; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G008560 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G008560
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLYR motif-containing protein 4
Genome locationCmo_Chr01:4550837..4551802
RNA-Seq ExpressionCmoCh01G008560
SyntenyCmoCh01G008560
Gene Ontology termsNA
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5807263.1 putative complex 1 LYR protein [Helianthus annuus]2.3e-2979.07Show/hide
Query:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDV
        MA PSRSEILTLFRSLLR+ARQFPDYNIREYTKRRTIDAFR N++LS+PSSI++ ++ G++QL+VAKRQA+VYSLYAPK+KSIMD+
Subjt:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDV

KAG6607477.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia]7.8e-38100Show/hide
Query:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVNS
        MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVNS
Subjt:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVNS

KGN64034.1 hypothetical protein Csa_014098 [Cucumis sativus]7.6e-3389.66Show/hide
Query:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVN
        MA PS SEIL+LFRSLLRTARQFPDYNIREY KRRTID+FRENQ+LSD SSISSVYAGG+AQLEVAKRQA+VYSLYAPKVKSIMDVN
Subjt:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVN

XP_022137452.1 LYR motif-containing protein 4 [Momordica charantia]2.6e-3393.02Show/hide
Query:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDV
        MA PSRSEIL+LFRSLLRTARQF DYNIREYTKRR IDAFREN+SLSDPSSISS YAGGKAQLEVAKRQALVYSLYAPKVKSIMDV
Subjt:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDV

XP_038894896.1 LYR motif-containing protein 4 [Benincasa hispida]6.2e-3594.25Show/hide
Query:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVN
        MA PSRSE+L+LFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSD SSISS YAGGKAQLEVAKRQALVYSLYAPKVKSIMDVN
Subjt:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVN

TrEMBL top hitse value%identityAlignment
A0A0A0LST7 Uncharacterized protein3.7e-3389.66Show/hide
Query:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVN
        MA PS SEIL+LFRSLLRTARQFPDYNIREY KRRTID+FRENQ+LSD SSISSVYAGG+AQLEVAKRQA+VYSLYAPKVKSIMDVN
Subjt:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVN

A0A1J6JR59 Uncharacterized protein2.5e-2974.71Show/hide
Query:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVN
        MA+PSR E+LTLFRSLL+TARQFPDYNIREYTKRRTIDAF++N+ LSDPS +++ ++ G++QLEVAKRQA+VYSLYAPKVKS+M++N
Subjt:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVN

A0A1S3XFP4 LYR motif-containing protein 41.4e-2975.86Show/hide
Query:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVN
        MA+PSR E+LTLFRSLL+TARQFPDYNIREYTKRRTID FR+N+ LSDPS +++ ++ G+AQLEVAKRQA+VYSLYAPKVKS+M++N
Subjt:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVN

A0A251UU63 Putative complex 1 LYR protein1.1e-2979.07Show/hide
Query:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDV
        MA PSRSEILTLFRSLLR+ARQFPDYNIREYTKRRTIDAFR N++LS+PSSI++ ++ G++QL+VAKRQA+VYSLYAPK+KSIMD+
Subjt:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDV

A0A6J1C8A4 LYR motif-containing protein 41.3e-3393.02Show/hide
Query:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDV
        MA PSRSEIL+LFRSLLRTARQF DYNIREYTKRR IDAFREN+SLSDPSSISS YAGGKAQLEVAKRQALVYSLYAPKVKSIMDV
Subjt:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDV

SwissProt top hitse value%identityAlignment
B5FZA8 LYR motif-containing protein 46.5e-1145.45Show/hide
Query:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYA
        MAA SR+++L L+R+LLR +++F  YN R Y  RR  DAFREN++++D   I  +    KA LEV +RQ  +  +YA
Subjt:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYA

B5XD90 LYR motif-containing protein 4B1.0e-0834.94Show/hide
Query:  APSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMD
        A   +++L+L+R L++ + +FP YN R Y  RR  DAFR N+S+ DP  +  +   G+  L++ +RQ  +  +Y P  K+I++
Subjt:  APSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMD

Q0VCG0 LYR motif-containing protein 43.6e-0940.26Show/hide
Query:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYA
        MAA SR+++L L+R++LR +++F  YN R Y  RR  DAFREN+++ DP  I ++    K  L + +RQ  +  +Y+
Subjt:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYA

Q8K215 LYR motif-containing protein 45.5e-1041.56Show/hide
Query:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYA
        MAA SR+++L L+R+++R ++ F  YN R Y  RR  DAFREN+++ DP  I ++    K  LE+ +RQ  +  LY+
Subjt:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYA

Q9HD34 LYR motif-containing protein 45.5e-1042.86Show/hide
Query:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYA
        MAA SR+++L+L+R++LR +++F  YN R Y  RR  DAFREN+++ DP  I ++    K  L V +RQ  +  LY+
Subjt:  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYA

Arabidopsis top hitse value%identityAlignment
AT5G61220.1 LYR family of Fe/S cluster biogenesis protein5.4e-2159.76Show/hide
Query:  SRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDV
        S SE+L+L R+LLR  RQFPDYNIREY+KRRT+D FR N++L+DPS ++  YA  K QL VA+R   VY  Y PK K+IM+V
Subjt:  SRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGKAQLEVAKRQALVYSLYAPKVKSIMDV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAATTTGTGTGCCACTCCCAATCCCTTCCTTTCTTATTGGGTGCGGAAAATTAATCGAGCTATTACCTGTCTTTGTAGAAATCTCAAGTCATCTCTCTCGTTTGA
TTCATTTCTTCTCTATCCGTCGTCTCTTCACTCTCCACAGATGGCGGCTCCATCGAGGTCTGAAATCCTCACGCTCTTTCGTTCCCTTCTTCGCACGGCGCGTCAATTCC
CCGATTACAACATCAGAGAATACACCAAACGCCGCACCATTGATGCCTTCCGAGAAAATCAGAGCCTCTCTGACCCTTCATCCATCTCCTCCGTATACGCTGGCGGAAAA
GCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGTATCATGGATGTCAACTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATAATTTGTGTGCCACTCCCAATCCCTTCCTTTCTTATTGGGTGCGGAAAATTAATCGAGCTATTACCTGTCTTTGTAGAAATCTCAAGTCATCTCTCTCGTTTGA
TTCATTTCTTCTCTATCCGTCGTCTCTTCACTCTCCACAGATGGCGGCTCCATCGAGGTCTGAAATCCTCACGCTCTTTCGTTCCCTTCTTCGCACGGCGCGTCAATTCC
CCGATTACAACATCAGAGAATACACCAAACGCCGCACCATTGATGCCTTCCGAGAAAATCAGAGCCTCTCTGACCCTTCATCCATCTCCTCCGTATACGCTGGCGGAAAA
GCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGTATCATGGATGTCAACTCCTGA
Protein sequenceShow/hide protein sequence
MHNLCATPNPFLSYWVRKINRAITCLCRNLKSSLSFDSFLLYPSSLHSPQMAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGK
AQLEVAKRQALVYSLYAPKVKSIMDVNS