; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G008850 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G008850
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLysM domain-containing protein
Genome locationCmo_Chr01:4833009..4835530
RNA-Seq ExpressionCmoCh01G008850
SyntenyCmoCh01G008850
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607505.1 hypothetical protein SDJN03_00847, partial [Cucurbita argyrosperma subsp. sororia]3.1e-10796.59Show/hide
Query:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGVD SPLLPQPIL SLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMH TLACPRLPPARTTSLVVLVPLIVFCAK
Subjt:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ
        CIIGASYARVFGTSRLKPVKEPEGE HNFRSGHWRSALREIREL+GLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQ+YDKFLSECGLSK GYWRGGAQ
Subjt:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ

Query:  RPGQE
        RPGQE
Subjt:  RPGQE

KAG7037157.1 hypothetical protein SDJN02_00779 [Cucurbita argyrosperma subsp. argyrosperma]6.3e-10897.07Show/hide
Query:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGVD SPLLPQPIL SLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
Subjt:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ
        CIIGASYARVFGTSRLKPVKEPEGE HNFRSGHWRSALREIREL+GLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQ+YDKFLSECGLSK GYWRGGAQ
Subjt:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ

Query:  RPGQE
        RPGQE
Subjt:  RPGQE

XP_022949194.1 uncharacterized protein LOC111452617 isoform X1 [Cucurbita moschata]6.5e-113100Show/hide
Query:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
Subjt:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ
        CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ
Subjt:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ

Query:  RPGQE
        RPGQE
Subjt:  RPGQE

XP_022973434.1 uncharacterized protein LOC111471976 [Cucurbita maxima]1.7e-10594.63Show/hide
Query:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAK SLKN FRAIALFRDRYQLQEKLQSSLNGLCKY+MHFTLACPRLPPARTTSL+VLVPLIVFCA 
Subjt:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ
        CIIGASYARVFGTSRLKPVKEPEGE HNFR+GHWRSALREIREL+GLDSESSIYST PSEE QISVEDLSHAYKKLDQ+YDKFLSECGLSKSGYWRGGAQ
Subjt:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ

Query:  RPGQE
        RPGQE
Subjt:  RPGQE

XP_023522372.1 uncharacterized protein LOC111786288 [Cucurbita pepo subsp. pepo]6.5e-10595.63Show/hide
Query:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGV RSPLLPQPILPSLLTPHRNWANAK SLKN FRAIALFRDRYQLQEKLQSSLNGL KYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
Subjt:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ
        CIIGASYARVFGTSRLKPVKEPEGE HNFRSGHWRSALREIREL+GLDSESSIYSTSPSEEQQISVEDLSHAY+KLDQDYDKFLSECGLSK GYWRGGAQ
Subjt:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ

Query:  -RPGQE
         RPGQE
Subjt:  -RPGQE

TrEMBL top hitse value%identityAlignment
A0A1S3CBV5 uncharacterized protein LOC103498697 isoform X21.9e-6552.16Show/hide
Query:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIAL----------------------------------------------------
        MEVKV QRN   R  LLP P LPSL    RNWAN K S  NQ R I+L                                                    
Subjt:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIAL----------------------------------------------------

Query:  ---------------------FRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGECH
                              RD +QL+EKLQ++LNGL  Y+  F LA  RLPPARTTS +VLVPL++FC +CIIGASYARVFGT +LK + + EGE H
Subjt:  ---------------------FRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGECH

Query:  NFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQRPGQE
         FRSGHWRSALR+IREL+GLD E+ I STSPSE++QISVEDLSHAYKKLDQDY+KFLSECGLSK GYWRGG QRP QE
Subjt:  NFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQRPGQE

A0A5A7T6Z4 LysM domain-containing protein4.1e-6552.16Show/hide
Query:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIAL----------------------------------------------------
        MEVKV QRN   R  LLP P LPSL    RNWAN K S  NQ R I+L                                                    
Subjt:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIAL----------------------------------------------------

Query:  ---------------------FRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGECH
                              RD +QL+EKLQS+LNGL  Y+  F LA  RLPPARTTS +VLVPL++FC +CIIGASYARVFGT +LK + + EGE H
Subjt:  ---------------------FRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGECH

Query:  NFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQRPGQE
         FRSGHWRSALR+IREL+GLD E+ I STSPS ++QISVEDLSHAYKKLDQDY+KFLSECGLSK GYWRGG QRP QE
Subjt:  NFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQRPGQE

A0A6J1GC34 uncharacterized protein LOC111452617 isoform X21.5e-83100Show/hide
Query:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
Subjt:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYST
        CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYST
Subjt:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYST

A0A6J1GC39 uncharacterized protein LOC111452617 isoform X13.1e-113100Show/hide
Query:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
Subjt:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ
        CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ
Subjt:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ

Query:  RPGQE
        RPGQE
Subjt:  RPGQE

A0A6J1IEK4 uncharacterized protein LOC1114719768.3e-10694.63Show/hide
Query:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAK SLKN FRAIALFRDRYQLQEKLQSSLNGLCKY+MHFTLACPRLPPARTTSL+VLVPLIVFCA 
Subjt:  MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ
        CIIGASYARVFGTSRLKPVKEPEGE HNFR+GHWRSALREIREL+GLDSESSIYST PSEE QISVEDLSHAYKKLDQ+YDKFLSECGLSKSGYWRGGAQ
Subjt:  CIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQ

Query:  RPGQE
        RPGQE
Subjt:  RPGQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09970.1 unknown protein1.1e-0631.48Show/hide
Query:  LVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRE---LNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFL
        L  L+P++ FC  CIIG  +  +   SR    K  +G  H+  S  WR+AL +  E    +G DS S  Y  + + ++  + ++++ AY +++ +Y +FL
Subjt:  LVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRE---LNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFL

Query:  SECGLSKS
         ECG+ +S
Subjt:  SECGLSKS

AT4G09970.2 unknown protein7.4e-0631.43Show/hide
Query:  LVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSEC
        L  L+P++ FC  CIIG  +  +   SR    K  +G  H+  S  WR+AL +  E    D   S+   SP   +  + ++++ AY +++ +Y +FL EC
Subjt:  LVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSEC

Query:  GLSKS
        G+ +S
Subjt:  GLSKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTGAAGGTTGGGCAGAGAAATGGAGTAGACCGTTCTCCTCTTCTCCCACAACCAATTCTCCCTTCTCTTCTAACTCCTCACAGAAATTGGGCCAACGCCAAAGC
ATCCTTGAAGAATCAATTCAGAGCCATTGCGCTGTTTAGAGATAGATATCAATTGCAAGAAAAGCTTCAGAGTTCTTTGAATGGACTTTGTAAATATCAAATGCATTTCA
CGCTTGCCTGCCCCCGACTACCTCCTGCTAGAACCACTAGTTTGGTAGTTTTGGTTCCCCTCATAGTATTTTGTGCCAAATGCATAATTGGTGCCTCTTATGCTAGAGTT
TTCGGAACGTCGAGGCTTAAACCCGTTAAGGAACCAGAGGGAGAATGTCACAACTTCAGAAGCGGCCATTGGAGGTCTGCTCTTCGAGAGATAAGGGAATTGAATGGTTT
GGATTCTGAGTCCTCCATATATTCTACTAGCCCTTCAGAAGAACAACAGATCTCAGTTGAAGATTTGTCACATGCTTACAAAAAACTGGATCAGGATTACGACAAATTTC
TATCAGAATGTGGACTGAGTAAATCGGGCTATTGGCGAGGAGGTGCGCAGAGACCTGGACAGGAATAG
mRNA sequenceShow/hide mRNA sequence
CCTGTTTATGTAATTACACTAAAAGGGAAAAAGAAAACAAAAATAGGCAATAGGCATGGCGAAATTTGAAGGGTTTGTGCGATGGAAGTGAAGGTTGGGCAGAGAAATGG
AGTAGACCGTTCTCCTCTTCTCCCACAACCAATTCTCCCTTCTCTTCTAACTCCTCACAGAAATTGGGCCAACGCCAAAGCATCCTTGAAGAATCAATTCAGAGCCATTG
CGCTGTTTAGAGATAGATATCAATTGCAAGAAAAGCTTCAGAGTTCTTTGAATGGACTTTGTAAATATCAAATGCATTTCACGCTTGCCTGCCCCCGACTACCTCCTGCT
AGAACCACTAGTTTGGTAGTTTTGGTTCCCCTCATAGTATTTTGTGCCAAATGCATAATTGGTGCCTCTTATGCTAGAGTTTTCGGAACGTCGAGGCTTAAACCCGTTAA
GGAACCAGAGGGAGAATGTCACAACTTCAGAAGCGGCCATTGGAGGTCTGCTCTTCGAGAGATAAGGGAATTGAATGGTTTGGATTCTGAGTCCTCCATATATTCTACTA
GCCCTTCAGAAGAACAACAGATCTCAGTTGAAGATTTGTCACATGCTTACAAAAAACTGGATCAGGATTACGACAAATTTCTATCAGAATGTGGACTGAGTAAATCGGGC
TATTGGCGAGGAGGTGCGCAGAGACCTGGACAGGAATAGGCAATCTTTGCAGCACTTTTCTGTGCTCCCTTGCCATCCAAAAGGGGCTAGGCTAGGGAGTTCTTTGTAGC
AACCATTTTTCTGGTGTTGTATTGTAGTGGAGTAAAAATTTCAACCCAGTAATGTAATTAAACTTTAAATTGGACAAAATTTATGCATTCTGCATCCAATTTGCTACAAC
TCTTGACAAAGAACGTGCATGACCGGAGTCTCGCCGGGATTCTCAGTCACTTTGAGCTTTGCATCGGCGAACTCATCCACTTCCTCCTCCCCCCGCCATGGAGCTGAAGA
TGCCAACTGCTTCTTCTTCGCCATTTTTCCGCCCAGCCCAAGTTCCTCATGACAGCCGTAAGAGGCCTCAGTTTATAGGGCCCCCATTGTTGATACTCTTGAGTTTACTG
CACAGACCCATTAAAATTCACTGAGATTTAGTCGGCCATCCAAAAATGAGAGCAGTGTTGGTTTCTAGAAGCATTAGATCGTTTTACAGTGTTGATAAGGATGTAACTGG
GAAGTCGAATTGAAGAGCATGTTCTTTTCTTTGTGGTTTTGATCTCTTTGAGCCAACCCCAACAGGTTTCTAATAATTCTATCGAAATTTAGTTAGTCCACGTAGAGACC
ATCTGTC
Protein sequenceShow/hide protein sequence
MEVKVGQRNGVDRSPLLPQPILPSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCIIGASYARV
FGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQRPGQE