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CmoCh01G008160 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G008160
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor PRE5-like
Genome locationCmo_Chr01:4370015..4370892
RNA-Seq ExpressionCmoCh01G008160
SyntenyCmoCh01G008160
Gene Ontology termsGO:0050789 - regulation of biological process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044172 - Transcription factor ILI2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607436.1 Transcription factor PRE4, partial [Cucurbita argyrosperma subsp. sororia]4.0e-3495Show/hide
Query:  MASSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVKRGLN
        MASSKFRD +IKNLV KLHTLLPQLNHKFD SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVKRGLN
Subjt:  MASSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVKRGLN

KAG7020038.1 Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]2.5e-2067.5Show/hide
Query:  MASSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVKRGLN
        MASS   D +++NL+ +L TLLPQLNH    S V  AEILKETCD IKKL+RE+DDLSERLW+QL+SMGVD EMVK  LN
Subjt:  MASSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVKRGLN

KAG7037094.1 Transcription factor PRE4 [Cucurbita argyrosperma subsp. argyrosperma]2.0e-3092.11Show/hide
Query:  MASSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVK
        MASSKFRD EIKNLV KLHTL PQLNHKFD SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLE +GVDLEMVK
Subjt:  MASSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVK

XP_008440200.1 PREDICTED: transcription factor PRE5-like [Cucumis melo]1.1e-2072.73Show/hide
Query:  MASSKFRDHEIKNLVFKLHTLLPQLNHKFDR-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVK
        MASSK  D+E+KNLV KL TLLPQLNHK D  S+    EILKETCD IKKL++E+DDLSERLW+QL+SMGVD EMVK
Subjt:  MASSKFRDHEIKNLVFKLHTLLPQLNHKFDR-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVK

XP_011649678.1 transcription factor PRE5 [Cucumis sativus]8.6e-2172.73Show/hide
Query:  MASSKFRDHEIKNLVFKLHTLLPQLNHK-FDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVK
        MASSK  D E+KNLV KL TLLPQLNHK  + S+V   EILKETCD IKKL+RE+DDLSERLW+QL+SMG+D EMVK
Subjt:  MASSKFRDHEIKNLVFKLHTLLPQLNHK-FDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVK

TrEMBL top hitse value%identityAlignment
A0A0A0LQ05 DNA binding protein4.2e-2172.73Show/hide
Query:  MASSKFRDHEIKNLVFKLHTLLPQLNHK-FDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVK
        MASSK  D E+KNLV KL TLLPQLNHK  + S+V   EILKETCD IKKL+RE+DDLSERLW+QL+SMG+D EMVK
Subjt:  MASSKFRDHEIKNLVFKLHTLLPQLNHK-FDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVK

A0A1S3B0J1 transcription factor PRE5-like5.4e-2172.73Show/hide
Query:  MASSKFRDHEIKNLVFKLHTLLPQLNHKFDR-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVK
        MASSK  D+E+KNLV KL TLLPQLNHK D  S+    EILKETCD IKKL++E+DDLSERLW+QL+SMGVD EMVK
Subjt:  MASSKFRDHEIKNLVFKLHTLLPQLNHKFDR-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVK

A0A5A7SZP9 Transcription factor PRE5-like5.4e-2172.73Show/hide
Query:  MASSKFRDHEIKNLVFKLHTLLPQLNHKFDR-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVK
        MASSK  D+E+KNLV KL TLLPQLNHK D  S+    EILKETCD IKKL++E+DDLSERLW+QL+SMGVD EMVK
Subjt:  MASSKFRDHEIKNLVFKLHTLLPQLNHKFDR-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVK

A0A5B6V213 Transcription factor ILI3-like6.2e-0950Show/hide
Query:  ASSKFRDHEIKNLVFKLHTLLPQLNH-KFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGV
        AS+K  D E+  L+ +L TLLPQLNH +  R+     +ILKETC  I++L++E+DDLSERL + L+SM +
Subjt:  ASSKFRDHEIKNLVFKLHTLLPQLNH-KFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGV

A0A5D3BKI2 Transcription factor PRE5-like7.9e-2072Show/hide
Query:  MASSKFRDHEIKNLVFKLHTLLPQLNHKFDR-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEM
        MASSK  D+E+KNLV KL TLLPQLNHK D  S+    EILKETCD IKKL++E+DDLSERLW+QL+SMGVD EM
Subjt:  MASSKFRDHEIKNLVFKLHTLLPQLNHKFDR-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEM

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI78.7e-0842.5Show/hide
Query:  ASSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEM--VKRGL
        ++++  D +I +LV KL  LLP+   +    +VP A +L+ETC  I+ L RE+DDLSERL E L +  V      V RGL
Subjt:  ASSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEM--VKRGL

F4JCN9 Transcription factor PRE47.9e-0946.15Show/hide
Query:  SSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLES
        +S   D +I +LV +LH LLP+L +     KV  + +L+ETC  I+ L +E+DDLSERL + LES
Subjt:  SSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLES

Q338G6 Transcription factor ILI78.7e-0842.5Show/hide
Query:  ASSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEM--VKRGL
        ++++  D +I +LV KL  LLP+   +    +VP A +L+ETC  I+ L RE+DDLSERL E L +  V      V RGL
Subjt:  ASSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEM--VKRGL

Q9CA64 Transcription factor PRE38.7e-0844.44Show/hide
Query:  SSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQL
        +S+  + +I +L+ KL  LLP+L       KV  A +L++TC+ I+ L RE+DDLSERL E L
Subjt:  SSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQL

Q9LJX1 Transcription factor PRE58.7e-0839.13Show/hide
Query:  SSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVD
        +S+  D ++ +LV KL   LP+++ +    KV  +++L+ETC+ I+KL RE+D+LS+RL + L+S+  D
Subjt:  SSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVD

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.1e-0846.15Show/hide
Query:  SSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLES
        SS+  D +I +LV KL  L+P+L  +    KV  +++L+ETC+ I+ L RE+DDLS+RL E L S
Subjt:  SSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLES

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 16.2e-0944.44Show/hide
Query:  SSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQL
        +S+  + +I +L+ KL  LLP+L       KV  A +L++TC+ I+ L RE+DDLSERL E L
Subjt:  SSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein6.2e-0939.13Show/hide
Query:  SSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVD
        +S+  D ++ +LV KL   LP+++ +    KV  +++L+ETC+ I+KL RE+D+LS+RL + L+S+  D
Subjt:  SSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVD

AT3G47710.1 BANQUO 35.6e-1046.15Show/hide
Query:  SSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLES
        +S   D +I +LV +LH LLP+L +     KV  + +L+ETC  I+ L +E+DDLSERL + LES
Subjt:  SSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLES

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.4e-0837.14Show/hide
Query:  ASSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVD
        ++ +  D+++ +LV KL  +LP++  +    K   +++L+ETC+ I+ L RE+D+LSERL + LES+  D
Subjt:  ASSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCCAAATTTCGCGACCACGAGATTAAAAATCTTGTCTTCAAATTGCACACTTTGCTCCCTCAGCTCAACCATAAGTTCGACCGCTCTAAGGTACCA
ATAGCAGAAATTTTGAAGGAGACATGTGATTGTATAAAAAAATTAGAGAGGGAGATAGACGATCTAAGTGAGAGGCTATGGGAGCAGCTCGAGTCAATGGGAGTT
GACTTAGAAATGGTCAAAAGAGGACTGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTCCAAATTTCGCGACCACGAGATTAAAAATCTTGTCTTCAAATTGCACACTTTGCTCCCTCAGCTCAACCATAAGTTCGACCGCTCTAAGGTACCA
ATAGCAGAAATTTTGAAGGAGACATGTGATTGTATAAAAAAATTAGAGAGGGAGATAGACGATCTAAGTGAGAGGCTATGGGAGCAGCTCGAGTCAATGGGAGTT
GACTTAGAAATGGTCAAAAGAGGACTGAATTGAGATAAACTAAGATCTCACGAATTGGAGACACAACCCTAAGGTCGATCTCGTCTTCAAGCTATGGCCGATAGA
GAACCCGTGCTTCATCTGAAGTTTCTCTTCTTTCACCTATTTGGTGGCTTGGATTTCTTCTTGTATTGGACTTTTTTTCTTTATTTAGTCTTTGAACTACGTGAT
CTATTATGTTTGTCCATGATCTTTTATATTTGTTCTTGTAATCTAATTCCAC
Protein sequenceShow/hide protein sequence
MASSKFRDHEIKNLVFKLHTLLPQLNHKFDRSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLESMGVDLEMVKRGLN