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CmoCh01G007520 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G007520
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionStructure-specific endonuclease subunit SLX1 homolog
Genome locationCmo_Chr01:3885832..3886710
RNA-Seq ExpressionCmoCh01G007520
SyntenyCmoCh01G007520
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0051569 - regulation of histone H3-K4 methylation (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016593 - Cdc73/Paf1 complex (cellular component)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060004.1 Structure-specific endonuclease subunit SLX1 [Cucumis melo var. makuwa]1.3e-2390.77Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT
        MVLCIYGFPT VSALQFEWAWQHPNESLAV S AATFKSLSGVANKVKLAYTMLTLPAWC   IT
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT

KAG7037034.1 hypothetical protein SDJN02_00655, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-3047.96Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANK-VKLAYTMLTLP------------------------------AWCSRWITKQVQ
        MVLCIYGFPTLVSALQFEWAWQHPNESLAV SVAATFKSLSGVANK +K A +  +LP                                C   +   ++
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANK-VKLAYTMLTLP------------------------------AWCSRWITKQVQ

Query:  MEYQMNCMDAK------KNSRATNECRLVHVLLIMMQICLMTYMDVVKNSSL------------------LRMSGAKM-IEDGAEDELEGNGMKLQQQQP
        +E     MD +       N     E  L     +  + C   Y D   +  L                    MSGA+M IEDG EDELEGNGMKLQQQQP
Subjt:  MEYQMNCMDAK------KNSRATNECRLVHVLLIMMQICLMTYMDVVKNSSL------------------LRMSGAKM-IEDGAEDELEGNGMKLQQQQP

Query:  DRRRNLTSSTEMTNSPTFIQL
        DRRRNLTSSTEMTNSPTFIQL
Subjt:  DRRRNLTSSTEMTNSPTFIQL

XP_008457313.1 PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo]1.3e-2390.77Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT
        MVLCIYGFPT VSALQFEWAWQHPNESLAV S AATFKSLSGVANKVKLAYTMLTLPAWC   IT
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT

XP_022154854.1 structure-specific endonuclease subunit SLX1 [Momordica charantia]4.5e-2492.31Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT
        MVLCIYGFPT VSALQFEWAWQHPNESLAV S AATFKSLSGVANKVKLAYTMLTLPAWCS  IT
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT

XP_038894793.1 structure-specific endonuclease subunit SLX1 [Benincasa hispida]4.5e-2492.31Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT
        MVLCIYGFPT VSALQFEWAWQHPNESLAV S AATFKSLSGVANKVKLAYTMLTLPAWCS  IT
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT

TrEMBL top hitse value%identityAlignment
A0A1S3C574 Structure-specific endonuclease subunit SLX1 homolog6.4e-2490.77Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT
        MVLCIYGFPT VSALQFEWAWQHPNESLAV S AATFKSLSGVANKVKLAYTMLTLPAWC   IT
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT

A0A5D3BBR0 Structure-specific endonuclease subunit SLX1 homolog6.4e-2490.77Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT
        MVLCIYGFPT VSALQFEWAWQHPNESLAV S AATFKSLSGVANKVKLAYTMLTLPAWC   IT
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT

A0A6J1DNH4 Structure-specific endonuclease subunit SLX1 homolog2.2e-2492.31Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT
        MVLCIYGFPT VSALQFEWAWQHPNESLAV S AATFKSLSGVANKVKLAYTMLTLPAWCS  IT
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT

A0A6J1HKB9 Structure-specific endonuclease subunit SLX1 homolog1.1e-2387.69Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT
        MV CIYGFPT VSALQFEWAWQHPNESLAV S AATFKSLSG+ANK+KLAYTMLTLPAWCS  IT
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT

A0A6J1I681 Structure-specific endonuclease subunit SLX1 homolog1.1e-2387.69Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT
        MV CIYGFPT VSALQFEWAWQHPNESLAV S AATFKSLSG+ANK+KLAYTMLTLPAWCS  IT
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT

SwissProt top hitse value%identityAlignment
Q0IH86 Structure-specific endonuclease subunit slx11.7e-0535.53Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAW-----CSRWITKQVQME
        MVL ++GFP  ++AL+FEWAWQHP+ S  +T V    K  S     + +   ML +  W       RW+ ++ + E
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAW-----CSRWITKQVQME

Q32PI0 Structure-specific endonuclease subunit SLX18.9e-0742.37Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAW
        MVL ++GFP+ V+AL+FEWAWQHP  S  +T V    +  +  A  +++   ML  P W
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAW

Q5PQP5 Structure-specific endonuclease subunit SLX14.0e-0736.84Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCS-----RWITKQVQME
        MVL ++GFP+ V+AL+FEWAWQHP  S  +T V    +S +     +++   ML +P W       RW+    + E
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCS-----RWITKQVQME

Q8BX32 Structure-specific endonuclease subunit SLX18.0e-0839.47Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCS-----RWITKQVQME
        MVL I+GFP+ V+AL+FEWAWQHP  S  +T V    +S +  A  +++   ML +P W       RW+    + E
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCS-----RWITKQVQME

Q9BQ83 Structure-specific endonuclease subunit SLX18.9e-0734.21Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCS-----RWITKQVQME
        MVL ++GFP+ V+AL+FEWAWQHP+ S  +  V    +  +  A  +++   ML  P W       RW+   ++ +
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCS-----RWITKQVQME

Arabidopsis top hitse value%identityAlignment
AT2G30350.1 Excinuclease ABC, C subunit, N-terminal1.2e-1470.59Show/hide
Query:  LQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT
        LQFEWAWQHP ES+AV   AA FKS SGVA+K+KL YTML LPAW S  +T
Subjt:  LQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT

AT2G30350.2 Excinuclease ABC, C subunit, N-terminal3.5e-2275.38Show/hide
Query:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT
        MVLCIYGFPT VSALQFEWAWQHP ES+AV   AA FKS SGVA+K+KL YTML LPAW S  +T
Subjt:  MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWIT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTTGTGCATCTATGGCTTTCCCACTCTAGTCTCTGCTCTTCAGTTTGAATGGGCCTGGCAGCATCCGAATGAGTCGTTGGCTGTAACAAGTGTTGCTGCA
ACTTTCAAATCTCTCTCTGGCGTTGCCAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCAGCTTGGTGTAGTCGATGGATTACCAAACAGGTACAGATG
GAATACCAAATGAACTGCATGGATGCGAAAAAGAACTCGAGGGCAACAAACGAGTGCCGCCTCGTTCATGTACTCCTTATAATGATGCAGATATGTCTTATGACC
TACATGGATGTGGTAAAGAACTCGAGTCTCCTCCGTATGTCCGGGGCCAAAATGATCGAAGACGGAGCGGAAGACGAACTAGAAGGGAATGGTATGAAGTTGCAG
CAACAACAACCTGATAGAAGGAGGAATTTAACATCATCTACTGAAATGACCAATTCTCCTACGTTTATCCAATTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGTTGTGCATCTATGGCTTTCCCACTCTAGTCTCTGCTCTTCAGTTTGAATGGGCCTGGCAGCATCCGAATGAGTCGTTGGCTGTAACAAGTGTTGCTGCA
ACTTTCAAATCTCTCTCTGGCGTTGCCAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCAGCTTGGTGTAGTCGATGGATTACCAAACAGGTACAGATG
GAATACCAAATGAACTGCATGGATGCGAAAAAGAACTCGAGGGCAACAAACGAGTGCCGCCTCGTTCATGTACTCCTTATAATGATGCAGATATGTCTTATGACC
TACATGGATGTGGTAAAGAACTCGAGTCTCCTCCGTATGTCCGGGGCCAAAATGATCGAAGACGGAGCGGAAGACGAACTAGAAGGGAATGGTATGAAGTTGCAG
CAACAACAACCTGATAGAAGGAGGAATTTAACATCATCTACTGAAATGACCAATTCTCCTACGTTTATCCAATTGTAG
Protein sequenceShow/hide protein sequence
MVLCIYGFPTLVSALQFEWAWQHPNESLAVTSVAATFKSLSGVANKVKLAYTMLTLPAWCSRWITKQVQMEYQMNCMDAKKNSRATNECRLVHVLLIMMQICLMT
YMDVVKNSSLLRMSGAKMIEDGAEDELEGNGMKLQQQQPDRRRNLTSSTEMTNSPTFIQL