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CmoCh01G008780 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G008780
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTransmembrane protein
Genome locationCmo_Chr01:4777424..4779047
RNA-Seq ExpressionCmoCh01G008780
SyntenyCmoCh01G008780
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607498.1 hypothetical protein SDJN03_00840, partial [Cucurbita argyrosperma subsp. sororia]6.6e-4598.1Show/hide
Query:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVE
        MSRSRSSISLQ LSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAF VILFKLWQKKKREEQHARLLKLFEDDDELEVE
Subjt:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVE

Query:  LGLRD
        LGLRD
Subjt:  LGLRD

KAG7037155.1 hypothetical protein SDJN02_00777, partial [Cucurbita argyrosperma subsp. argyrosperma]6.6e-4598.1Show/hide
Query:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVE
        MSRSRSSISLQ LSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAF VILFKLWQKKKREEQHARLLKLFEDDDELEVE
Subjt:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVE

Query:  LGLRD
        LGLRD
Subjt:  LGLRD

XP_022949107.1 uncharacterized protein LOC111452561 [Cucurbita moschata]1.6e-46100Show/hide
Query:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVE
        MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVE
Subjt:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVE

Query:  LGLRD
        LGLRD
Subjt:  LGLRD

XP_023525282.1 uncharacterized protein LOC111788931 [Cucurbita pepo subsp. pepo]9.5e-4497.14Show/hide
Query:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVE
        MSRSRSSISLQ LSFLLSLSLHSLSVLAGDHSSAKDGKTKK DAPKSPSTGIKMLIICLGVVTFIAF VILFKLWQKKKREEQHARLLKLFEDDDELEVE
Subjt:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVE

Query:  LGLRD
        LGLRD
Subjt:  LGLRD

XP_038890666.1 uncharacterized protein LOC120080166 [Benincasa hispida]1.9e-3179.25Show/hide
Query:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKD-GKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEV
        MS S+SS SLQ L F+  L LHSLSVLA DHSSAKD GK+KK DA +SPS  IK++IICLGVVT IAF VILFK+WQKKKREEQHARLLKLFEDDDELEV
Subjt:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKD-GKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEV

Query:  ELGLRD
        ELGLRD
Subjt:  ELGLRD

TrEMBL top hitse value%identityAlignment
A0A1S3CA76 uncharacterized protein LOC1034987102.6e-3179.44Show/hide
Query:  MSRSRSSISLQVLSFLLS-LSLHSLSVLAGDHSSAKD-GKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELE
        MS S+SS SLQ L FL + + LHSLSVLA D+SSAKD GKTKK D  +SPS GIK+LIICLGVVT IAF VILFK+WQKKKREEQHARLLKLFEDDDELE
Subjt:  MSRSRSSISLQVLSFLLS-LSLHSLSVLAGDHSSAKD-GKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELE

Query:  VELGLRD
        VELGLRD
Subjt:  VELGLRD

A0A5A7TC90 Uncharacterized protein2.6e-3179.44Show/hide
Query:  MSRSRSSISLQVLSFLLS-LSLHSLSVLAGDHSSAKD-GKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELE
        MS S+SS SLQ L FL + + LHSLSVLA D+SSAKD GKTKK D  +SPS GIK+LIICLGVVT IAF VILFK+WQKKKREEQHARLLKLFEDDDELE
Subjt:  MSRSRSSISLQVLSFLLS-LSLHSLSVLAGDHSSAKD-GKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELE

Query:  VELGLRD
        VELGLRD
Subjt:  VELGLRD

A0A6J1EBZ0 uncharacterized protein LOC1114326785.8e-3176.64Show/hide
Query:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAK--DGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELE
        MSRS+SS SLQ LSFL SLSLHSLSVLA +HSSA+  DGK KK D  +S S GIK+++ICLGVVT IAF VIL K+WQ+KKREEQHARLLKLFEDDDELE
Subjt:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAK--DGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELE

Query:  VELGLRD
        +ELGLRD
Subjt:  VELGLRD

A0A6J1GB46 uncharacterized protein LOC1114525617.6e-47100Show/hide
Query:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVE
        MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVE
Subjt:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVE

Query:  LGLRD
        LGLRD
Subjt:  LGLRD

A0A6J1ICT0 uncharacterized protein LOC1114726071.0e-3075.7Show/hide
Query:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAK--DGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELE
        MSRS+SS SLQ LSFL SLSLHSLSVLA +HSSA+  DGK KK D  +S S GIK+++ICLGVVT +AF VIL K+WQ+KKREEQHARLLKLFEDDDELE
Subjt:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAK--DGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELE

Query:  VELGLRD
        +ELGLRD
Subjt:  VELGLRD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09645.1 unknown protein8.1e-1750.51Show/hide
Query:  ISLQVLSFLLSLSLHSLSVLAGDHSSAKDG-KTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD
        +S + L F  S+ L     L+GD  +   G KT+ H +  S  TG K++++ +G V    F   L+KLWQKKKR+EQ+ARLLKLFE+DDELEVELGLRD
Subjt:  ISLQVLSFLLSLSLHSLSVLAGDHSSAKDG-KTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD

AT1G57765.1 unknown protein1.5e-1547.62Show/hide
Query:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVE
        +S S  ++S   L    S+ LH    ++GD +S+  G  K      S  TG K++ I LG          L+KLWQKKKR+EQ+ARLLKLFE+DDELEVE
Subjt:  MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVE

Query:  LGLRD
        LGLRD
Subjt:  LGLRD

AT1G57765.2 unknown protein4.4e-1552.17Show/hide
Query:  FLLSLSLHSL-SVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD
        FL  L L S+   ++GD +S+  G  K      S  TG K++ I LG          L+KLWQKKKR+EQ+ARLLKLFE+DDELEVELGLRD
Subjt:  FLLSLSLHSL-SVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD

AT3G53490.1 unknown protein1.5e-0739.73Show/hide
Query:  SAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD
        S K+  T+K +       GI +LI+ L +       ++ +K W+KKKR+++ AR LKLFED D++E ELGL +
Subjt:  SAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCGATCTCGAAGCTCCATATCTCTGCAAGTCCTCTCTTTCCTTCTCTCCCTCTCTCTCCATTCTCTTTCAGTGTTGGCAGGTGATCATTCAAGTGCTAAAGATGG
TAAAACTAAAAAGCACGATGCTCCGAAGAGTCCATCAACAGGGATCAAGATGCTAATCATATGTCTAGGTGTGGTGACTTTCATTGCGTTCTATGTGATTCTATTCAAAT
TATGGCAAAAGAAGAAGAGAGAAGAACAGCATGCCCGTCTTCTCAAGCTGTTTGAAGATGACGATGAACTCGAAGTCGAACTTGGCCTTCGGGATTGA
mRNA sequenceShow/hide mRNA sequence
TCTCCATTAGAAAAAAATAAAAATAAAAAACCGGCTAAAATTCCGCCATTTTCGACCCTTCCCAATTTCCTTCTCAAGAAATTCCGACCAAATCATCCTCCTCGAGAAAG
CTGCAGAGATCGGCGAAGGGATGTCTCGATCTCGAAGCTCCATATCTCTGCAAGTCCTCTCTTTCCTTCTCTCCCTCTCTCTCCATTCTCTTTCAGTGTTGGCAGGTGAT
CATTCAAGTGCTAAAGATGGTAAAACTAAAAAGCACGATGCTCCGAAGAGTCCATCAACAGGGATCAAGATGCTAATCATATGTCTAGGTGTGGTGACTTTCATTGCGTT
CTATGTGATTCTATTCAAATTATGGCAAAAGAAGAAGAGAGAAGAACAGCATGCCCGTCTTCTCAAGCTGTTTGAAGATGACGATGAACTCGAAGTCGAACTTGGCCTTC
GGGATTGAGCTCTCTGATCCTCGTCCTCCATATCCAACCAATTAAGAGGAGTAAAGCACTTTTGCAGAGGCTGTTTTGAGCTAAGAATTTTGGTGGTTTGTGGAGCAGCC
AGCACCAGCAGGTACTCATAGCTTTAAGACTTACTTCAATAGTTTTGGCCCAAACAAACTGCTCTGAGTTAGTCTAATAGTCTCATTGGGGCAAGG
Protein sequenceShow/hide protein sequence
MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD