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CmoCh01G007870 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G007870
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionMYB transcription factor
Genome locationCmo_Chr01:4136122..4136971
RNA-Seq ExpressionCmoCh01G007870
SyntenyCmoCh01G007870
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607398.1 Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. sororia]5.6e-4997.89Show/hide
Query:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        MTVTHSRGHWRP EDHKLQELVERHGPHNWNAIAQSLQ RSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
Subjt:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

KAG6607401.1 Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. sororia]1.4e-4796.88Show/hide
Query:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRS-GKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        MTVTHSRGHWRP EDHKLQELVERHGPHNWNAIAQSLQ RS GKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
Subjt:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRS-GKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

KAG7037067.1 Transcription factor MYB52 [Cucurbita argyrosperma subsp. argyrosperma]2.8e-4896.84Show/hide
Query:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        MTVTHSRGHWRP EDHKLQELVERHGPHNWN IAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTI GNRWAIISRLFPGRTDNA
Subjt:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

XP_022949244.1 transcription factor MYB52-like isoform X1 [Cucurbita moschata]2.3e-50100Show/hide
Query:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
Subjt:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

XP_022949245.1 transcription factor MYB52-like isoform X2 [Cucurbita moschata]2.3e-50100Show/hide
Query:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
Subjt:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

TrEMBL top hitse value%identityAlignment
A0A0B0NW29 Transcription factor MYB44-like protein3.2e-4287.78Show/hide
Query:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        SRGHWRPAED KL+ELVERHGPHNWNAIAQ LQGRSGKSCRLRWFNQLDPRINR PFT+EE++RLL+AH IHGNRWA+I+RLFPGRTDNA
Subjt:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

A0A2P5X083 Uncharacterized protein3.2e-4287.78Show/hide
Query:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        SRGHWRPAED KL+ELVERHGPHNWNAIAQ LQGRSGKSCRLRWFNQLDPRINR PFT+EE++RLL+AH IHGNRWA+I+RLFPGRTDNA
Subjt:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

A0A6J1GC83 transcription factor MYB52-like isoform X21.1e-50100Show/hide
Query:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
Subjt:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

A0A6J1GCA0 transcription factor MYB52-like isoform X11.1e-50100Show/hide
Query:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
Subjt:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

A0A6J1KBV1 transcription factor MYB52-like4.5e-4489.47Show/hide
Query:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        M VTHSRGHW  A++HKLQ LVERH PHNWN IAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFP RT+NA
Subjt:  MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

SwissProt top hitse value%identityAlignment
Q5NBM8 Transcription factor CSA8.7e-3773.33Show/hide
Query:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        +RGHWRPAED KL++LV ++GP NWN IA+ L GRSGKSCRLRWFNQLDPRINR  FT+EE++RL+AAH  +GN+WA+I+RLFPGRTDNA
Subjt:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

Q6R0C4 Transcription factor MYB525.3e-4282.22Show/hide
Query:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        SRGHWRPAED KL+ELVE+ GPHNWNAIAQ L GRSGKSCRLRWFNQLDPRINR+PFT+EE++RLLA+H IHGNRW++I+R FPGRTDNA
Subjt:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

Q9FX36 Transcription factor MYB545.3e-4283.33Show/hide
Query:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        SRGHWRPAED KL++LVE++GPHNWNAIA  L GRSGKSCRLRWFNQLDPRINR+PFT+EE++RLLAAH IHGNRW+II+RLFPGRTDNA
Subjt:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

Q9LQX5 Transcription factor MYB1171.9e-3674.16Show/hide
Query:  RGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        RGHWRPAED KL+ELV  +GP NWN IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+EE++RL+ AH ++GN+WA+I+RLFPGRTDN+
Subjt:  RGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

Q9SEZ4 Transcription factor MYB1056.7e-3774.44Show/hide
Query:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        SRGHWRPAED KL+ELV  +GP NWN IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+EE++RL+ AH ++GN+WA+I+RLFPGRTDN+
Subjt:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

Arabidopsis top hitse value%identityAlignment
AT1G17950.1 myb domain protein 523.7e-4382.22Show/hide
Query:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        SRGHWRPAED KL+ELVE+ GPHNWNAIAQ L GRSGKSCRLRWFNQLDPRINR+PFT+EE++RLLA+H IHGNRW++I+R FPGRTDNA
Subjt:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

AT1G26780.1 myb domain protein 1171.4e-3774.16Show/hide
Query:  RGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        RGHWRPAED KL+ELV  +GP NWN IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+EE++RL+ AH ++GN+WA+I+RLFPGRTDN+
Subjt:  RGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

AT1G26780.2 myb domain protein 1171.4e-3774.16Show/hide
Query:  RGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        RGHWRPAED KL+ELV  +GP NWN IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+EE++RL+ AH ++GN+WA+I+RLFPGRTDN+
Subjt:  RGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

AT1G69560.1 myb domain protein 1054.7e-3874.44Show/hide
Query:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        SRGHWRPAED KL+ELV  +GP NWN IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+EE++RL+ AH ++GN+WA+I+RLFPGRTDN+
Subjt:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA

AT1G73410.1 myb domain protein 543.7e-4383.33Show/hide
Query:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA
        SRGHWRPAED KL++LVE++GPHNWNAIA  L GRSGKSCRLRWFNQLDPRINR+PFT+EE++RLLAAH IHGNRW+II+RLFPGRTDNA
Subjt:  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGTGACACACAGTAGAGGTCACTGGCGCCCTGCGGAAGACCACAAGCTGCAGGAGCTGGTGGAGCGACATGGCCCTCATAACTGGAACGCCATTGCTCAAAGCCT
TCAAGGAAGATCCGGAAAGAGCTGCCGTTTGAGATGGTTTAATCAGTTGGATCCTCGCATAAACAGAGACCCCTTCACCCAAGAGGAAGACCAGAGGCTGTTGGCGGCGC
ATACCATTCATGGCAACAGATGGGCCATCATCTCTAGGCTTTTCCCTGGGCGCACTGACAATGCGACCACTCGAGAAAAGATCGAAAAGATGATGAAGAAGTTAATCAAA
AAGCTGCCACAACCGCCTACACCAGCCATGACGTTGTTGTTCGAGGAACCCACAAGGATGAGGAGAAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATTGAGCGCAGGAAGCAACCAAGCCAAGCCAAGCTGTGCGTTTGGTTTGGTTTGGTTTGGATTTCTTATTAATTGTTAGATCAGGGAAGGAAGGAAGGCAATCCCTTCTG
GATCTAGACGAGCATGACCGTGACACACAGTAGAGGTCACTGGCGCCCTGCGGAAGACCACAAGCTGCAGGAGCTGGTGGAGCGACATGGCCCTCATAACTGGAACGCCA
TTGCTCAAAGCCTTCAAGGAAGATCCGGAAAGAGCTGCCGTTTGAGATGGTTTAATCAGTTGGATCCTCGCATAAACAGAGACCCCTTCACCCAAGAGGAAGACCAGAGG
CTGTTGGCGGCGCATACCATTCATGGCAACAGATGGGCCATCATCTCTAGGCTTTTCCCTGGGCGCACTGACAATGCGACCACTCGAGAAAAGATCGAAAAGATGATGAA
GAAGTTAATCAAAAAGCTGCCACAACCGCCTACACCAGCCATGACGTTGTTGTTCGAGGAACCCACAAGGATGAGGAGAAGGTAG
Protein sequenceShow/hide protein sequence
MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNATTREKIEKMMKKLIK
KLPQPPTPAMTLLFEEPTRMRRR