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CmoCh01G009860 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G009860
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationCmo_Chr01:6522914..6531751
RNA-Seq ExpressionCmoCh01G009860
SyntenyCmoCh01G009860
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2404782.1 CBL-interacting serine/threonine-protein [Vigna angularis]6.3e-2588.73Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDSEVS-PF
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKK+LGRILLKGDNITLMM+T   V+ PF
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDSEVS-PF

KOM29041.1 hypothetical protein LR48_Vigan627s009000 [Vigna angularis]3.7e-2589.86Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDSEVSP
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKK+LGRILLKGDNITLMM+T   +SP
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDSEVSP

XP_022932078.1 small nuclear ribonucleoprotein E-like [Cucurbita moschata]2.8e-25100Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT

XP_038880616.1 small nuclear ribonucleoprotein E-like isoform X1 [Benincasa hispida]6.3e-2598.41Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK+LGRILLKGDNITLMMNT
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT

XP_038880617.1 small nuclear ribonucleoprotein E-like isoform X2 [Benincasa hispida]1.7e-2596.92Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDS
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK+LGRILLKGDNITLMMNT S
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDS

TrEMBL top hitse value%identityAlignment
A0A0L9TF55 Small nuclear ribonucleoprotein E1.8e-2589.86Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDSEVSP
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKK+LGRILLKGDNITLMM+T   +SP
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDSEVSP

A0A6J1F0M2 Small nuclear ribonucleoprotein E1.4e-25100Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT

A0A6J1ICX7 Small nuclear ribonucleoprotein E1.4e-25100Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT

A0A6J1JLU4 Small nuclear ribonucleoprotein E3.0e-2598.41Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK+LGRILLKGDNITLMMNT
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT

G7IMA2 Small nuclear ribonucleoprotein E3.0e-2598.41Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK+LGRILLKGDNITLMMNT
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT

SwissProt top hitse value%identityAlignment
A1XQR9 Small nuclear ribonucleoprotein E1.8e-1967.69Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDS
        ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +  +
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDS

A4FUI2 Small nuclear ribonucleoprotein E1.8e-1967.69Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDS
        ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +  +
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDS

P62303 Small nuclear ribonucleoprotein E1.8e-1967.69Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDS
        ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +  +
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDS

P62304 Small nuclear ribonucleoprotein E1.8e-1967.69Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDS
        ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +  +
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDS

P62305 Small nuclear ribonucleoprotein E1.8e-1967.69Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDS
        ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +  +
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNTDS

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein1.0e-2587.3Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT
        KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LGRILLKGDNITLMMNT
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMNT

AT2G18740.2 Small nuclear ribonucleoprotein family protein3.0e-1783.33Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLG
        KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LG
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLG

AT4G30330.1 Small nuclear ribonucleoprotein family protein1.0e-2588.71Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMN
        KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KKK++K LGRILLKGDNITLMMN
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLMMN

AT5G48870.1 Small nuclear ribonucleoprotein family protein2.2e-0433.9Show/hide
Query:  QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK--SLGRILLKGDNITLMM
        +IW+  + D  + G + GFD Y+N+VL+D  E  +  + ++   L +ILL G+NI +++
Subjt:  QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK--SLGRILLKGDNITLMM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAAACCGGAACCAAACTCCCTTTGCCCTAACAGAAGTTTCAATCTATACCACAGCTGTGAGCTGCAATTTGTGAGCGAAAGCGGAGAAGTTAGGCCTTCGATTTC
CTTTTTCCCCGTCCTTCAGAAATCTTTTCGATTCAGTCCCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATCAACTTGATTTTCAGAAAGCTCGGATTC
AGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGGCTTTGATGAATATATGAATTTGGTTTTGGATGATGCCGAGGAGGTCAATGTGAAGAAG
AAGAGCAAGAAGAGTTTAGGGAGGATATTGCTCAAAGGAGATAACATAACTCTGATGATGAACACAGATAGCGAAGTCAGCCCTTTCATGTTGAAACTTGAAGGCCTTGT
GTTACCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTAAACCGGAACCAAACTCCCTTTGCCCTAACAGAAGTTTCAATCTATACCACAGCTGTGAGCTGCAATTTGTGAGCGAAAGCGGAGAAGTTAGGCCTTCGATTTC
CTTTTTCCCCGTCCTTCAGAAATCTTTTCGATTCAGTCCCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATCAACTTGATTTTCAGAAAGCTCGGATTC
AGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGGCTTTGATGAATATATGAATTTGGTTTTGGATGATGCCGAGGAGGTCAATGTGAAGAAG
AAGAGCAAGAAGAGTTTAGGGAGGATATTGCTCAAAGGAGATAACATAACTCTGATGATGAACACAGATAGCGAAGTCAGCCCTTTCATGTTGAAACTTGAAGGCCTTGT
GTTACCATAG
Protein sequenceShow/hide protein sequence
MLKPEPNSLCPNRSFNLYHSCELQFVSESGEVRPSISFFPVLQKSFRFSPHGEHQSSEDYDPTHQLDFQKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK
KSKKSLGRILLKGDNITLMMNTDSEVSPFMLKLEGLVLP