CuGenDBv2

Gene ID	CmoCh01G006580
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Elongin-C
Genome location	Cmo_Chr01:3360033..3362289
RNA-Seq Expression	CmoCh01G006580
Synteny	CmoCh01G006580
Gene Ontology terms	GO:0006414 - translational elongation (biological process) GO:0006511 - ubiquitin-dependent protein catabolic process (biological process) GO:0070449 - elongin complex (cellular component) GO:0003746 - translation elongation factor activity (molecular function)
InterPro domains	IPR001232 - S-phase kinase-associated protein 1-like IPR011333 - SKP1/BTB/POZ domain superfamily IPR016073 - SKP1 component, POZ domain IPR039948 - Elongin-C

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008457436.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo]

2.5e-46

96.94

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Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEKICQYF+W+LQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022158132.1 elongin-C [Momordica charantia]

7.3e-46

95.92

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Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEKICQYF+W+LQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022948640.1 elongin-C-like [Cucurbita moschata]

1.2e-48

100

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Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022964706.1 elongin-C-like [Cucurbita moschata]

4.3e-46

95.92

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Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEKICQYFYW+LQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT

XP_038895699.1 elongin-C [Benincasa hispida]

1.9e-46

96.94

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Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEKICQYFYW+LQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LY44 Elongin-C

1.2e-46

96.94

Show/hide

Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEKICQYF+W+LQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT

A0A1S3C6T3 Elongin-C

1.2e-46

96.94

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Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEKICQYF+W+LQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1GAF9 Elongin-C

5.8e-49

100

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Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1HJP6 Elongin-C

2.1e-46

95.92

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Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEKICQYFYW+LQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1KFM7 Elongin-C

5.8e-49

100

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Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT

SwissProt top hits

e value

%identity

Alignment

P83940 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQF--ASGKETEFPIEPELTLELMMAANYL

P83941 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQF--ASGKETEFPIEPELTLELMMAANYL

Q15369 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQF--ASGKETEFPIEPELTLELMMAANYL

Q2KII4 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQF--ASGKETEFPIEPELTLELMMAANYL

Q54Q05 Elongin-C

6.9e-15

41.24

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Query:  DTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSP-GNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKE--TEFPIEPELTLELMMAANYLHT
        D ++L S+ G EFV+ +  + VS TI++ML+    NF E Q+ E+ F EISTP+LEK+ QYFY+  ++ +      EFPI  ++ ++L++AA++L T
Subjt:  DTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSP-GNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKE--TEFPIEPELTLELMMAANYLHT

Arabidopsis top hits

e value

%identity

Alignment

AT5G59140.1 BTB/POZ domain-containing protein

3.5e-38

79.79

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Query:  DTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT
        +TVKLIS EGFEFVI ++AAMVSQTIR+MLTSPG F+ES+   VTFP+IST ILEKICQYFYW LQ++ GKETEF IEPELTLELMMAANYLHT
Subjt:  DTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT

Sequences

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CDS sequence

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ATGAAGAAGGAAGATACTGTAAAATTGATCAGCGCCGAGGGTTTCGAGTTCGTGATTCACAAGGACGCTGCCATGGTTTCTCAGACGATTCGGAATATGCTTACTTCGCC
AGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTTCCTGAGATTAGCACTCCCATTCTCGAGAAGATTTGCCAATACTTTTACTGGCATCTTCAATTCGCCAGTG
GGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTGGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

mRNA sequence

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AAAAAGGGAGTAGAATCGAAAGCCTGTTTCTTCGTTTCCATAGTTCATTCAAGCGAGAGGGAGAGAGAGGAGGAATTTCGATAGTTCAGAGCGAAATGAAGAAGGAAGAT
ACTGTAAAATTGATCAGCGCCGAGGGTTTCGAGTTCGTGATTCACAAGGACGCTGCCATGGTTTCTCAGACGATTCGGAATATGCTTACTTCGCCAGGAAATTTTGCTGA
ATCGCAGCACAGAGAAGTGACTTTTCCTGAGATTAGCACTCCCATTCTCGAGAAGATTTGCCAATACTTTTACTGGCATCTTCAATTCGCCAGTGGGAAAGAGACCGAGT
TCCCTATTGAACCTGAATTGACTCTGGAGTTGATGATGGCTGCCAACTATCTCCATACATGAATTATAAGCTCTGGGCACTCTTCCACAGTGACCCATTTGACATTATAA
TCAGGCACAAATATTGCGGTGTAGTTTTTGTGCTTGGAAGCTCCATTTTATTTCTAAATCATAACGACTTTCTCCTCTCCTCTTCGTAGCAAAGTTTTCTTGGAATGGAA
TGGCTTCTTTATCTTCTCTGTGCAAAAGGAGTATATTATTCCCTGAAGACACAAAGTGGGGAAGATAGTGTGTTCCTTATGGATTTGTATTTGTTAGAAGTGAATATTAA
ATGTGAATCAATAAGCTGAGTATTGCTTTTTAGGTGTGACTTTAATGTTGCACTGTTTGAGAATAATAGCTTGGTTAAATTATACCATATACACCTAAACTTTGGGCCCT
CATTTCAATTTCGATACATTGGAGAACATTTTCATTAAAAGAAGATGGAAATTGAGGCTAATAGGTAAAAATTG

Protein sequence

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MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEKICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT

CmoCh01G006580 (gene) of Cucurbita moschata (Rifu) v1 genome