYLIVLNC---IKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGH
        PPS+  S PPP  K       +V     +    +L LI + +V+IL L++ +     + R  N      + + +    + P     E S +   E+D   
Subjt:  PPSSAAS-PPPISK-------MVNTSGLTWGDEYLALIAVCTVIILYLIVLNC---IKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGH

Query:  GAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV
           C +C DGF  GQ CR +  CGH+FH +C+D WL     CP+CR+ V
Subjt:  GAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV

AT3G11110.1 RING/U-box superfamily protein6.3e-1549.25Show/hide
Query:  PVIVRIEASVFCYRE-ADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCR
        P  +R    V C RE A+     EC ICL GFE+G+K +++  C H +HC C+DRWLK E  CPLCR
Subjt:  PVIVRIEASVFCYRE-ADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCR

AT4G30370.1 RING/U-box superfamily protein6.6e-1240.3Show/hide
Query:  IVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV
        + R+    +C   ++ G G +C +C+DGF  GQ CR + +CGH+FH +C+D WL     CP+CR  V
Subjt:  IVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV

AT5G17600.1 RING/U-box superfamily protein2.7e-1342.86Show/hide
Query:  SVFCYREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSS
        +V+ Y+  DG   G++C++CL  FE+ +  R++ KC H FH  CID WLK   +CPLCR+ V  V +P++
Subjt:  SVFCYREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATCGCCGCCGTCTTCTGCCGCTTCACCGCCGCCAATTAGCAAGATGGTCAACACTTCCGGACTGACATGGGGGGATGAGTATTTAGCTCTGATAGCCGTTTGTAC
CGTCATTATACTCTACCTCATCGTCTTAAATTGCATCAAATCCAGATACTTCAACGAATCAGATTCCGGCTATGAGGCAGTCGGAGCATTGCCGGAAGTGCGAGCGCCGG
TGATTGTACGGATTGAGGCCTCGGTTTTCTGTTACAGGGAAGCCGACGGAGGTCACGGCGCCGAATGCGCGATTTGCCTGGACGGATTTGAAGATGGGCAAAAGTGTCGA
ATGATGAATAAGTGCGGCCATATATTCCACTGCCGCTGCATTGACCGGTGGCTCAAGGTGGAGTGCCATTGTCCCCTTTGCCGCAGCTGCGTTTGTGCCGTCGTTCATCC
ATCTTCTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCATCGCCGCCGTCTTCTGCCGCTTCACCGCCGCCAATTAGCAAGATGGTCAACACTTCCGGACTGACATGGGGGGATGAGTATTTAGCTCTGATAGCCGTTTGTAC
CGTCATTATACTCTACCTCATCGTCTTAAATTGCATCAAATCCAGATACTTCAACGAATCAGATTCCGGCTATGAGGCAGTCGGAGCATTGCCGGAAGTGCGAGCGCCGG
TGATTGTACGGATTGAGGCCTCGGTTTTCTGTTACAGGGAAGCCGACGGAGGTCACGGCGCCGAATGCGCGATTTGCCTGGACGGATTTGAAGATGGGCAAAAGTGTCGA
ATGATGAATAAGTGCGGCCATATATTCCACTGCCGCTGCATTGACCGGTGGCTCAAGGTGGAGTGCCATTGTCCCCTTTGCCGCAGCTGCGTTTGTGCCGTCGTTCATCC
ATCTTCTTTTTGA
Protein sequenceShow/hide protein sequence
MPSPPSSAASPPPISKMVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICLDGFEDGQKCR
MMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSF