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CmoCh01G007960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G007960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontetratricopeptide repeat protein 1
Genome locationCmo_Chr01:4193513..4197431
RNA-Seq ExpressionCmoCh01G007960
SyntenyCmoCh01G007960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607412.1 hypothetical protein SDJN03_00754, partial [Cucurbita argyrosperma subsp. sororia]1.0e-2995.71Show/hide
Query:  LVVYETAALALTLAIKQLSGGGCDSIGRATFPAVKIVPPFTEWQCWSIMILAQRNHSGDLEDANEALGLH
        LVVYETAALALTLAIKQLSGGGCDSIGRATFPAVKIVPPFTEWQCWSIM LAQRNHSGDLEDANEALG++
Subjt:  LVVYETAALALTLAIKQLSGGGCDSIGRATFPAVKIVPPFTEWQCWSIMILAQRNHSGDLEDANEALGLH

KAG7037078.1 hypothetical protein SDJN02_00699, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-5060.8Show/hide
Query:  VPFRHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIG--------------------------RATFPAVKI----------------------
        +P RHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIG                             F  +K+                      
Subjt:  VPFRHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIG--------------------------RATFPAVKI----------------------

Query:  -----------VPPFTEWQCWSIMILAQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHSRCELLNFRRDSVPCIHNKF
                   + P       SIM LAQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHSRCELLNFRRDSVPCIHNKF
Subjt:  -----------VPPFTEWQCWSIMILAQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHSRCELLNFRRDSVPCIHNKF

XP_022137239.1 sperm-associated antigen 1 [Momordica charantia]2.8e-0659.68Show/hide
Query:  SIMILAQRNHSGDLEDANEAL--------GLHLQRYAFLTKDHFDSAATLYSTALKFDPSIR
        SI+ LAQ N+SG LEDANEAL        G   Q  AF   DHFDSA T YSTAL+ DPSIR
Subjt:  SIMILAQRNHSGDLEDANEAL--------GLHLQRYAFLTKDHFDSAATLYSTALKFDPSIR

XP_022948525.1 uncharacterized protein LOC111452178 isoform X1 [Cucurbita moschata]5.8e-8187.43Show/hide
Query:  MKATLYPLLSLRFSTISSQIILFQFVLTTRRFESAPIAFAAVKVPFRHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIGRATFPAVKIVPPFT
        MKATLYPLLSLRFSTISSQIILFQFVLTTRRFESAPIAFAAVKVPFRHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIG     ++K +  +T
Subjt:  MKATLYPLLSLRFSTISSQIILFQFVLTTRRFESAPIAFAAVKVPFRHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIGRATFPAVKIVPPFT

Query:  ----EWQCW----SIMILAQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHSRCELLNFRRDSVPCIHNKF
             W+      SIMILAQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHSRCELLNFRRDSVPCIHNKF
Subjt:  ----EWQCW----SIMILAQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHSRCELLNFRRDSVPCIHNKF

XP_022948526.1 uncharacterized protein LOC111452178 isoform X2 [Cucurbita moschata]3.1e-7483.77Show/hide
Query:  MKATLYPLLSLRFSTISSQIILFQFVLTTRRFESAPIAFAAVKVPFRHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIGRATFPAVKIVPPFT
        MKATLYPLLSLRFSTISSQIILFQFVLTTRRFESAPIAFAAVKVPFRHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIG     ++K +  +T
Subjt:  MKATLYPLLSLRFSTISSQIILFQFVLTTRRFESAPIAFAAVKVPFRHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIGRATFPAVKIVPPFT

Query:  ----EWQCW----SIMILAQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHSRCELLNFRRDSVPCIHNKF
             W+      SIMILAQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHS       RRDSVPCIHNKF
Subjt:  ----EWQCW----SIMILAQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHSRCELLNFRRDSVPCIHNKF

TrEMBL top hitse value%identityAlignment
A0A0A0LQA2 TPR_REGION domain-containing protein2.3e-0659.68Show/hide
Query:  SIMILAQRNHSGDLEDANEALGL---HLQRY-----AFLTKDHFDSAATLYSTALKFDPSIR
        SI+ LA  NHSG LEDANEAL +   +L+ Y     AFL  DHFDSA   YSTAL+ DPSIR
Subjt:  SIMILAQRNHSGDLEDANEALGL---HLQRY-----AFLTKDHFDSAATLYSTALKFDPSIR

A0A1S3AUF9 tetratricopeptide repeat protein 19.6e-0554.84Show/hide
Query:  SIMILAQRNHSGDLEDANEALGL---HLQRY-----AFLTKDHFDSAATLYSTALKFDPSIR
        S++ LA  NHSG LEDANEAL +   +L+ Y      FL  D FDSA   YSTAL+ DPSIR
Subjt:  SIMILAQRNHSGDLEDANEALGL---HLQRY-----AFLTKDHFDSAATLYSTALKFDPSIR

A0A6J1C6P2 sperm-associated antigen 11.3e-0659.68Show/hide
Query:  SIMILAQRNHSGDLEDANEAL--------GLHLQRYAFLTKDHFDSAATLYSTALKFDPSIR
        SI+ LAQ N+SG LEDANEAL        G   Q  AF   DHFDSA T YSTAL+ DPSIR
Subjt:  SIMILAQRNHSGDLEDANEAL--------GLHLQRYAFLTKDHFDSAATLYSTALKFDPSIR

A0A6J1G9F6 uncharacterized protein LOC111452178 isoform X21.5e-7483.77Show/hide
Query:  MKATLYPLLSLRFSTISSQIILFQFVLTTRRFESAPIAFAAVKVPFRHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIGRATFPAVKIVPPFT
        MKATLYPLLSLRFSTISSQIILFQFVLTTRRFESAPIAFAAVKVPFRHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIG     ++K +  +T
Subjt:  MKATLYPLLSLRFSTISSQIILFQFVLTTRRFESAPIAFAAVKVPFRHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIGRATFPAVKIVPPFT

Query:  ----EWQCW----SIMILAQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHSRCELLNFRRDSVPCIHNKF
             W+      SIMILAQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHS       RRDSVPCIHNKF
Subjt:  ----EWQCW----SIMILAQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHSRCELLNFRRDSVPCIHNKF

A0A6J1GA38 uncharacterized protein LOC111452178 isoform X12.8e-8187.43Show/hide
Query:  MKATLYPLLSLRFSTISSQIILFQFVLTTRRFESAPIAFAAVKVPFRHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIGRATFPAVKIVPPFT
        MKATLYPLLSLRFSTISSQIILFQFVLTTRRFESAPIAFAAVKVPFRHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIG     ++K +  +T
Subjt:  MKATLYPLLSLRFSTISSQIILFQFVLTTRRFESAPIAFAAVKVPFRHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIGRATFPAVKIVPPFT

Query:  ----EWQCW----SIMILAQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHSRCELLNFRRDSVPCIHNKF
             W+      SIMILAQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHSRCELLNFRRDSVPCIHNKF
Subjt:  ----EWQCW----SIMILAQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHSRCELLNFRRDSVPCIHNKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCGACTCTATATCCTCTGCTTTCCTTGCGCTTCTCTACCATTTCTTCCCAAATCATACTCTTCCAATTCGTTCTCACAACCAGGAGATTCGAGTCTGCACCAAT
CGCATTTGCTGCGGTCAAGGTTCCTTTCAGACACTCCGAACTCTCAGCGGCGTCGCACCTTCCTCCATTGGTTGTTTACGAAACTGCGGCGCTGGCCCTAACGTTGGCCA
TAAAGCAGTTGTCTGGTGGAGGCTGTGATTCTATCGGCCGAGCCACTTTTCCTGCAGTTAAAATTGTTCCGCCTTTTACTGAGTGGCAATGTTGGTCTATCATGATATTA
GCACAGCGGAACCATTCTGGGGACCTTGAAGATGCAAATGAAGCTCTAGGCTTACATTTGCAAAGGTACGCATTCTTAACTAAGGACCATTTTGATTCAGCTGCGACGCT
ATATTCAACAGCTTTAAAATTTGATCCTTCAATTCGCCTTCAGAACCATTCAAGGTGTGAGTTGCTAAATTTCAGGAGAGACTCGGTGCCGTGCATACACAACAAATTCT
GA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCGACTCTATATCCTCTGCTTTCCTTGCGCTTCTCTACCATTTCTTCCCAAATCATACTCTTCCAATTCGTTCTCACAACCAGGAGATTCGAGTCTGCACCAAT
CGCATTTGCTGCGGTCAAGGTTCCTTTCAGACACTCCGAACTCTCAGCGGCGTCGCACCTTCCTCCATTGGTTGTTTACGAAACTGCGGCGCTGGCCCTAACGTTGGCCA
TAAAGCAGTTGTCTGGTGGAGGCTGTGATTCTATCGGCCGAGCCACTTTTCCTGCAGTTAAAATTGTTCCGCCTTTTACTGAGTGGCAATGTTGGTCTATCATGATATTA
GCACAGCGGAACCATTCTGGGGACCTTGAAGATGCAAATGAAGCTCTAGGCTTACATTTGCAAAGGTACGCATTCTTAACTAAGGACCATTTTGATTCAGCTGCGACGCT
ATATTCAACAGCTTTAAAATTTGATCCTTCAATTCGCCTTCAGAACCATTCAAGGTGTGAGTTGCTAAATTTCAGGAGAGACTCGGTGCCGTGCATACACAACAAATTCT
GAGAACAAAAATAATGATGACACAGTTCGAGATTCAGTCGTGCATTCAGGGATTCCCTGTTCATTATCTTACTGTCTTCCTCAAATTAGACCACAGCAAAAAGCAGATAA
AAGTTGGTGTCATAAGTACCAACAAAAAACTTCCACGAAGTTATTTATAAGGGATTGGGGATTGGCAATCTTACTACTGCAGCTGCTACTGAATATCTAGTTAGGGATGG
CTTTCCCAACCCAAGTATAGTAGAGAGGCAAAAGGAATTATTACACAGGATTGGTGCTATGACCACATAAAAACATGTCCATGCTCTTCACCTTTGCCCACCACCTGTAG
GTCTTCCTCCCGCTGTTACTTTTTCTGTCACTGCCGCTGTTGTTGATGACACCCGAATGATGCCTCTTCGACTTGAGTTTTCTAATCTGAAAGCACGCCTCCAAGCCCAT
GAATCTGTCCCTGTAGATCTTCTATTTTCTGGTTGAGTAGACTCCGCTACCAGCCCTTTGTTTTCTTCCATCAAGGAAGACACCCTATATCCCAATCTTGCATTTTCATT
CAGTAATATAAGCCTTTCAGACTCCAAAACCTCAAGCAAACTCTTCTGAAGCTCGATCTTCGTCGATGAATCACCACATTGCTTTTCCAGGATGCTTACCTCATTTATAA
GAATGTCATACTCCACATTCTTGATGACAATCTCCGCAACAAAGGCATCATTGTATACCATAGGATAGTTTTTAGCTGGTATTATAACTGATACTTGCTGGTAGGAGAGA
GAGCTCTCTGCATCGGACTCGATTTGACTGATCCCTGAATCTTCGACTCCATCGAAGGAGTCGAGGGTTGAAGTAACAGAAGAGTGCCTGTTGTGATGATGGTTGTGACG
TTTGGCAATGGTTTGAATGTAGCGATCGGATAAGGTGGTGTAAGCAGTGTACAGTTCTTGGAGAAGCGCCAGCAGTTGAGGACGTTTGTTGTAGTAAAATTCTGCACGTT
CGGCAAAACTGTCTCCTGCGTCGTGCTCTCCAGCATTTTTCATAGCAAGTAAATTCATCTTCTGCTCCATATCTGCCATAGCACAACACGAGCAAGACAACTTACAAGCT
ATATCATGTAATTGGATCTTCTAACCACGATTGTTGGACCCAAAGTTAAAACTCATTTGATAATCATTTGTTATTTGATTTTTAATTTTGGTATTTGAAAATTGTGCCT
Protein sequenceShow/hide protein sequence
MKATLYPLLSLRFSTISSQIILFQFVLTTRRFESAPIAFAAVKVPFRHSELSAASHLPPLVVYETAALALTLAIKQLSGGGCDSIGRATFPAVKIVPPFTEWQCWSIMIL
AQRNHSGDLEDANEALGLHLQRYAFLTKDHFDSAATLYSTALKFDPSIRLQNHSRCELLNFRRDSVPCIHNKF