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CmoCh01G007530 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G007530
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionStructure-specific endonuclease subunit SLX1 homolog
Genome locationCmo_Chr01:3886714..3887615
RNA-Seq ExpressionCmoCh01G007530
SyntenyCmoCh01G007530
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR000305 - GIY-YIG endonuclease
IPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583322.1 Structure-specific endonuclease subunit SLX1, partial [Cucurbita argyrosperma subsp. sororia]6.3e-3083.53Show/hide
Query:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
        MR+RKEK EI +  AVA EE+KEDDEDE  GNE NGFFSCYLLAS CP +KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
Subjt:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP

KAG6607363.1 Structure-specific endonuclease subunit SLX1, partial [Cucurbita argyrosperma subsp. sororia]3.0e-3297.33Show/hide
Query:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRC
        MRKRKEK EISEATAVAEEEEKEDDEDEGSGN+SNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRC
Subjt:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRC

KAG7037035.1 Structure-specific endonuclease subunit SLX1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-3795.29Show/hide
Query:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
        MRKRKEK +ISEATAVAEEEEKEDDEDEGSGN+SNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCG WRTKRKRP
Subjt:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP

XP_022970648.1 uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima]6.3e-3083.53Show/hide
Query:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
        MR+RKEK EI +  AVA EE+KEDDEDE  GNE NGFFSCYLLAS CP +KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
Subjt:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP

XP_023519404.1 uncharacterized protein LOC111782823 isoform X2 [Cucurbita pepo subsp. pepo]6.3e-3083.53Show/hide
Query:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
        MR+RKEK EI +  AVA EE+KEDDEDE  GNE NGFFSCYLLAS CP +KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
Subjt:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP

TrEMBL top hitse value%identityAlignment
A0A0A0M0Y6 Structure-specific endonuclease subunit SLX1 homolog3.4e-2982.35Show/hide
Query:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
        MRKRKEK EI + T    +EEKEDDE+E  GNE NGFFSCYLLAS CP FKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
Subjt:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP

A0A6J1HKB9 Structure-specific endonuclease subunit SLX1 homolog2.6e-2982.35Show/hide
Query:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
        MR+RKEK EI +  AVA EE+KEDDEDE  GNE N FFSCYLLAS CP +KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
Subjt:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP

A0A6J1HMD6 Structure-specific endonuclease subunit SLX1 homolog2.6e-2982.35Show/hide
Query:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
        MR+RKEK EI +  AVA EE+KEDDEDE  GNE N FFSCYLLAS CP +KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
Subjt:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP

A0A6J1HZQ2 Structure-specific endonuclease subunit SLX1 homolog3.1e-3083.53Show/hide
Query:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
        MR+RKEK EI +  AVA EE+KEDDEDE  GNE NGFFSCYLLAS CP +KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
Subjt:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP

A0A6J1I681 Structure-specific endonuclease subunit SLX1 homolog3.1e-3083.53Show/hide
Query:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
        MR+RKEK EI +  AVA EE+KEDDEDE  GNE NGFFSCYLLAS CP +KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
Subjt:  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP

SwissProt top hitse value%identityAlignment
A7STV9 Structure-specific endonuclease subunit SLX1 homolog1.2e-1057.14Show/hide
Query:  DDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEI-RCGAWRTKRKRP
        DD   GS     GF   YLL  V P FKGHTYIG+TVNP RRI+QHNG + + GA++T RK+P
Subjt:  DDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEI-RCGAWRTKRKRP

P0CN80 Structure-specific endonuclease subunit SLX12.2e-0955.1Show/hide
Query:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
        F++CYLL S        TY+G T +P RRIRQHNGE++ GAW T R RP
Subjt:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP

P0CN81 Structure-specific endonuclease subunit SLX12.2e-0955.1Show/hide
Query:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
        F++CYLL S        TY+G T +P RRIRQHNGE++ GAW T R RP
Subjt:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP

Q4CTY5 Structure-specific endonuclease subunit SLX1 homolog 23.7e-0961.7Show/hide
Query:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRK
        F   YLL S+ P   G  YIG+TV+P RR+RQHNGEI  GAWRTKR+
Subjt:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRK

Q4D7L5 Structure-specific endonuclease subunit SLX1 homolog 13.7e-0961.7Show/hide
Query:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRK
        F   YLL S+ P   G  YIG+TV+P RR+RQHNGEI  GAWRTKR+
Subjt:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRK

Arabidopsis top hitse value%identityAlignment
AT2G30350.2 Excinuclease ABC, C subunit, N-terminal1.4e-1970Show/hide
Query:  EDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
        ED  +G +  GFF+CYLL S+ P  KG TYIGFTVNP+RRIRQHNGEI  GAWRTK+KRP
Subjt:  EDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP

AT5G43210.1 Excinuclease ABC, C subunit, N-terminal3.7e-0445.83Show/hide
Query:  FSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP
        +S YL+ S     K  TY+G T +  RR++QHNGEIR GA  +   RP
Subjt:  FSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAAGAGGAAAGAGAAATCGGAGATCTCTGAAGCTACGGCGGTTGCAGAGGAGGAGGAGAAGGAAGACGATGAAGATGAAGGAAGCGGCAACGAATCGAACGGCTT
CTTTTCATGCTATCTCTTGGCCTCTGTCTGCCCTTGTTTCAAAGGCCATACCTATATCGGATTCACAGTGAACCCTAAACGCAGAATCAGGCAGCACAATGGTGAAATTA
GATGCGGTGCGTGGCGTACTAAGAGGAAGAGACCATGA
mRNA sequenceShow/hide mRNA sequence
TGAATCGGGAATCGGGATGTGTTTTCGTCGGCCGGCGATAACCAGATCGGAACCCTAAGAGAGATTCGTTTCAGATTTTTAAAACTAAATTTAGGGCAACGCAAAGTTGA
CTAAAGCCTTCCGGTAAGATCGAGACGGCGAATTTCGATGCGAGACTGACAATGGGATTAAATCAATTAGGGCTAAACGACGAATTCATTTATATAAGCTAATAAATTCC
CTTTGAAGTTGTACGCCAACGGTCTAATTGTATTATTGAGCAGATTTTCTTCTTCCAGAGAGACAGAGAGATGAGGAAGAGGAAAGAGAAATCGGAGATCTCTGAAGCTA
CGGCGGTTGCAGAGGAGGAGGAGAAGGAAGACGATGAAGATGAAGGAAGCGGCAACGAATCGAACGGCTTCTTTTCATGCTATCTCTTGGCCTCTGTCTGCCCTTGTTTC
AAAGGCCATACCTATATCGGATTCACAGTGAACCCTAAACGCAGAATCAGGCAGCACAATGGTGAAATTAGATGCGGTGCGTGGCGTACTAAGAGGAAGAGACCATGA
Protein sequenceShow/hide protein sequence
MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP